3T4MA

Ac-achbp ligand binding domain mutated to human alpha-7 nachr (intermediate)
Total Genus 49
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
49
sequence length
214
structure length
214
Chain Sequence
KDDDDKLHSQANLMRLKSDLFNRSPMYPGPTKDDPLTVTLGFTLQDIVKADSSTNEVDLVYWEQQRWKLNSLMWDPNEYGNITDFRTSAADIWTPDITAYSSTRPVQVLSPQNALVTHDGSVQYLPAQRLSFMCDPTGVDSEEGATCAVKFGSWSYSGFEIDLKTDTDQVDLSSYYASSKYEILSATQTRQVRFYECCKEPYPDVNLVVKFRER
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Receptor
molecule keywords Soluble acetylcholine receptor
publication title Creating an alpha-7 nicotinic acetylcholine recognition domain from the acetylcholine binding protein: crystallographic and ligand selectivity analyses
pubmed doi rcsb
source organism Aplysia californica
total genus 49
structure length 214
sequence length 214
chains with identical sequence B, C, D, E, F, G, H, I, J
ec nomenclature
pdb deposition date 2011-07-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02931 Neur_chan_LBD Neurotransmitter-gated ion-channel ligand binding domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.70.170.10 Mainly Beta Distorted Sandwich Acetylcholine Binding Protein; Chain: A, Neurotransmitter-gated ion-channel ligand-binding domain 3t4mA00
4HFBA 4ZZCA 2BR8A 5JMEA 3RQWA 1I9BA 5J5IA 3JAEA 4UM3P 3UU4A 5HEGA 5HEHA 3WTNA 4HQPA 2BG9B 5AINA 4QH5A 2Y58A 4TNWA 4ZR6A 3SQ6A 4IL9A 4AFHA 5SYOA 3U8NA 2XNTA 3P4WA 4TWDA 3C84A 3EAMA 2XYSA 4QAAA 4AFTA 5AFHA 4Z91A 4ZJSA 2XQ9A 5IUXA 2YMEA 2XQ7A 2YOEA 3TLVA 3RIAA 5HEJA 4UM1A 5AFMA 4QACA 5BW2A 2XQ3A 5HEUA 3UU6A 2ZJUA 1UX2A 4HFEA 4A98A 5HEOA 4COFA 2BG9E 2XQ4A 3JAFA 2UZ6A 4HFDA 4EZ1A 4ZJTA 4UXUA 3UQ4A 5L4HA 2WNLA 3LSVA 2XZ5A 3PEOA 2WZYA 5FJVA 3EI0A 2QC1B 4IREA 3WIPA 5LXBA 4B5DA 5AFNA 4BFQA 5AFLA 3UUBA 2XQ8A 3RI5A 4ILAA 4ZZBA 2PGZA 4F8HA 2Y57A 3IGQA 3WTIA 2BYPA 4DBMA 4PIRA 3WTKA 4UY2A 2X00D 3WTLA 3U8KA 5BRXA 3RQUA 4X5TA 3C79A 2PH9A 2X00A 3ZDGA 5CFBA 