5J5HA

X-ray structure of acetylcholine binding protein (achbp) in complex with 6-(2-methoxyphenyl)-n4,n4-bis[(pyridin-2-yl)methyl]pyrimidine-2,4-diamine
Total Genus 51
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
51
sequence length
209
structure length
204
Chain Sequence
b'DDDKLDRADILYNIRQTSRPDVIPTQRDRPVAVSVSLKFINILEVNEITNEVDVVFWQQTTWSDRTLAWNSSHSPDQVSVPISSLWVPDLAAYNAISKPEVLTPQLARVVSDGEVLYMPSIRQRFSCDVSGVDTESGATCRIKIGSWTHHSREISVDPTDSEYFSQYSRFEILDVTQKKNSVTYSCCPEAYEDVEVSLNFRKKG'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Substituted 2-Aminopyrimidines Selective for alpha 7-Nicotinic Acetylcholine Receptor Activation and Association with Acetylcholine Binding Proteins.
pubmed doi rcsb
molecule keywords Acetylcholine-binding protein
source organism Lymnaea stagnalis
molecule tags Acetylcholine-binding protein
total genus 51
structure length 204
sequence length 209
chains with identical sequence B, C, D, E, F, G, H, I, J
ec nomenclature
pdb deposition date 2016-04-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02931 Neur_chan_LBD Neurotransmitter-gated ion-channel ligand binding domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.70.170.10 Mainly Beta Distorted Sandwich Acetylcholine Binding Protein; Chain: A, Neurotransmitter-gated ion-channel ligand-binding domain 5j5hA00
3TLUA 5JMEA 4UXUA 3LSVA 3RIAA 2BR8A 3SQ9A 3EHZA 5TVCA 5KE4A 1UV6A 1UW6A 4QABA 4ZJTA 3JAEA 3UU6A 4TWFA 4B5DA 2WNCA 4ZK1A 4UM1A 2YMEA 4QACA 5J5FA 2BG9E 4LMKA 4Z90A 3U8LA 5HEGA 4HFEA 4QH4A 3WIPA 2ZJVA 4NPPA 3U8MA 5L47A 2XQ8A 2X00D 5HEJA 5HCMA 4BQTA 3RI5A 4QH1A 2BYQA 2XNVA 3EI0A 5AFJA 2XQ5A 3SQ6A 4BFQA 2XZ5A 2XQ9A 1UX2A 3ZKRA 2XQ3A 3GUAA 4UM3P 5BRXA 4IL9A 2BG9C 4XHEA 3U8NA 5AINA 2BJ0A 4ZK4A 4ALXA 2WNJA 5J5GA 2WNLA 3TLVA 2W8FA 4WV9A 2VL0A 3WTIA 2XQ4A 4ZJSA 4D01A 3RQUA 3C84A 3PEOA 4AFTA 2Y56A 4PIRA 2BYPA 4QH5A 2XNUA 2WN9A 4ZZCA 2BG9A 5AFMA 3P50A 3UU8A 5IUXA 5KZUA 3JADA 4TWHA 3TLWA 