4ZK4A

Crystal structure of a chimeric acetylcholine binding protein from aplysia californica (ac-achbp) containing loop c from the human alpha 3 nicotinic acetylcholine receptor in complex with 7-(5-isopropoxy-pyridin-3-yl)-1-methyl-1,7-diaza-spiro[4.4]nonane
Total Genus 48
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
48
sequence length
215
structure length
211
Chain Sequence
DDDKLHSQANLMRLKSDLFNYPGPTKDDPLTVTLGFTLQDIVKADSSTNEVDLVYWEQQRWKLNSLMWDPNEYGNITDFRTSAADIWTPDITAYSSTRPVQVLSPQIAVVTHDGSVMFIPAQRLSFMCDPTGVDSEEGATCAVKFGSWVYSGFEIDLKTDTDQVDLSSYYASSKYEILSATQYKHDIKYNCCEEIYPDVVLVVKFRERRAG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Acetylcholine binding protein
molecule keywords soluble acetylcholine receptor, neuronal acetylcholine recep
publication title Crystal structure of a chimeric acetylcholine binding protein from Aplysia californica (Ac-AChBP) containing loop C from the human alpha 3 nicotinic acetylcholine receptor in complex with 7-(5-isopropoxy-pyridin-3-yl)-1-methyl-1,7-diaza-spiro[4.4]nonane.
rcsb
source organism Aplysia californica
total genus 48
structure length 211
sequence length 215
chains with identical sequence B, C, D, E
ec nomenclature
pdb deposition date 2015-04-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02931 Neur_chan_LBD Neurotransmitter-gated ion-channel ligand binding domain
A PF02931 Neur_chan_LBD Neurotransmitter-gated ion-channel ligand binding domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.70.170.10 Mainly Beta Distorted Sandwich Acetylcholine Binding Protein; Chain: A, Neurotransmitter-gated ion-channel ligand-binding domain 4zk4A00
4HFEA 4UM3P 2Y54A 3TLVA 3WTOA 3JADA 2YMDA 2Y7YA 4UM1A 4FRRA 2BYRA 4DBMA 4COFA 4ZK1A 5HEUA 5J0ZA 5J5FA 3WTLA 4ZJTA 3RI5A 2BR7A 3U8NA 5HCJA 3U8JA 2BG9B 5TVCA 3RHWA 4EZ1A 3EI0A 4HFHA 4ALXA 5AFKA 5FJVA 4TWDA 3UQ4A 5AFNA 2C9TA 5HEJA 2BG9C 4BFQA 2BG9E 3UU3A 2XQ6A 5AINA 2WNLA 4UY2A 4B5DA 5BW2A 3U8MA 2XQ8A 4UM3A 4QABA 4UXUA 5J5GA 3PMZA 