3JADA 4ZK4A 3P50A 4UM3A 1UV6A 2Y54A 2W8FA 5HCJA 4QABA 4HFCA 1UW6A 3WTMA 3UQ7A 5L47A 2BR7A 2XQ6A 2Y56A 5HCMA 5L4EA 3TLSA 3U8JA 3PMZA 2WNJA 3EHZA 4TWHA 2BYSA 4ZRUA 4ILCA 2BG9A 2YMDA 4QH4A 3U8MA 3WTJA 4NZBA 2C9TA 3TLWA 3T4MA 5J0ZA 2BYRA 2YKSA 4TNVA 4XK9A 3UU3A 4ZK1A 5KZUA 3ZKRA 2WN9A 4IL4A 3WTHA 5J5FA 5LG3A 4AFGA 5TVCA 5AFMB 5BP0A 3WTOA 4UM3S 4QH1A 4WV9A 3GUAA 2VL0A 3RHWA 2W8GA 4ALXA 2XNVA 2XZ6A 3UU5A 2XNUA 2XYTA 3UU8A 2Y7YA 4Z90A 2YN6A 4A97A 3U8LA 5CO5A 2BYNA 5J5GA 5AFJA 4FRRA 4NPPA 2BYQA 2ZJVA 3TLTA 4HFHA 3ZDHA 4D01A 4BQTA 4TWFA 4XHEA 3RIFA 3SH1A 4LMKA 4HFIA 4LMLA 4ILBA 5KE4A 3SIOA 2BG9C 2XQ5A 2BJ0A 3SQ9A 5J5HA 5AFKA 3TLUA 2XQAA 2WNCA 4LMJA
chains in the Genus database with same CATH superfamily
4HFBA 4ZZCA 2BR8A 5JMEA 3RQWA 1I9BA 5J5IA 3JAEA 4UM3P 3UU4A 5HEGA 5HEHA 3WTNA 4HQPA 2BG9B 5AINA 4QH5A 2Y58A 4TNWA 4ZR6A 3SQ6A 4IL9A 4AFHA 5SYOA 3U8NA 2XNTA 3P4WA 4TWDA 3C84A 3EAMA 2XYSA 4QAAA 4AFTA 5AFHA 4Z91A 4ZJSA 2XQ9A 5IUXA 2YMEA 2XQ7A 2YOEA 3TLVA 3RIAA 5HEJA 4UM1A 5AFMA 4QACA 5BW2A 2XQ3A 5HEUA 3UU6A 2ZJUA 1UX2A 4HFEA 4A98A 5HEOA 4COFA 2BG9E 2XQ4A 3JAFA 2UZ6A 4HFDA 4EZ1A 4ZJTA 4UXUA 3UQ4A 5L4HA 2WNLA 3LSVA 2XZ5A 3PEOA 2WZYA 5FJVA 3EI0A 2QC1B 4IREA 3WIPA 5LXBA 4B5DA 5AFNA 4BFQA 5AFLA 3UUBA 2XQ8A 3RI5A 4ILAA 4ZZBA 2PGZA 4F8HA 2Y57A 3IGQA 3WTIA 2BYPA 4DBMA 4PIRA 3WTKA 4UY2A 2X00D 3WTLA 3U8KA 5BRXA 3RQUA 4X5TA 3C79A 2PH9A 2X00A 3ZDGA 5CFBA 3JADA 4ZK4A 3P50A 4UM3A 1UV6A 2Y54A 2W8FA 5HCJA 4QABA 4HFCA 1UW6A 3WTMA 3UQ7A 5L47A 2BR7A 2XQ6A 2Y56A 5HCMA 5L4EA 3TLSA 3U8JA 3PMZA 2WNJA 3EHZA 4TWHA 2BYSA 4ZRUA 4ILCA 2BG9A 2YMDA 4QH4A 3U8MA 3WTJA 4NZBA 2C9TA 3TLWA 3T4MA 5J0ZA 2BYRA 2YKSA 4TNVA 4XK9A 3UU3A 4ZK1A 5KZUA 3ZKRA 2WN9A 4IL4A 3WTHA 5J5FA 5LG3A 4AFGA 5TVCA 5AFMB 5BP0A 3WTOA 4UM3S 4QH1A 4WV9A 3GUAA 2VL0A 3RHWA 2W8GA 4ALXA 2XNVA 2XZ6A 3UU5A 2XNUA 2XYTA 3UU8A 2Y7YA 4Z90A 2YN6A 4A97A 3U8LA 5CO5A 2BYNA 5J5GA 5AFJA 4FRRA 4NPPA 2BYQA 2ZJVA 3TLTA 4HFHA 3ZDHA 4D01A 4BQTA 4TWFA 4XHEA 3RIFA 3SH1A 4LMKA 4HFIA 4LMLA 4ILBA 5KE4A 3SIOA 2BG9C 2XQ5A 2BJ0A 3SQ9A 5J5HA 5AFKA 3TLUA 2XQAA 2WNCA 4LMJA
