5J5HA

X-ray structure of acetylcholine binding protein (achbp) in complex with 6-(2-methoxyphenyl)-n4,n4-bis[(pyridin-2-yl)methyl]pyrimidine-2,4-diamine
Total Genus 51
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
51
sequence length
209
structure length
204
Chain Sequence
DDDKLDRADILYNIRQTSRPDVIPTQRDRPVAVSVSLKFINILEVNEITNEVDVVFWQQTTWSDRTLAWNSSHSPDQVSVPISSLWVPDLAAYNAISKPEVLTPQLARVVSDGEVLYMPSIRQRFSCDVSGVDTESGATCRIKIGSWTHHSREISVDPTDSEYFSQYSRFEILDVTQKKNSVTYSCCPEAYEDVEVSLNFRKKG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Acetylcholine-binding protein
source organism Lymnaea stagnalis
publication title Substituted 2-Aminopyrimidines Selective for alpha 7-Nicotinic Acetylcholine Receptor Activation and Association with Acetylcholine Binding Proteins.
pubmed doi rcsb
molecule keywords Acetylcholine-binding protein
total genus 51
structure length 204
sequence length 209
chains with identical sequence B, C, D, E, F, G, H, I, J
ec nomenclature
pdb deposition date 2016-04-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02931 Neur_chan_LBD Neurotransmitter-gated ion-channel ligand binding domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.70.170.10 Mainly Beta Distorted Sandwich Acetylcholine Binding Protein; Chain: A, Neurotransmitter-gated ion-channel ligand-binding domain 5j5hA00
2XZ5A 2ZJVA 2Y58A 4QACA 3P50A 4Z90A 2WZYA 4AFHA 5SYOA 3SQ6A 3WTOA 4TWFA 4UY2A 4UXUA 5HEGA 5BRXA 1UX2A 4A97A 2Y7YA 3UU8A 3UQ7A 3UQ4A 3UU4A 4IL9A 4X5TA 4TWDA 3TLVA 4D01A 4LMJA 5AFMB 4B5DA 3WTHA 5J5GA 4ZK1A 2W8FA 2UZ6A 4ZRUA 4QH1A 2PH9A 2WNLA 5LG3A 5L4EA 5AFHA 2BG9B 4HFIA 3RQWA 2X00D 2WNCA 5HEUA 3T4MA 4HQPA 2BYNA 5IUXA 3RQUA 4BQTA 3UU6A 5LXBA 5AFMA 3U8KA 3JAEA 4UM3S 2YMDA 1UV6A 3UU3A 2BG9E 4ZJTA 4EZ1A 5AFNA 3U8NA 2XQ7A 4XK9A 2BG9A 4QAAA 2PGZA 4NZBA 3WTNA 4FRRA 5L47A 4COFA 2XQAA 4ILCA 4ZZBA 4TNWA 4LMKA 5HCMA 2XYSA 4XHEA 4Z91A 4UM3P 2XQ8A 2XQ4A 5AFLA 5AINA 2C9TA 2BR8A 3PEOA 2BYRA 