2XQ6A 3SIOA 4ZZBA 4QAAA 2XNTA 4ILBA 5CO5A 2QC1B 3P4WA 2XQ7A 4IL4A 5L4HA 4ILCA 5BP0A 5SYOA 4EZ1A 4COFA 2BYSA 2X00A 5HEHA 3TLSA 3RIFA 2YN6A 3WTKA 4IREA 3SH1A 2UZ6A 4Z91A 5HCJA 3WTNA 4NZBA 3TLTA 5L4EA 2YKSA 4LMJA 2Y57A 5J0ZA 3ZDGA 5AFLA 4TWDA 3RHWA 2WZYA 2BR7A 3WTOA 3T4MA 3EAMA 4LMLA 4AFHA 5AFNA 2BG9B 4HFHA 5AFMB 2Y7YA 4A98A 4UY2A 2XZ6A 2ZJUA 1I9BA 5HEOA 4FRRA 3WTJA 4X5TA 5AFKA 3U8KA 3UQ7A 4HFDA 4HQPA 5LG3A 2PH9A 2XYSA 2XQAA 3IGQA 5HEUA 3WTMA 4TNWA 5LXBA 2W8GA 3UU4A 3WTHA 3UU5A 3WTLA 4ZRUA 3RQWA 4F8HA 3UUBA 4DBMA 3ZDHA 5J5IA 2BYRA 3PMZA 2PGZA 2Y54A 2YOEA 4HFIA 4TNVA 2C9TA 4ILAA 2BYNA 3C79A 3UQ4A 3UU3A 4UM3S 4ZR6A 5J5HA 3JAFA 4XK9A 4A97A 5AFHA 4AFGA 2XYTA 3U8JA 5BW2A 5CFBA 4UM3A 5FJVA 4HFBA 2YMDA 4HFCA 2Y58A
chains in the Genus database with same CATH superfamily
3TLUA 5JMEA 4UXUA 3LSVA 3RIAA 2BR8A 3SQ9A 3EHZA 5TVCA 5KE4A 1UV6A 1UW6A 4QABA 4ZJTA 3JAEA 3UU6A 4TWFA 4B5DA 2WNCA 4ZK1A 4UM1A 2YMEA 4QACA 5J5FA 2BG9E 4LMKA 4Z90A 3U8LA 5HEGA 4HFEA 4QH4A 3WIPA 2ZJVA 4NPPA 3U8MA 5L47A 2XQ8A 2X00D 5HEJA 5HCMA 4BQTA 3RI5A 4QH1A 2BYQA 2XNVA 3EI0A 5AFJA 2XQ5A 3SQ6A 4BFQA 2XZ5A 2XQ9A 1UX2A 3ZKRA 2XQ3A 3GUAA 4UM3P 5BRXA 4IL9A 2BG9C 4XHEA 3U8NA 5AINA 2BJ0A 4ZK4A 4ALXA 2WNJA 5J5GA 2WNLA 3TLVA 2W8FA 4WV9A 2VL0A 3WTIA 2XQ4A 4ZJSA 4D01A 3RQUA 3C84A 3PEOA 4AFTA 2Y56A 4PIRA 2BYPA 4QH5A 2XNUA 2WN9A 4ZZCA 2BG9A 5AFMA 3P50A 3UU8A 5IUXA 5KZUA 3JADA 4TWHA 3TLWA 2XQ6A 3SIOA 4ZZBA 4QAAA 2XNTA 4ILBA 5CO5A 2QC1B 3P4WA 2XQ7A 4IL4A 5L4HA 4ILCA 5BP0A 5SYOA 4EZ1A 4COFA 2BYSA 2X00A 5HEHA 3TLSA 3RIFA 2YN6A 3WTKA 4IREA 3SH1A 2UZ6A 4Z91A 5HCJA 3WTNA 4NZBA 3TLTA 5L4EA 2YKSA 4LMJA 2Y57A 5J0ZA 3ZDGA 5AFLA 4TWDA 3RHWA 2WZYA 2BR7A 3WTOA 3T4MA 3EAMA 4LMLA 4AFHA 5AFNA 2BG9B 4HFHA 5AFMB 2Y7YA 4A98A 4UY2A 2XZ6A 2ZJUA 1I9BA 5HEOA 4FRRA 3WTJA 4X5TA 5AFKA 3U8KA 3UQ7A 4HFDA 4HQPA 5LG3A 2PH9A 2XYSA 2XQAA 3IGQA 5HEUA 3WTMA 4TNWA 5LXBA 2W8GA 3UU4A 3WTHA 3UU5A 3WTLA 4ZRUA 3RQWA 4F8HA 3UUBA 4DBMA 3ZDHA 5J5IA 2BYRA 3PMZA 2PGZA 2Y54A 2YOEA 4HFIA 4TNVA 2C9TA 4ILAA 2BYNA 3C79A 3UQ4A 3UU3A 4UM3S 4ZR6A 5J5HA 3JAFA 4XK9A 4A97A 5AFHA 4AFGA 2XYTA 3U8JA 5BW2A 5CFBA 4UM3A 5FJVA 4HFBA 2YMDA 4HFCA 2Y58A