chains in the Genus database with same CATH topology
4HFBA 4ZZCA 2BR8A 5JMEA 3RQWA 1I9BA 5J5IA 3JAEA 4UM3P 3UU4A 5HEGA 5HEHA 3WTNA 4HQPA 2BG9B 5AINA 4QH5A 2Y58A 4TNWA 4ZR6A 3SQ6A 4IL9A 4AFHA 5SYOA 3U8NA 2XNTA 3P4WA 4TWDA 3C84A 3EAMA 2XYSA 4QAAA 4AFTA 5AFHA 4Z91A 4ZJSA 2XQ9A 5IUXA 2YMEA 2XQ7A 2YOEA 3TLVA 3RIAA 5HEJA 4UM1A 5AFMA 4QACA 5BW2A 2XQ3A 5HEUA 3UU6A 2ZJUA 1UX2A 4HFEA 4A98A 5HEOA 4COFA 2BG9E 2XQ4A 3JAFA 2UZ6A 4HFDA 4EZ1A 4ZJTA 4UXUA 3UQ4A 5L4HA 2WNLA 3LSVA 2XZ5A 3PEOA 2WZYA 5FJVA 3EI0A 2QC1B 4IREA 3WIPA 5LXBA 4B5DA 5AFNA 4BFQA 5AFLA 3UUBA 2XQ8A 3RI5A 4ILAA 4ZZBA 2PGZA 4F8HA 2Y57A 3IGQA 3WTIA 2BYPA 4DBMA 4PIRA 3WTKA 4UY2A 2X00D 3WTLA 3U8KA 5BRXA 3RQUA 4X5TA 3C79A 2PH9A 2X00A 3ZDGA 5CFBA 3JADA 4ZK4A 3P50A 4UM3A 1UV6A 2Y54A 2W8FA 5HCJA 4QABA 4HFCA 1UW6A 3WTMA 3UQ7A 5L47A 2BR7A 2XQ6A 2Y56A 5HCMA 5L4EA 3TLSA 3U8JA 3PMZA 2WNJA 3EHZA 4TWHA 2BYSA 4ZRUA 4ILCA 2BG9A 2YMDA 4QH4A 3U8MA 3WTJA 4NZBA 2C9TA 3TLWA 3T4MA 5J0ZA 2BYRA 2YKSA 4TNVA 4XK9A 3UU3A 4ZK1A 5KZUA 3ZKRA 2WN9A 4IL4A 3WTHA 5J5FA 5LG3A 4AFGA 5TVCA 5AFMB 5BP0A 3WTOA 4UM3S 4QH1A 4WV9A 3GUAA 2VL0A 3RHWA 2W8GA 4ALXA 2XNVA 2XZ6A 3UU5A 2XNUA 2XYTA 3UU8A 2Y7YA 4Z90A 2YN6A 4A97A 3U8LA 5CO5A 2BYNA 5J5GA 5AFJA 4FRRA 4NPPA 2BYQA 2ZJVA 3TLTA 4HFHA 3ZDHA 4D01A 4BQTA 4TWFA 4XHEA 3RIFA 3SH1A 4LMKA 4HFIA 4LMLA 4ILBA 5KE4A 3SIOA 2BG9C 2XQ5A 2BJ0A 3SQ9A 5J5HA 5AFKA 3TLUA 2XQAA 2WNCA 4LMJA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4HFB A;  4ZZC A;  2BR8 A;  5JME A;  3RQW A;  1I9B A;  5J5I A;  3JAE A;  4UM3 P;  3UU4 A;  5HEG A;  5HEH A;  3WTN A;  4HQP A;  2BG9 B;  5AIN A;  4QH5 A;  2Y58 A;  4TNW A;  4ZR6 A;  3SQ6 A;  4IL9 A;  4AFH A;  5SYO A;  3U8N A;  2XNT A;  3P4W A;  4TWD A;  3C84 A;  3EAM A;  2XYS A;  4QAA A;  4AFT A;  5AFH A;  4Z91 A;  4ZJS A;  2XQ9 A;  5IUX A;  2YME A;  2XQ7 A;  2YOE A;  3TLV