4HFBA 3TLUA 4ZZCA 2XNTA 4ILAA 1I9BA 5JMEA 4ZR6A 5J5HA 3RI5A 4UM3A 2YN6A 2XNUA 5HCJA 5KE4A 4ZK4A 5AFKA 2XZ6A 4QH5A 3TLWA 3RIAA 4QH4A 2Y54A 3TLSA 3JAFA 2BR7A 5J5FA 3SH1A 2BG9C 4IREA 2X00A 3WTMA 2XQ6A 5BW2A 4HFCA 3C84A 4TWHA 3C79A 3U8LA 2Y57A 3WTJA 2BYPA 3EI0A 5CFBA 2WN9A 5J5IA 2QC1B 2YMEA 4LMLA 3ZDHA 4HFDA 2BYSA 4UM1A 3WTLA 2W8GA 3PMZA 2XQ5A 3RHWA 5HEJA 4WV9A 4F8HA 2XYTA 4HFHA 4BFQA 5J0ZA 4IL4A 4AFGA 3LSVA 3P4WA 1UW6A 3WIPA 4ALXA 5CO5A 2XQ9A 4A98A 3ZDGA 4ZJSA 2BJ0A 5HEHA 3WTIA 4AFTA 2VL0A 3EHZA 4ILBA 2BYQA 2YKSA 5HEOA 2ZJUA 4NPPA 3SIOA 3U8JA 3GUAA 2Y56A 2XNVA 5BP0A 4HFEA 4QABA 5KZUA 5L4HA 3JADA 2XQ3A 3UU5A 3EAMA 3ZKRA 4PIRA 4TNVA 5FJVA 2WNJA 5AFJA 3SQ9A 3UUBA 4DBMA 3IGQA 3RIFA 2YOEA 3TLTA 5TVCA 3WTKA 3U8MA
chains in the Genus database with same CATH superfamily
2XZ5A 2ZJVA 2Y58A 4QACA 3P50A 4Z90A 2WZYA 4AFHA 5SYOA 3SQ6A 3WTOA 4TWFA 4UY2A 4UXUA 5HEGA 5BRXA 1UX2A 4A97A 2Y7YA 3UU8A 3UQ7A 3UQ4A 3UU4A 4IL9A 4X5TA 4TWDA 3TLVA 4D01A 4LMJA 5AFMB 4B5DA 3WTHA 5J5GA 4ZK1A 2W8FA 2UZ6A 4ZRUA 4QH1A 2PH9A 2WNLA 5LG3A 5L4EA 5AFHA 2BG9B 4HFIA 3RQWA 2X00D 2WNCA 5HEUA 3T4MA 4HQPA 2BYNA 5IUXA 3RQUA 4BQTA 3UU6A 5LXBA 5AFMA 3U8KA 3JAEA 4UM3S 2YMDA 1UV6A 3UU3A 2BG9E 4ZJTA 4EZ1A 5AFNA 3U8NA 2XQ7A 4XK9A 2BG9A 4QAAA 2PGZA 4NZBA 3WTNA 4FRRA 5L47A 4COFA 2XQAA 4ILCA 4ZZBA 4TNWA 4LMKA 5HCMA 2XYSA 4XHEA 4Z91A 4UM3P 2XQ8A 2XQ4A 5AFLA 5AINA 2C9TA 2BR8A 3PEOA 2BYRA 4HFBA 3TLUA 4ZZCA 2XNTA 4ILAA 1I9BA 5JMEA 4ZR6A 5J5HA 3RI5A 4UM3A 2YN6A 2XNUA 5HCJA 5KE4A 4ZK4A 5AFKA 2XZ6A 4QH5A 3TLWA 3RIAA 4QH4A 2Y54A 3TLSA 3JAFA 2BR7A 5J5FA 3SH1A 2BG9C 4IREA 2X00A 3WTMA 2XQ6A 5BW2A 4HFCA 3C84A 4TWHA 3C79A 3U8LA 2Y57A 3WTJA 2BYPA 3EI0A 5CFBA 2WN9A 5J5IA 2QC1B 2YMEA 4LMLA 3ZDHA 4HFDA 2BYSA 4UM1A 3WTLA 2W8GA 3PMZA 2XQ5A 3RHWA 5HEJA 4WV9A 4F8HA 2XYTA 4HFHA 4BFQA 5J0ZA 4IL4A 4AFGA 3LSVA 3P4WA 1UW6A 3WIPA 4ALXA 5CO5A 2XQ9A 4A98A 3ZDGA 4ZJSA 2BJ0A 5HEHA 3WTIA 4AFTA 2VL0A 3EHZA 4ILBA 2BYQA 2YKSA 5HEOA 2ZJUA 4NPPA 3SIOA 3U8JA 3GUAA 2Y56A 2XNVA 5BP0A 4HFEA 4QABA 5KZUA 5L4HA 3JADA 2XQ3A 3UU5A 3EAMA 3ZKRA 4PIRA 4TNVA 5FJVA 2WNJA 5AFJA 3SQ9A 3UUBA 4DBMA 3IGQA 3RIFA 2YOEA 3TLTA 5TVCA 3WTKA 3U8MA