chains in the Genus database with same CATH topology
3TLUA 5JMEA 4UXUA 3LSVA 3RIAA 2BR8A 3SQ9A 3EHZA 5TVCA 5KE4A 1UV6A 1UW6A 4QABA 4ZJTA 3JAEA 3UU6A 4TWFA 4B5DA 2WNCA 4ZK1A 4UM1A 2YMEA 4QACA 5J5FA 2BG9E 4LMKA 4Z90A 3U8LA 5HEGA 4HFEA 4QH4A 3WIPA 2ZJVA 4NPPA 3U8MA 5L47A 2XQ8A 2X00D 5HEJA 5HCMA 4BQTA 3RI5A 4QH1A 2BYQA 2XNVA 3EI0A 5AFJA 2XQ5A 3SQ6A 4BFQA 2XZ5A 2XQ9A 1UX2A 3ZKRA 2XQ3A 3GUAA 4UM3P 5BRXA 4IL9A 2BG9C 4XHEA 3U8NA 5AINA 2BJ0A 4ZK4A 4ALXA 2WNJA 5J5GA 2WNLA 3TLVA 2W8FA 4WV9A 2VL0A 3WTIA 2XQ4A 4ZJSA 4D01A 3RQUA 3C84A 3PEOA 4AFTA 2Y56A 4PIRA 2BYPA 4QH5A 2XNUA 2WN9A 4ZZCA 2BG9A 5AFMA 3P50A 3UU8A 5IUXA 5KZUA 3JADA 4TWHA 3TLWA 2XQ6A 3SIOA 4ZZBA 4QAAA 2XNTA 4ILBA 5CO5A 2QC1B 3P4WA 2XQ7A 4IL4A 5L4HA 4ILCA 5BP0A 5SYOA 4EZ1A 4COFA 2BYSA 2X00A 5HEHA 3TLSA 3RIFA 2YN6A 3WTKA 4IREA 3SH1A 2UZ6A 4Z91A 5HCJA 3WTNA 4NZBA 3TLTA 5L4EA 2YKSA 4LMJA 2Y57A 5J0ZA 3ZDGA 5AFLA 4TWDA 3RHWA 2WZYA 2BR7A 3WTOA 3T4MA 3EAMA 4LMLA 4AFHA 5AFNA 2BG9B 4HFHA 5AFMB 2Y7YA 4A98A 4UY2A 2XZ6A 2ZJUA 1I9BA 5HEOA 4FRRA 3WTJA 4X5TA 5AFKA 3U8KA 3UQ7A 4HFDA 4HQPA 5LG3A 2PH9A 2XYSA 2XQAA 3IGQA 5HEUA 3WTMA 4TNWA 5LXBA 2W8GA 3UU4A 3WTHA 3UU5A 3WTLA 4ZRUA 3RQWA 4F8HA 3UUBA 4DBMA 3ZDHA 5J5IA 2BYRA 3PMZA 2PGZA 2Y54A 2YOEA 4HFIA 4TNVA 2C9TA 4ILAA 2BYNA 3C79A 3UQ4A 3UU3A 4UM3S 4ZR6A 5J5HA 3JAFA 4XK9A 4A97A 5AFHA 4AFGA 2XYTA 3U8JA 5BW2A 5CFBA 4UM3A 5FJVA 4HFBA 2YMDA 4HFCA 2Y58A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3TLU A;  5JME A;  4UXU A;  3LSV A;  3RIA A;  2BR8 A;  3SQ9 A;  3EHZ A;  5TVC A;  5KE4 A;  1UV6 A;  1UW6 A;  4QAB A;  4ZJT A;  3JAE A;  3UU6 A;  4TWF A;  4B5D A;  2WNC A;  4ZK1 A;  4UM1 A;  2YME A;  4QAC A;  5J5F A;  2BG9 E;  4LMK A;  4Z90 A;  3U8L A;  5HEG A;  4HFE A;  4QH4 A;  3WIP A;  2ZJV A;  4NPP A;  3U8M A;  5L47 A;  2XQ8 A;  2X00 