A;  3RIA A;  5HEJ A;  4UM1 A;  5AFM A;  4QAC A;  5BW2 A;  2XQ3 A;  5HEU A;  3UU6 A;  2ZJU A;  1UX2 A;  4HFE A;  4A98 A;  5HEO A;  4COF A;  2BG9 E;  2XQ4 A;  3JAF A;  2UZ6 A;  4HFD A;  4EZ1 A;  4ZJT A;  4UXU A;  3UQ4 A;  5L4H A;  2WNL A;  3LSV A;  2XZ5 A;  3PEO A;  2WZY A;  5FJV A;  3EI0 A;  2QC1 B;  4IRE A;  3WIP A;  5LXB A;  4B5D A;  5AFN A;  4BFQ A;  5AFL A;  3UUB A;  2XQ8 A;  3RI5 A;  4ILA A;  4ZZB A;  2PGZ A;  4F8H A;  2Y57 A;  3IGQ A;  3WTI A;  2BYP A;  4DBM A;  4PIR A;  3WTK A;  4UY2 A;  2X00 D;  3WTL A;  3U8K A;  5BRX A;  3RQU A;  4X5T A;  3C79 A;  2PH9 A;  2X00 A;  3ZDG A;  5CFB A;  3JAD A;  4ZK4 A;  3P50 A;  4UM3 A;  1UV6 A;  2Y54 A;  2W8F A;  5HCJ A;  4QAB A;  4HFC A;  1UW6 A;  3WTM A;  3UQ7 A;  5L47 A;  2BR7 A;  2XQ6 A;  2Y56 A;  5HCM A;  5L4E A;  3TLS A;  3U8J A;  3PMZ A;  2WNJ A;  3EHZ A;  4TWH A;  2BYS A;  4ZRU A;  4ILC A;  2BG9 A;  2YMD A;  4QH4 A;  3U8M A;  3WTJ A;  4NZB A;  2C9T A;  3TLW A;  3T4M A;  5J0Z A;  2BYR A;  2YKS A;  4TNV A;  4XK9 A;  3UU3 A;  4ZK1 A;  5KZU A;  3ZKR A;  2WN9 A;  4IL4 A;  3WTH A;  5J5F A;  5LG3 A;  4AFG A;  5TVC A;  5AFM B;  5BP0 A;  3WTO A;  4UM3 S;  4QH1 A;  4WV9 A;  3GUA A;  2VL0 A;  3RHW A;  2W8G A;  4ALX A;  2XNV A;  2XZ6 A;  3UU5 A;  2XNU A;  2XYT A;  3UU8 A;  2Y7Y A;  4Z90 A;  2YN6 A;  4A97 A;  3U8L A;  5CO5 A;  2BYN A;  5J5G A;  5AFJ A;  4FRR A;  4NPP A;  2BYQ A;  2ZJV A;  3TLT A;  4HFH A;  3ZDH A;  4D01 A;  4BQT A;  4TWF A;  4XHE A;  3RIF A;  3SH1 A;  4LMK A;  4HFI A;  4LML A;  4ILB A;  5KE4 A;  3SIO A;  2BG9 C;  2XQ5 A;  2BJ0 A;  3SQ9 A;  5J5H A;  5AFK A;  3TLU A;  2XQA A;  2WNC A;  4LMJ A; 
#chains in the Genus database with same CATH topology