4PIRA 5HEOA 3WTHA 3ZKRA 3WTNA 4F8HA 2VL0A 4WV9A 4NPPA 3JAFA 5L4EA 1UW6A 4UM3S 4IL4A 4D01A 4ZK4A 3WTIA 2WNJA 4ZR6A 5AFHA 3EHZA 3UU6A 5LG3A 5L4HA 4ILBA 2XNVA 4AFHA 2BR8A 2XYTA 5J5IA 3JAEA 4TWFA 2XQAA 4AFGA 4ZZCA 3SQ6A 5J5HA 2XQ7A 2WNCA 4X5TA 2ZJUA 3U8KA 2PH9A 2YMEA 3UU5A 3RQUA 5BRXA 5SYOA 4QH4A 3WTKA 5AFLA 3RIFA 4ZZBA 5HCMA 2Y58A 4NZBA 3U8LA 5KZUA 4HFDA 4HQPA 4QH5A 4HFBA 5AFJA 3UQ7A 2XQ3A 3UU8A 2XQ9A 2BYSA 3SH1A 2YKSA 3WTMA 2UZ6A 2WZYA 3LSVA 3T4MA 1UV6A 4IL9A 4AFTA 3GUAA 3TLUA 5CFBA 4QAAA 5HEHA 4TNVA 2XQ4A 4BQTA 3C79A 2ZJVA 3ZDHA 4QACA 2BYNA 4XK9A 4Z91A 3C84A 3RIAA 2WN9A 3ZDGA 2X00A 3UU4A 4IREA 4ZRUA 4LMLA 2BJ0A 3PEOA 4HFCA 5JMEA 2YOEA 4TNWA 5LXBA 3TLWA 3WTJA 5AFMA 2Y56A 4ILCA 2W8GA 3P4WA 2YN6A 5BP0A 2BYQA 4LMKA 5AFMB 4Z90A 3UUBA 2PGZA 3EAMA 2BG9A 2XQ5A 1I9BA 3TLSA 4QH1A 5HEGA 3TLTA 5IUXA 2QC1B 3RQWA 2Y57A 2X00D 3P50A 3WIPA 4LMJA 2BYPA 2XZ6A 4A97A 2W8FA 4HFIA 4ILAA 5KE4A 2XYSA 2XNTA 4TWHA 3IGQA 4A98A 5L47A 2XNUA 3SIOA 4ZJSA 1UX2A 5CO5A 2XZ5A 3SQ9A 4XHEA
chains in the Genus database with same CATH superfamily
4HFEA 4UM3P 2Y54A 3TLVA 3WTOA 3JADA 2YMDA 2Y7YA 4UM1A 4FRRA 2BYRA 4DBMA 4COFA 4ZK1A 5HEUA 5J0ZA 5J5FA 3WTLA 4ZJTA 3RI5A 2BR7A 3U8NA 5HCJA 3U8JA 2BG9B 5TVCA 3RHWA 4EZ1A 3EI0A 4HFHA 4ALXA 5AFKA 5FJVA 4TWDA 3UQ4A 5AFNA 2C9TA 5HEJA 2BG9C 4BFQA 2BG9E 3UU3A 2XQ6A 5AINA 2WNLA 4UY2A 4B5DA 5BW2A 3U8MA 2XQ8A 4UM3A 4QABA 4UXUA 5J5GA 3PMZA 4PIRA 5HEOA 3WTHA 3ZKRA 3WTNA 4F8HA 2VL0A 4WV9A 4NPPA 3JAFA 5L4EA 1UW6A 4UM3S 4IL4A 4D01A 4ZK4A 3WTIA 2WNJA 4ZR6A 5AFHA 3EHZA 3UU6A 5LG3A 5L4HA 4ILBA 2XNVA 4AFHA 2BR8A 2XYTA 5J5IA 3JAEA 4TWFA 2XQAA 4AFGA 4ZZCA 3SQ6A 5J5HA 2XQ7A 2WNCA 4X5TA 2ZJUA 3U8KA 2PH9A 2YMEA 3UU5A 3RQUA 5BRXA 5SYOA 4QH4A 3WTKA 5AFLA 3RIFA 4ZZBA 5HCMA 2Y58A 4NZBA 3U8LA 5KZUA 4HFDA 4HQPA 4QH5A 4HFBA 5AFJA 3UQ7A 2XQ3A 3UU8A 2XQ9A 2BYSA 3SH1A 2YKSA 3WTMA 2UZ6A 2WZYA 3LSVA 3T4MA 1UV6A 4IL9A 4AFTA 3GUAA 3TLUA 5CFBA 4QAAA 5HEHA 4TNVA 2XQ4A 4BQTA 3C79A 2ZJVA 3ZDHA 4QACA 2BYNA 4XK9A 4Z91A 3C84A 3RIAA 2WN9A 3ZDGA 2X00A 3UU4A 4IREA 