D;  5HEJ A;  5HCM A;  4BQT A;  3RI5 A;  4QH1 A;  2BYQ A;  2XNV A;  3EI0 A;  5AFJ A;  2XQ5 A;  3SQ6 A;  4BFQ A;  2XZ5 A;  2XQ9 A;  1UX2 A;  3ZKR A;  2XQ3 A;  3GUA A;  4UM3 P;  5BRX A;  4IL9 A;  2BG9 C;  4XHE A;  3U8N A;  5AIN A;  2BJ0 A;  4ZK4 A;  4ALX A;  2WNJ A;  5J5G A;  2WNL A;  3TLV A;  2W8F A;  4WV9 A;  2VL0 A;  3WTI A;  2XQ4 A;  4ZJS A;  4D01 A;  3RQU A;  3C84 A;  3PEO A;  4AFT A;  2Y56 A;  4PIR A;  2BYP A;  4QH5 A;  2XNU A;  2WN9 A;  4ZZC A;  2BG9 A;  5AFM A;  3P50 A;  3UU8 A;  5IUX A;  5KZU A;  3JAD A;  4TWH A;  3TLW A;  2XQ6 A;  3SIO A;  4ZZB A;  4QAA A;  2XNT A;  4ILB A;  5CO5 A;  2QC1 B;  3P4W A;  2XQ7 A;  4IL4 A;  5L4H A;  4ILC A;  5BP0 A;  5SYO A;  4EZ1 A;  4COF A;  2BYS A;  2X00 A;  5HEH A;  3TLS A;  3RIF A;  2YN6 A;  3WTK A;  4IRE A;  3SH1 A;  2UZ6 A;  4Z91 A;  5HCJ A;  3WTN A;  4NZB A;  3TLT A;  5L4E A;  2YKS A;  4LMJ A;  2Y57 A;  5J0Z A;  3ZDG A;  5AFL A;  4TWD A;  3RHW A;  2WZY A;  2BR7 A;  3WTO A;  3T4M A;  3EAM A;  4LML A;  4AFH A;  5AFN A;  2BG9 B;  4HFH A;  5AFM B;  2Y7Y A;  4A98 A;  4UY2 A;  2XZ6 A;  2ZJU A;  1I9B A;  5HEO A;  4FRR A;  3WTJ A;  4X5T A;  5AFK A;  3U8K A;  3UQ7 A;  4HFD A;  4HQP A;  5LG3 A;  2PH9 A;  2XYS A;  2XQA A;  3IGQ A;  5HEU A;  3WTM A;  4TNW A;  5LXB A;  2W8G A;  3UU4 A;  3WTH A;  3UU5 A;  3WTL A;  4ZRU A;  3RQW A;  4F8H A;  3UUB A;  4DBM A;  3ZDH A;  5J5I A;  2BYR A;  3PMZ A;  2PGZ A;  2Y54 A;  2YOE A;  4HFI A;  4TNV A;  2C9T A;  4ILA A;  2BYN A;  3C79 A;  3UQ4 A;  3UU3 A;  4UM3 S;  4ZR6 A;  5J5H A;  3JAF A;  4XK9 A;  4A97 A;  5AFH A;  4AFG A;  2XYT A;  3U8J A;  5BW2 A;  5CFB A;  4UM3 A;  5FJV A;  4HFB A;  2YMD A;  4HFC A;  2Y58 A; 
#chains in the Genus database with same CATH topology