chains in the Genus database with same CATH topology
2XZ5A 2ZJVA 2Y58A 4QACA 3P50A 4Z90A 2WZYA 4AFHA 5SYOA 3SQ6A 3WTOA 4TWFA 4UY2A 4UXUA 5HEGA 5BRXA 1UX2A 4A97A 2Y7YA 3UU8A 3UQ7A 3UQ4A 3UU4A 4IL9A 4X5TA 4TWDA 3TLVA 4D01A 4LMJA 5AFMB 4B5DA 3WTHA 5J5GA 4ZK1A 2W8FA 2UZ6A 4ZRUA 4QH1A 2PH9A 2WNLA 5LG3A 5L4EA 5AFHA 2BG9B 4HFIA 3RQWA 2X00D 2WNCA 5HEUA 3T4MA 4HQPA 2BYNA 5IUXA 3RQUA 4BQTA 3UU6A 5LXBA 5AFMA 3U8KA 3JAEA 4UM3S 2YMDA 1UV6A 3UU3A 2BG9E 4ZJTA 4EZ1A 5AFNA 3U8NA 2XQ7A 4XK9A 2BG9A 4QAAA 2PGZA 4NZBA 3WTNA 4FRRA 5L47A 4COFA 2XQAA 4ILCA 4ZZBA 4TNWA 4LMKA 5HCMA 2XYSA 4XHEA 4Z91A 4UM3P 2XQ8A 2XQ4A 5AFLA 5AINA 2C9TA 2BR8A 3PEOA 2BYRA 4HFBA 3TLUA 4ZZCA 2XNTA 4ILAA 1I9BA 5JMEA 4ZR6A 5J5HA 3RI5A 4UM3A 2YN6A 2XNUA 5HCJA 5KE4A 4ZK4A 5AFKA 2XZ6A 4QH5A 3TLWA 3RIAA 4QH4A 2Y54A 3TLSA 3JAFA 2BR7A 5J5FA 3SH1A 2BG9C 4IREA 2X00A 3WTMA 2XQ6A 5BW2A 4HFCA 3C84A 4TWHA 3C79A 3U8LA 2Y57A 3WTJA 2BYPA 3EI0A 5CFBA 2WN9A 5J5IA 2QC1B 2YMEA 4LMLA 3ZDHA 4HFDA 2BYSA 4UM1A 3WTLA 2W8GA 3PMZA 2XQ5A 3RHWA 5HEJA 4WV9A 4F8HA 2XYTA 4HFHA 4BFQA 5J0ZA 4IL4A 4AFGA 3LSVA 3P4WA 1UW6A 3WIPA 4ALXA 5CO5A 2XQ9A 4A98A 3ZDGA 4ZJSA 2BJ0A 5HEHA 3WTIA 4AFTA 2VL0A 3EHZA 4ILBA 2BYQA 2YKSA 5HEOA 2ZJUA 4NPPA 3SIOA 3U8JA 3GUAA 2Y56A 2XNVA 5BP0A 4HFEA 4QABA 5KZUA 5L4HA 3JADA 2XQ3A 3UU5A 3EAMA 3ZKRA 4PIRA 4TNVA 5FJVA 2WNJA 5AFJA 3SQ9A 3UUBA 4DBMA 3IGQA 3RIFA 2YOEA 3TLTA 5TVCA 3WTKA 3U8MA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2XZ5 A;  2ZJV A;  2Y58 A;  4QAC A;  3P50 A;  4Z90 A;  2WZY A;  4AFH A;  5SYO A;  3SQ6 A;  3WTO A;  4TWF A;  4UY2 A;  4UXU A;  5HEG A;  5BRX A;  1UX2 A;  4A97 A;  2Y7Y A;  3UU8 A;  3UQ7 A;  3UQ4 A;  3UU4 A;  4IL9 A;  4X5T A;  4TWD A;  3TLV A;  4D01 A;  4LMJ A;  5AFM B;  4B5D A;  3WTH A;  5J5G A;  4ZK1 A;  2W8F A;  2UZ6 A;  4ZRU A;  4QH1 