 4HFB A;  4ZZC A;  2BR8 A;  5JME A;  3RQW A;  1I9B A;  5J5I A;  3JAE A;  4UM3 P;  3UU4 A;  5HEG A;  5HEH A;  3WTN A;  4HQP A;  2BG9 B;  5AIN A;  4QH5 A;  2Y58 A;  4TNW A;  4ZR6 A;  3SQ6 A;  4IL9 A;  4AFH A;  5SYO A;  3U8N A;  2XNT A;  3P4W A;  4TWD A;  3C84 A;  3EAM A;  2XYS A;  4QAA A;  4AFT A;  5AFH A;  4Z91 A;  4ZJS A;  2XQ9 A;  5IUX A;  2YME A;  2XQ7 A;  2YOE A;  3TLV A;  3RIA A;  5HEJ A;  4UM1 A;  5AFM A;  4QAC A;  5BW2 A;  2XQ3 A;  5HEU A;  3UU6 A;  2ZJU A;  1UX2 A;  4HFE A;  4A98 A;  5HEO A;  4COF A;  2BG9 E;  2XQ4 A;  3JAF A;  2UZ6 A;  4HFD A;  4EZ1 A;  4ZJT A;  4UXU A;  3UQ4 A;  5L4H A;  2WNL A;  3LSV A;  2XZ5 A;  3PEO A;  2WZY A;  5FJV A;  3EI0 A;  2QC1 B;  4IRE A;  3WIP A;  5LXB A;  4B5D A;  5AFN A;  4BFQ A;  5AFL A;  3UUB A;  2XQ8 A;  3RI5 A;  4ILA A;  4ZZB A;  2PGZ A;  4F8H A;  2Y57 A;  3IGQ A;  3WTI A;  2BYP A;  4DBM A;  4PIR A;  3WTK A;  4UY2 A;  2X00 D;  3WTL A;  3U8K A;  5BRX A;  3RQU A;  4X5T A;  3C79 A;  2PH9 A;  2X00 A;  3ZDG A;  5CFB A;  3JAD A;  4ZK4 A;  3P50 A;  4UM3 A;  1UV6 A;  2Y54 A;  2W8F A;  5HCJ A;  4QAB A;  4HFC A;  1UW6 A;  3WTM A;  3UQ7 A;  5L47 A;  2BR7 A;  2XQ6 A;  2Y56 A;  5HCM A;  5L4E A;  3TLS A;  3U8J A;  3PMZ A;  2WNJ A;  3EHZ A;  4TWH A;  2BYS A;  4ZRU A;  4ILC A;  2BG9 A;  2YMD A;  4QH4 A;  3U8M A;  3WTJ A;  4NZB A;  2C9T A;  3TLW A;  3T4M A;  5J0Z A;  2BYR A;  2YKS A;  4TNV A;  4XK9 A;  3UU3 A;  4ZK1 A;  5KZU A;  3ZKR A;  2WN9 A;  4IL4 A;  3WTH A;  5J5F A;  5LG3 A;  4AFG A;  5TVC A;  5AFM B;  5BP0 A;  3WTO A;  4UM3 S;  4QH1 A;  4WV9 A;  3GUA A;  2VL0 A;  3RHW A;  2W8G A;  4ALX A;  2XNV A;  2XZ6 A;  3UU5 A;  2XNU A;  2XYT A;  3UU8 A;  2Y7Y A;  4Z90 A;  2YN6 A;  4A97 A;  3U8L A;  5CO5 A;  2BYN A;  5J5G A;  5AFJ A;  4FRR A;  4NPP A;  2BYQ A;  2ZJV A;  3TLT A;  4HFH A;  3ZDH A;  4D01 A;  4BQT A;  4TWF A;  4XHE A;  3RIF A;  3SH1 A;  4LMK A;  4HFI A;  4LML A;  4ILB A;  5KE4 A;  3SIO A;  2BG9 C;  2XQ5 A;  2BJ0 A;  3SQ9 A;  5J5H A;  5AFK A;  3TLU A;  2XQA A;  2WNC A;  4LMJ A; 
#chains in the Genus database with same CATH homology