4ZRUA 4LMLA 2BJ0A 3PEOA 4HFCA 5JMEA 2YOEA 4TNWA 5LXBA 3TLWA 3WTJA 5AFMA 2Y56A 4ILCA 2W8GA 3P4WA 2YN6A 5BP0A 2BYQA 4LMKA 5AFMB 4Z90A 3UUBA 2PGZA 3EAMA 2BG9A 2XQ5A 1I9BA 3TLSA 4QH1A 5HEGA 3TLTA 5IUXA 2QC1B 3RQWA 2Y57A 2X00D 3P50A 3WIPA 4LMJA 2BYPA 2XZ6A 4A97A 2W8FA 4HFIA 4ILAA 5KE4A 2XYSA 2XNTA 4TWHA 3IGQA 4A98A 5L47A 2XNUA 3SIOA 4ZJSA 1UX2A 5CO5A 2XZ5A 3SQ9A 4XHEA
chains in the Genus database with same CATH topology
4HFEA 4UM3P 2Y54A 3TLVA 3WTOA 3JADA 2YMDA 2Y7YA 4UM1A 4FRRA 2BYRA 4DBMA 4COFA 4ZK1A 5HEUA 5J0ZA 5J5FA 3WTLA 4ZJTA 3RI5A 2BR7A 3U8NA 5HCJA 3U8JA 2BG9B 5TVCA 3RHWA 4EZ1A 3EI0A 4HFHA 4ALXA 5AFKA 5FJVA 4TWDA 3UQ4A 5AFNA 2C9TA 5HEJA 2BG9C 4BFQA 2BG9E 3UU3A 2XQ6A 5AINA 2WNLA 4UY2A 4B5DA 5BW2A 3U8MA 2XQ8A 4UM3A 4QABA 4UXUA 5J5GA 3PMZA 4PIRA 5HEOA 3WTHA 3ZKRA 3WTNA 4F8HA 2VL0A 4WV9A 4NPPA 3JAFA 5L4EA 1UW6A 4UM3S 4IL4A 4D01A 4ZK4A 3WTIA 2WNJA 4ZR6A 5AFHA 3EHZA 3UU6A 5LG3A 5L4HA 4ILBA 2XNVA 4AFHA 2BR8A 2XYTA 5J5IA 3JAEA 4TWFA 2XQAA 4AFGA 4ZZCA 3SQ6A 5J5HA 2XQ7A 2WNCA 4X5TA 2ZJUA 3U8KA 2PH9A 2YMEA 3UU5A 3RQUA 5BRXA 5SYOA 4QH4A 3WTKA 5AFLA 3RIFA 4ZZBA 5HCMA 2Y58A 4NZBA 3U8LA 5KZUA 4HFDA 4HQPA 4QH5A 4HFBA 5AFJA 3UQ7A 2XQ3A 3UU8A 2XQ9A 2BYSA 3SH1A 2YKSA 3WTMA 2UZ6A 2WZYA 3LSVA 3T4MA 1UV6A 4IL9A 4AFTA 3GUAA 3TLUA 5CFBA 4QAAA 5HEHA 4TNVA 2XQ4A 4BQTA 3C79A 2ZJVA 3ZDHA 4QACA 2BYNA 4XK9A 4Z91A 3C84A 3RIAA 2WN9A 3ZDGA 2X00A 3UU4A 4IREA 4ZRUA 4LMLA 2BJ0A 3PEOA 4HFCA 5JMEA 2YOEA 4TNWA 5LXBA 3TLWA 3WTJA 5AFMA 2Y56A 4ILCA 2W8GA 3P4WA 2YN6A 5BP0A 2BYQA 4LMKA 5AFMB 4Z90A 3UUBA 2PGZA 3EAMA 2BG9A 2XQ5A 1I9BA 3TLSA 4QH1A 5HEGA 3TLTA 5IUXA 2QC1B 3RQWA 2Y57A 2X00D 3P50A 3WIPA 4LMJA 2BYPA 2XZ6A 4A97A 2W8FA 4HFIA 4ILAA 5KE4A 2XYSA 2XNTA 4TWHA 3IGQA 4A98A 5L47A 2XNUA 3SIOA 4ZJSA 1UX2A 5CO5A 2XZ5A 3SQ9A 4XHEA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4HFE A;  4UM3 P;  2Y54 A;  3TLV A;  3WTO A;  3JAD A;  2YMD A;  2Y7Y A;  4UM1 A;  4FRR A;  2BYR A;  4DBM A;  4COF A;  4ZK1 A;  5HEU A;  5J0Z A;  5J5F A;  3WTL A;  4ZJT A;  3RI5 A;  2BR7 