A;  2PH9 A;  2WNL A;  5LG3 A;  5L4E A;  5AFH A;  2BG9 B;  4HFI A;  3RQW A;  2X00 D;  2WNC A;  5HEU A;  3T4M A;  4HQP A;  2BYN A;  5IUX A;  3RQU A;  4BQT A;  3UU6 A;  5LXB A;  5AFM A;  3U8K A;  3JAE A;  4UM3 S;  2YMD A;  1UV6 A;  3UU3 A;  2BG9 E;  4ZJT A;  4EZ1 A;  5AFN A;  3U8N A;  2XQ7 A;  4XK9 A;  2BG9 A;  4QAA A;  2PGZ A;  4NZB A;  3WTN A;  4FRR A;  5L47 A;  4COF A;  2XQA A;  4ILC A;  4ZZB A;  4TNW A;  4LMK A;  5HCM A;  2XYS A;  4XHE A;  4Z91 A;  4UM3 P;  2XQ8 A;  2XQ4 A;  5AFL A;  5AIN A;  2C9T A;  2BR8 A;  3PEO A;  2BYR A;  4HFB A;  3TLU A;  4ZZC A;  2XNT A;  4ILA A;  1I9B A;  5JME A;  4ZR6 A;  5J5H A;  3RI5 A;  4UM3 A;  2YN6 A;  2XNU A;  5HCJ A;  5KE4 A;  4ZK4 A;  5AFK A;  2XZ6 A;  4QH5 A;  3TLW A;  3RIA A;  4QH4 A;  2Y54 A;  3TLS A;  3JAF A;  2BR7 A;  5J5F A;  3SH1 A;  2BG9 C;  4IRE A;  2X00 A;  3WTM A;  2XQ6 A;  5BW2 A;  4HFC A;  3C84 A;  4TWH A;  3C79 A;  3U8L A;  2Y57 A;  3WTJ A;  2BYP A;  3EI0 A;  5CFB A;  2WN9 A;  5J5I A;  2QC1 B;  2YME A;  4LML A;  3ZDH A;  4HFD A;  2BYS A;  4UM1 A;  3WTL A;  2W8G A;  3PMZ A;  2XQ5 A;  3RHW A;  5HEJ A;  4WV9 A;  4F8H A;  2XYT A;  4HFH A;  4BFQ A;  5J0Z A;  4IL4 A;  4AFG A;  3LSV A;  3P4W A;  1UW6 A;  3WIP A;  4ALX A;  5CO5 A;  2XQ9 A;  4A98 A;  3ZDG A;  4ZJS A;  2BJ0 A;  5HEH A;  3WTI A;  4AFT A;  2VL0 A;  3EHZ A;  4ILB A;  2BYQ A;  2YKS A;  5HEO A;  2ZJU A;  4NPP A;  3SIO A;  3U8J A;  3GUA A;  2Y56 A;  2XNV A;  5BP0 A;  4HFE A;  4QAB A;  5KZU A;  5L4H A;  3JAD A;  2XQ3 A;  3UU5 A;  3EAM A;  3ZKR A;  4PIR A;  4TNV A;  5FJV A;  2WNJ A;  5AFJ A;  3SQ9 A;  3UUB A;  4DBM A;  3IGQ A;  3RIF A;  2YOE A;  3TLT A;  5TVC A;  3WTK A;  3U8M A; 
#chains in the Genus database with same CATH topology