 3TLU A;  5JME A;  4UXU A;  3LSV A;  3RIA A;  2BR8 A;  3SQ9 A;  3EHZ A;  5TVC A;  5KE4 A;  1UV6 A;  1UW6 A;  4QAB A;  4ZJT A;  3JAE A;  3UU6 A;  4TWF A;  4B5D A;  2WNC A;  4ZK1 A;  4UM1 A;  2YME A;  4QAC A;  5J5F A;  2BG9 E;  4LMK A;  4Z90 A;  3U8L A;  5HEG A;  4HFE A;  4QH4 A;  3WIP A;  2ZJV A;  4NPP A;  3U8M A;  5L47 A;  2XQ8 A;  2X00 D;  5HEJ A;  5HCM A;  4BQT A;  3RI5 A;  4QH1 A;  2BYQ A;  2XNV A;  3EI0 A;  5AFJ A;  2XQ5 A;  3SQ6 A;  4BFQ A;  2XZ5 A;  2XQ9 A;  1UX2 A;  3ZKR A;  2XQ3 A;  3GUA A;  4UM3 P;  5BRX A;  4IL9 A;  2BG9 C;  4XHE A;  3U8N A;  5AIN A;  2BJ0 A;  4ZK4 A;  4ALX A;  2WNJ A;  5J5G A;  2WNL A;  3TLV A;  2W8F A;  4WV9 A;  2VL0 A;  3WTI A;  2XQ4 A;  4ZJS A;  4D01 A;  3RQU A;  3C84 A;  3PEO A;  4AFT A;  2Y56 A;  4PIR A;  2BYP A;  4QH5 A;  2XNU A;  2WN9 A;  4ZZC A;  2BG9 A;  5AFM A;  3P50 A;  3UU8 A;  5IUX A;  5KZU A;  3JAD A;  4TWH A;  3TLW A;  2XQ6 A;  3SIO A;  4ZZB A;  4QAA A;  2XNT A;  4ILB A;  5CO5 A;  2QC1 B;  3P4W A;  2XQ7 A;  4IL4 A;  5L4H A;  4ILC A;  5BP0 A;  5SYO A;  4EZ1 A;  4COF A;  2BYS A;  2X00 A;  5HEH A;  3TLS A;  3RIF A;  2YN6 A;  3WTK A;  4IRE A;  3SH1 A;  2UZ6 A;  4Z91 A;  5HCJ A;  3WTN A;  4NZB A;  3TLT A;  5L4E A;  2YKS A;  4LMJ A;  2Y57 A;  5J0Z A;  3ZDG A;  5AFL A;  4TWD A;  3RHW A;  2WZY A;  2BR7 A;  3WTO A;  3T4M A;  3EAM A;  4LML A;  4AFH A;  5AFN A;  2BG9 B;  4HFH A;  5AFM B;  2Y7Y A;  4A98 A;  4UY2 A;  2XZ6 A;  2ZJU A;  1I9B A;  5HEO A;  4FRR A;  3WTJ A;  4X5T A;  5AFK A;  3U8K A;  3UQ7 A;  4HFD A;  4HQP A;  5LG3 A;  2PH9 A;  2XYS A;  2XQA A;  3IGQ A;  5HEU A;  3WTM A;  4TNW A;  5LXB A;  2W8G A;  3UU4 A;  3WTH A;  3UU5 A;  3WTL A;  4ZRU A;  3RQW A;  4F8H A;  3UUB A;  4DBM A;  3ZDH A;  5J5I A;  2BYR A;  3PMZ A;  2PGZ A;  2Y54 A;  2YOE A;  4HFI A;  4TNV A;  2C9T A;  4ILA A;  2BYN A;  3C79 A;  3UQ4 A;  3UU3 A;  4UM3 S;  4ZR6 A;  5J5H A;  3JAF A;  4XK9 A;  4A97 A;  5AFH A;  4AFG A;  2XYT A;  3U8J A;  5BW2 A;  5CFB A;  4UM3 A;  5FJV A;  4HFB A;  2YMD A;  4HFC A;  2Y58 A; 
#chains in the Genus database with same CATH homology