A;  3U8N A;  5HCJ A;  3U8J A;  2BG9 B;  5TVC A;  3RHW A;  4EZ1 A;  3EI0 A;  4HFH A;  4ALX A;  5AFK A;  5FJV A;  4TWD A;  3UQ4 A;  5AFN A;  2C9T A;  5HEJ A;  2BG9 C;  4BFQ A;  2BG9 E;  3UU3 A;  2XQ6 A;  5AIN A;  2WNL A;  4UY2 A;  4B5D A;  5BW2 A;  3U8M A;  2XQ8 A;  4UM3 A;  4QAB A;  4UXU A;  5J5G A;  3PMZ A;  4PIR A;  5HEO A;  3WTH A;  3ZKR A;  3WTN A;  4F8H A;  2VL0 A;  4WV9 A;  4NPP A;  3JAF A;  5L4E A;  1UW6 A;  4UM3 S;  4IL4 A;  4D01 A;  4ZK4 A;  3WTI A;  2WNJ A;  4ZR6 A;  5AFH A;  3EHZ A;  3UU6 A;  5LG3 A;  5L4H A;  4ILB A;  2XNV A;  4AFH A;  2BR8 A;  2XYT A;  5J5I A;  3JAE A;  4TWF A;  2XQA A;  4AFG A;  4ZZC A;  3SQ6 A;  5J5H A;  2XQ7 A;  2WNC A;  4X5T A;  2ZJU A;  3U8K A;  2PH9 A;  2YME A;  3UU5 A;  3RQU A;  5BRX A;  5SYO A;  4QH4 A;  3WTK A;  5AFL A;  3RIF A;  4ZZB A;  5HCM A;  2Y58 A;  4NZB A;  3U8L A;  5KZU A;  4HFD A;  4HQP A;  4QH5 A;  4HFB A;  5AFJ A;  3UQ7 A;  2XQ3 A;  3UU8 A;  2XQ9 A;  2BYS A;  3SH1 A;  2YKS A;  3WTM A;  2UZ6 A;  2WZY A;  3LSV A;  3T4M A;  1UV6 A;  4IL9 A;  4AFT A;  3GUA A;  3TLU A;  5CFB A;  4QAA A;  5HEH A;  4TNV A;  2XQ4 A;  4BQT A;  3C79 A;  2ZJV A;  3ZDH A;  4QAC A;  2BYN A;  4XK9 A;  4Z91 A;  3C84 A;  3RIA A;  2WN9 A;  3ZDG A;  2X00 A;  3UU4 A;  4IRE A;  4ZRU A;  4LML A;  2BJ0 A;  3PEO A;  4HFC A;  5JME A;  2YOE A;  4TNW A;  5LXB A;  3TLW A;  3WTJ A;  5AFM A;  2Y56 A;  4ILC A;  2W8G A;  3P4W A;  2YN6 A;  5BP0 A;  2BYQ A;  4LMK A;  5AFM B;  4Z90 A;  3UUB A;  2PGZ A;  3EAM A;  2BG9 A;  2XQ5 A;  1I9B A;  3TLS A;  4QH1 A;  5HEG A;  3TLT A;  5IUX A;  2QC1 B;  3RQW A;  2Y57 A;  2X00 D;  3P50 A;  3WIP A;  4LMJ A;  2BYP A;  2XZ6 A;  4A97 A;  2W8F A;  4HFI A;  4ILA A;  5KE4 A;  2XYS A;  2XNT A;  4TWH A;  3IGQ A;  4A98 A;  5L47 A;  2XNU A;  3SIO A;  4ZJS A;  1UX2 A;  5CO5 A;  2XZ5 A;  3SQ9 A;  4XHE A; 
#chains in the Genus database with same CATH topology