 2XZ5 A;  2ZJV A;  2Y58 A;  4QAC A;  3P50 A;  4Z90 A;  2WZY A;  4AFH A;  5SYO A;  3SQ6 A;  3WTO A;  4TWF A;  4UY2 A;  4UXU A;  5HEG A;  5BRX A;  1UX2 A;  4A97 A;  2Y7Y A;  3UU8 A;  3UQ7 A;  3UQ4 A;  3UU4 A;  4IL9 A;  4X5T A;  4TWD A;  3TLV A;  4D01 A;  4LMJ A;  5AFM B;  4B5D A;  3WTH A;  5J5G A;  4ZK1 A;  2W8F A;  2UZ6 A;  4ZRU A;  4QH1 A;  2PH9 A;  2WNL A;  5LG3 A;  5L4E A;  5AFH A;  2BG9 B;  4HFI A;  3RQW A;  2X00 D;  2WNC A;  5HEU A;  3T4M A;  4HQP A;  2BYN A;  5IUX A;  3RQU A;  4BQT A;  3UU6 A;  5LXB A;  5AFM A;  3U8K A;  3JAE A;  4UM3 S;  2YMD A;  1UV6 A;  3UU3 A;  2BG9 E;  4ZJT A;  4EZ1 A;  5AFN A;  3U8N A;  2XQ7 A;  4XK9 A;  2BG9 A;  4QAA A;  2PGZ A;  4NZB A;  3WTN A;  4FRR A;  5L47 A;  4COF A;  2XQA A;  4ILC A;  4ZZB A;  4TNW A;  4LMK A;  5HCM A;  2XYS A;  4XHE A;  4Z91 A;  4UM3 P;  2XQ8 A;  2XQ4 A;  5AFL A;  5AIN A;  2C9T A;  2BR8 A;  3PEO A;  2BYR A;  4HFB A;  3TLU A;  4ZZC A;  2XNT A;  4ILA A;  1I9B A;  5JME A;  4ZR6 A;  5J5H A;  3RI5 A;  4UM3 A;  2YN6 A;  2XNU A;  5HCJ A;  5KE4 A;  4ZK4 A;  5AFK A;  2XZ6 A;  4QH5 A;  3TLW A;  3RIA A;  4QH4 A;  2Y54 A;  3TLS A;  3JAF A;  2BR7 A;  5J5F A;  3SH1 A;  2BG9 C;  4IRE A;  2X00 A;  3WTM A;  2XQ6 A;  5BW2 A;  4HFC A;  3C84 A;  4TWH A;  3C79 A;  3U8L A;  2Y57 A;  3WTJ A;  2BYP A;  3EI0 A;  5CFB A;  2WN9 A;  5J5I A;  2QC1 B;  2YME A;  4LML A;  3ZDH A;  4HFD A;  2BYS A;  4UM1 A;  3WTL A;  2W8G A;  3PMZ A;  2XQ5 A;  3RHW A;  5HEJ A;  4WV9 A;  4F8H A;  2XYT A;  4HFH A;  4BFQ A;  5J0Z A;  4IL4 A;  4AFG A;  3LSV A;  3P4W A;  1UW6 A;  3WIP A;  4ALX A;  5CO5 A;  2XQ9 A;  4A98 A;  3ZDG A;  4ZJS A;  2BJ0 A;  5HEH A;  3WTI A;  4AFT A;  2VL0 A;  3EHZ A;  4ILB A;  2BYQ A;  2YKS A;  5HEO A;  2ZJU A;  4NPP A;  3SIO A;  3U8J A;  3GUA A;  2Y56 A;  2XNV A;  5BP0 A;  4HFE A;  4QAB A;  5KZU A;  5L4H A;  3JAD A;  2XQ3 A;  3UU5 A;  3EAM A;  3ZKR A;  4PIR A;  4TNV A;  5FJV A;  2WNJ A;  5AFJ A;  3SQ9 A;  3UUB A;  4DBM A;  3IGQ A;  3RIF A;  2YOE A;  3TLT A;  5TVC A;  3WTK A;  3U8M A; 
#chains in the Genus database with same CATH homology