 4HFB A;  4ZZC A;  2BR8 A;  5JME A;  3RQW A;  1I9B A;  5J5I A;  3JAE A;  4UM3 P;  3UU4 A;  5HEG A;  5HEH A;  3WTN A;  4HQP A;  2BG9 B;  5AIN A;  4QH5 A;  2Y58 A;  4TNW A;  4ZR6 A;  3SQ6 A;  4IL9 A;  4AFH A;  5SYO A;  3U8N A;  2XNT A;  3P4W A;  4TWD A;  3C84 A;  3EAM A;  2XYS A;  4QAA A;  4AFT A;  5AFH A;  4Z91 A;  4ZJS A;  2XQ9 A;  5IUX A;  2YME A;  2XQ7 A;  2YOE A;  3TLV A;  3RIA A;  5HEJ A;  4UM1 A;  5AFM A;  4QAC A;  5BW2 A;  2XQ3 A;  5HEU A;  3UU6 A;  2ZJU A;  1UX2 A;  4HFE A;  4A98 A;  5HEO A;  4COF A;  2BG9 E;  2XQ4 A;  3JAF A;  2UZ6 A;  4HFD A;  4EZ1 A;  4ZJT A;  4UXU A;  3UQ4 A;  5L4H A;  2WNL A;  3LSV A;  2XZ5 A;  3PEO A;  2WZY A;  5FJV A;  3EI0 A;  2QC1 B;  4IRE A;  3WIP A;  5LXB A;  4B5D A;  5AFN A;  4BFQ A;  5AFL A;  3UUB A;  2XQ8 A;  3RI5 A;  4ILA A;  4ZZB A;  2PGZ A;  4F8H A;  2Y57 A;  3IGQ A;  3WTI A;  2BYP A;  4DBM A;  4PIR A;  3WTK A;  4UY2 A;  2X00 D;  3WTL A;  3U8K A;  5BRX A;  3RQU A;  4X5T A;  3C79 A;  2PH9 A;  2X00 A;  3ZDG A;  5CFB A;  3JAD A;  4ZK4 A;  3P50 A;  4UM3 A;  1UV6 A;  2Y54 A;  2W8F A;  5HCJ A;  4QAB A;  4HFC A;  1UW6 A;  3WTM A;  3UQ7 A;  5L47 A;  2BR7 A;  2XQ6 A;  2Y56 A;  5HCM A;  5L4E A;  3TLS A;  3U8J A;  3PMZ A;  2WNJ A;  3EHZ A;  4TWH A;  2BYS A;  4ZRU A;  4ILC A;  2BG9 A;  2YMD A;  4QH4 A;  3U8M A;  3WTJ A;  4NZB A;  2C9T A;  3TLW A;  3T4M A;  5J0Z A;  2BYR A;  2YKS A;  4TNV A;  4XK9 A;  3UU3 A;  4ZK1 A;  5KZU A;  3ZKR A;  2WN9 A;  4IL4 A;  3WTH A;  5J5F A;  5LG3 A;  4AFG A;  5TVC A;  5AFM B;  5BP0 A;  3WTO A;  4UM3 S;  4QH1 A;  4WV9 A;  3GUA A;  2VL0 A;  3RHW A;  2W8G A;  4ALX A;  2XNV A;  2XZ6 A;  3UU5 A;  2XNU A;  2XYT A;  3UU8 A;  2Y7Y A;  4Z90 A;  2YN6 A;  4A97 A;  3U8L A;  5CO5 A;  2BYN A;  5J5G A;  5AFJ A;  4FRR A;  4NPP A;  2BYQ A;  2ZJV A;  3TLT A;  4HFH A;  3ZDH A;  4D01 A;  4BQT A;  4TWF A;  4XHE A;  3RIF A;  3SH1 A;  4LMK A;  4HFI A;  4LML A;  4ILB A;  5KE4 A;  3SIO A;  2BG9 C;  2XQ5 A;  2BJ0 A;  3SQ9 A;  5J5H A;  5AFK A;  3TLU A;  2XQA A;  2WNC A;  4LMJ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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