 4HFE A;  4UM3 P;  2Y54 A;  3TLV A;  3WTO A;  3JAD A;  2YMD A;  2Y7Y A;  4UM1 A;  4FRR A;  2BYR A;  4DBM A;  4COF A;  4ZK1 A;  5HEU A;  5J0Z A;  5J5F A;  3WTL A;  4ZJT A;  3RI5 A;  2BR7 A;  3U8N A;  5HCJ A;  3U8J A;  2BG9 B;  5TVC A;  3RHW A;  4EZ1 A;  3EI0 A;  4HFH A;  4ALX A;  5AFK A;  5FJV A;  4TWD A;  3UQ4 A;  5AFN A;  2C9T A;  5HEJ A;  2BG9 C;  4BFQ A;  2BG9 E;  3UU3 A;  2XQ6 A;  5AIN A;  2WNL A;  4UY2 A;  4B5D A;  5BW2 A;  3U8M A;  2XQ8 A;  4UM3 A;  4QAB A;  4UXU A;  5J5G A;  3PMZ A;  4PIR A;  5HEO A;  3WTH A;  3ZKR A;  3WTN A;  4F8H A;  2VL0 A;  4WV9 A;  4NPP A;  3JAF A;  5L4E A;  1UW6 A;  4UM3 S;  4IL4 A;  4D01 A;  4ZK4 A;  3WTI A;  2WNJ A;  4ZR6 A;  5AFH A;  3EHZ A;  3UU6 A;  5LG3 A;  5L4H A;  4ILB A;  2XNV A;  4AFH A;  2BR8 A;  2XYT A;  5J5I A;  3JAE A;  4TWF A;  2XQA A;  4AFG A;  4ZZC A;  3SQ6 A;  5J5H A;  2XQ7 A;  2WNC A;  4X5T A;  2ZJU A;  3U8K A;  2PH9 A;  2YME A;  3UU5 A;  3RQU A;  5BRX A;  5SYO A;  4QH4 A;  3WTK A;  5AFL A;  3RIF A;  4ZZB A;  5HCM A;  2Y58 A;  4NZB A;  3U8L A;  5KZU A;  4HFD A;  4HQP A;  4QH5 A;  4HFB A;  5AFJ A;  3UQ7 A;  2XQ3 A;  3UU8 A;  2XQ9 A;  2BYS A;  3SH1 A;  2YKS A;  3WTM A;  2UZ6 A;  2WZY A;  3LSV A;  3T4M A;  1UV6 A;  4IL9 A;  4AFT A;  3GUA A;  3TLU A;  5CFB A;  4QAA A;  5HEH A;  4TNV A;  2XQ4 A;  4BQT A;  3C79 A;  2ZJV A;  3ZDH A;  4QAC A;  2BYN A;  4XK9 A;  4Z91 A;  3C84 A;  3RIA A;  2WN9 A;  3ZDG A;  2X00 A;  3UU4 A;  4IRE A;  4ZRU A;  4LML A;  2BJ0 A;  3PEO A;  4HFC A;  5JME A;  2YOE A;  4TNW A;  5LXB A;  3TLW A;  3WTJ A;  5AFM A;  2Y56 A;  4ILC A;  2W8G A;  3P4W A;  2YN6 A;  5BP0 A;  2BYQ A;  4LMK A;  5AFM B;  4Z90 A;  3UUB A;  2PGZ A;  3EAM A;  2BG9 A;  2XQ5 A;  1I9B A;  3TLS A;  4QH1 A;  5HEG A;  3TLT A;  5IUX A;  2QC1 B;  3RQW A;  2Y57 A;  2X00 D;  3P50 A;  3WIP A;  4LMJ A;  2BYP A;  2XZ6 A;  4A97 A;  2W8F A;  4HFI A;  4ILA A;  5KE4 A;  2XYS A;  2XNT A;  4TWH A;  3IGQ A;  4A98 A;  5L47 A;  2XNU A;  3SIO A;  4ZJS A;  1UX2 A;  5CO5 A;  2XZ5 A;  3SQ9 A;  4XHE A; 
#chains in the Genus database with same CATH homology