 2XZ5 A;  2ZJV A;  2Y58 A;  4QAC A;  3P50 A;  4Z90 A;  2WZY A;  4AFH A;  5SYO A;  3SQ6 A;  3WTO A;  4TWF A;  4UY2 A;  4UXU A;  5HEG A;  5BRX A;  1UX2 A;  4A97 A;  2Y7Y A;  3UU8 A;  3UQ7 A;  3UQ4 A;  3UU4 A;  4IL9 A;  4X5T A;  4TWD A;  3TLV A;  4D01 A;  4LMJ A;  5AFM B;  4B5D A;  3WTH A;  5J5G A;  4ZK1 A;  2W8F A;  2UZ6 A;  4ZRU A;  4QH1 A;  2PH9 A;  2WNL A;  5LG3 A;  5L4E A;  5AFH A;  2BG9 B;  4HFI A;  3RQW A;  2X00 D;  2WNC A;  5HEU A;  3T4M A;  4HQP A;  2BYN A;  5IUX A;  3RQU A;  4BQT A;  3UU6 A;  5LXB A;  5AFM A;  3U8K A;  3JAE A;  4UM3 S;  2YMD A;  1UV6 A;  3UU3 A;  2BG9 E;  4ZJT A;  4EZ1 A;  5AFN A;  3U8N A;  2XQ7 A;  4XK9 A;  2BG9 A;  4QAA A;  2PGZ A;  4NZB A;  3WTN A;  4FRR A;  5L47 A;  4COF A;  2XQA A;  4ILC A;  4ZZB A;  4TNW A;  4LMK A;  5HCM A;  2XYS A;  4XHE A;  4Z91 A;  4UM3 P;  2XQ8 A;  2XQ4 A;  5AFL A;  5AIN A;  2C9T A;  2BR8 A;  3PEO A;  2BYR A;  4HFB A;  3TLU A;  4ZZC A;  2XNT A;  4ILA A;  1I9B A;  5JME A;  4ZR6 A;  5J5H A;  3RI5 A;  4UM3 A;  2YN6 A;  2XNU A;  5HCJ A;  5KE4 A;  4ZK4 A;  5AFK A;  2XZ6 A;  4QH5 A;  3TLW A;  3RIA A;  4QH4 A;  2Y54 A;  3TLS A;  3JAF A;  2BR7 A;  5J5F A;  3SH1 A;  2BG9 C;  4IRE A;  2X00 A;  3WTM A;  2XQ6 A;  5BW2 A;  4HFC A;  3C84 A;  4TWH A;  3C79 A;  3U8L A;  2Y57 A;  3WTJ A;  2BYP A;  3EI0 A;  5CFB A;  2WN9 A;  5J5I A;  2QC1 B;  2YME A;  4LML A;  3ZDH A;  4HFD A;  2BYS A;  4UM1 A;  3WTL A;  2W8G A;  3PMZ A;  2XQ5 A;  3RHW A;  5HEJ A;  4WV9 A;  4F8H A;  2XYT A;  4HFH A;  4BFQ A;  5J0Z A;  4IL4 A;  4AFG A;  3LSV A;  3P4W A;  1UW6 A;  3WIP A;  4ALX A;  5CO5 A;  2XQ9 A;  4A98 A;  3ZDG A;  4ZJS A;  2BJ0 A;  5HEH A;  3WTI A;  4AFT A;  2VL0 A;  3EHZ A;  4ILB A;  2BYQ A;  2YKS A;  5HEO A;  2ZJU A;  4NPP A;  3SIO A;  3U8J A;  3GUA A;  2Y56 A;  2XNV A;  5BP0 A;  4HFE A;  4QAB A;  5KZU A;  5L4H A;  3JAD A;  2XQ3 A;  3UU5 A;  3EAM A;  3ZKR A;  4PIR A;  4TNV A;  5FJV A;  2WNJ A;  5AFJ A;  3SQ9 A;  3UUB A;  4DBM A;  3IGQ A;  3RIF A;  2YOE A;  3TLT A;  5TVC A;  3WTK A;  3U8M A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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