 3TLU A;  5JME A;  4UXU A;  3LSV A;  3RIA A;  2BR8 A;  3SQ9 A;  3EHZ A;  5TVC A;  5KE4 A;  1UV6 A;  1UW6 A;  4QAB A;  4ZJT A;  3JAE A;  3UU6 A;  4TWF A;  4B5D A;  2WNC A;  4ZK1 A;  4UM1 A;  2YME A;  4QAC A;  5J5F A;  2BG9 E;  4LMK A;  4Z90 A;  3U8L A;  5HEG A;  4HFE A;  4QH4 A;  3WIP A;  2ZJV A;  4NPP A;  3U8M A;  5L47 A;  2XQ8 A;  2X00 D;  5HEJ A;  5HCM A;  4BQT A;  3RI5 A;  4QH1 A;  2BYQ A;  2XNV A;  3EI0 A;  5AFJ A;  2XQ5 A;  3SQ6 A;  4BFQ A;  2XZ5 A;  2XQ9 A;  1UX2 A;  3ZKR A;  2XQ3 A;  3GUA A;  4UM3 P;  5BRX A;  4IL9 A;  2BG9 C;  4XHE A;  3U8N A;  5AIN A;  2BJ0 A;  4ZK4 A;  4ALX A;  2WNJ A;  5J5G A;  2WNL A;  3TLV A;  2W8F A;  4WV9 A;  2VL0 A;  3WTI A;  2XQ4 A;  4ZJS A;  4D01 A;  3RQU A;  3C84 A;  3PEO A;  4AFT A;  2Y56 A;  4PIR A;  2BYP A;  4QH5 A;  2XNU A;  2WN9 A;  4ZZC A;  2BG9 A;  5AFM A;  3P50 A;  3UU8 A;  5IUX A;  5KZU A;  3JAD A;  4TWH A;  3TLW A;  2XQ6 A;  3SIO A;  4ZZB A;  4QAA A;  2XNT A;  4ILB A;  5CO5 A;  2QC1 B;  3P4W A;  2XQ7 A;  4IL4 A;  5L4H A;  4ILC A;  5BP0 A;  5SYO A;  4EZ1 A;  4COF A;  2BYS A;  2X00 A;  5HEH A;  3TLS A;  3RIF A;  2YN6 A;  3WTK A;  4IRE A;  3SH1 A;  2UZ6 A;  4Z91 A;  5HCJ A;  3WTN A;  4NZB A;  3TLT A;  5L4E A;  2YKS A;  4LMJ A;  2Y57 A;  5J0Z A;  3ZDG A;  5AFL A;  4TWD A;  3RHW A;  2WZY A;  2BR7 A;  3WTO A;  3T4M A;  3EAM A;  4LML A;  4AFH A;  5AFN A;  2BG9 B;  4HFH A;  5AFM B;  2Y7Y A;  4A98 A;  4UY2 A;  2XZ6 A;  2ZJU A;  1I9B A;  5HEO A;  4FRR A;  3WTJ A;  4X5T A;  5AFK A;  3U8K A;  3UQ7 A;  4HFD A;  4HQP A;  5LG3 A;  2PH9 A;  2XYS A;  2XQA A;  3IGQ A;  5HEU A;  3WTM A;  4TNW A;  5LXB A;  2W8G A;  3UU4 A;  3WTH A;  3UU5 A;  3WTL A;  4ZRU A;  3RQW A;  4F8H A;  3UUB A;  4DBM A;  3ZDH A;  5J5I A;  2BYR A;  3PMZ A;  2PGZ A;  2Y54 A;  2YOE A;  4HFI A;  4TNV A;  2C9T A;  4ILA A;  2BYN A;  3C79 A;  3UQ4 A;  3UU3 A;  4UM3 S;  4ZR6 A;  5J5H A;  3JAF A;  4XK9 A;  4A97 A;  5AFH A;  4AFG A;  2XYT A;  3U8J A;  5BW2 A;  5CFB A;  4UM3 A;  5FJV A;  4HFB A;  2YMD A;  4HFC A;  2Y58 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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