 4HFE A;  4UM3 P;  2Y54 A;  3TLV A;  3WTO A;  3JAD A;  2YMD A;  2Y7Y A;  4UM1 A;  4FRR A;  2BYR A;  4DBM A;  4COF A;  4ZK1 A;  5HEU A;  5J0Z A;  5J5F A;  3WTL A;  4ZJT A;  3RI5 A;  2BR7 A;  3U8N A;  5HCJ A;  3U8J A;  2BG9 B;  5TVC A;  3RHW A;  4EZ1 A;  3EI0 A;  4HFH A;  4ALX A;  5AFK A;  5FJV A;  4TWD A;  3UQ4 A;  5AFN A;  2C9T A;  5HEJ A;  2BG9 C;  4BFQ A;  2BG9 E;  3UU3 A;  2XQ6 A;  5AIN A;  2WNL A;  4UY2 A;  4B5D A;  5BW2 A;  3U8M A;  2XQ8 A;  4UM3 A;  4QAB A;  4UXU A;  5J5G A;  3PMZ A;  4PIR A;  5HEO A;  3WTH A;  3ZKR A;  3WTN A;  4F8H A;  2VL0 A;  4WV9 A;  4NPP A;  3JAF A;  5L4E A;  1UW6 A;  4UM3 S;  4IL4 A;  4D01 A;  4ZK4 A;  3WTI A;  2WNJ A;  4ZR6 A;  5AFH A;  3EHZ A;  3UU6 A;  5LG3 A;  5L4H A;  4ILB A;  2XNV A;  4AFH A;  2BR8 A;  2XYT A;  5J5I A;  3JAE A;  4TWF A;  2XQA A;  4AFG A;  4ZZC A;  3SQ6 A;  5J5H A;  2XQ7 A;  2WNC A;  4X5T A;  2ZJU A;  3U8K A;  2PH9 A;  2YME A;  3UU5 A;  3RQU A;  5BRX A;  5SYO A;  4QH4 A;  3WTK A;  5AFL A;  3RIF A;  4ZZB A;  5HCM A;  2Y58 A;  4NZB A;  3U8L A;  5KZU A;  4HFD A;  4HQP A;  4QH5 A;  4HFB A;  5AFJ A;  3UQ7 A;  2XQ3 A;  3UU8 A;  2XQ9 A;  2BYS A;  3SH1 A;  2YKS A;  3WTM A;  2UZ6 A;  2WZY A;  3LSV A;  3T4M A;  1UV6 A;  4IL9 A;  4AFT A;  3GUA A;  3TLU A;  5CFB A;  4QAA A;  5HEH A;  4TNV A;  2XQ4 A;  4BQT A;  3C79 A;  2ZJV A;  3ZDH A;  4QAC A;  2BYN A;  4XK9 A;  4Z91 A;  3C84 A;  3RIA A;  2WN9 A;  3ZDG A;  2X00 A;  3UU4 A;  4IRE A;  4ZRU A;  4LML A;  2BJ0 A;  3PEO A;  4HFC A;  5JME A;  2YOE A;  4TNW A;  5LXB A;  3TLW A;  3WTJ A;  5AFM A;  2Y56 A;  4ILC A;  2W8G A;  3P4W A;  2YN6 A;  5BP0 A;  2BYQ A;  4LMK A;  5AFM B;  4Z90 A;  3UUB A;  2PGZ A;  3EAM A;  2BG9 A;  2XQ5 A;  1I9B A;  3TLS A;  4QH1 A;  5HEG A;  3TLT A;  5IUX A;  2QC1 B;  3RQW A;  2Y57 A;  2X00 D;  3P50 A;  3WIP A;  4LMJ A;  2BYP A;  2XZ6 A;  4A97 A;  2W8F A;  4HFI A;  4ILA A;  5KE4 A;  2XYS A;  2XNT A;  4TWH A;  3IGQ A;  4A98 A;  5L47 A;  2XNU A;  3SIO A;  4ZJS A;  1UX2 A;  5CO5 A;  2XZ5 A;  3SQ9 A;  4XHE A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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