4UM1A

Engineered ls-achbp with alpha4-alpha4 binding pocket in complex with ns3573
Total Genus 42
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
42
sequence length
204
structure length
200
Chain Sequence
b'LDRADILYNIRQTSRPDVIPTQRDRPVAVSVSLKFINILEVNEITNEVDVVFWQQTTWSDRTLAWNSSHSPDQVSVPISSLWVPDLAAYNAISKPEVLTPQLAHVVSDGEVQYTPSIRQRFSCDVSGVDTESGATCRIKIGSWTHHSREISVDPTTDSEYFSQYSRFEILDVTQKKNSVTYSCCPEAYEDVEVSLNFRKK'
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Achbp Engineered to Mimic the Alpha4-Alpha4 Binding Pocket in Alpha4Beta2 Nicotinic Acetylcholine Receptors Reveals Interface Specific Interactions Important for Binding and Activity
pubmed doi rcsb
molecule keywords ACETYLCHOLINE-BINDING PROTEIN
source organism Lymnaea stagnalis
molecule tags Signaling protein
total genus 42
structure length 200
sequence length 204
chains with identical sequence B, C, D, E
ec nomenclature
pdb deposition date 2014-05-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02931 Neur_chan_LBD Neurotransmitter-gated ion-channel ligand binding domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.70.170.10 Mainly Beta Distorted Sandwich Acetylcholine Binding Protein; Chain: A, Neurotransmitter-gated ion-channel ligand-binding domain 4um1A00
4QH1A 2XQ6A 3C84A 4HQPA 4QAAA 4LMJA 5HEJA 3JAFA 3WTKA 4WV9A 4B5DA 4TNVA 2BYPA 2X00A 4TWFA 5KE4A 2XZ6A 2XYSA 2YMDA 3UU5A 4AFGA 4IL4A 4DBMA 4IREA 4UM3P 4HFCA 3TLVA 3UU6A 3TLTA 2Y56A 5AFMA 2XQ3A 3C79A 4HFIA 2BR8A 2YKSA 3RIAA 2BYNA 4BQTA 2C9TA 2Y57A 4ZR6A 2XQ4A 2YOEA 3UUBA 4ZRUA 2YN6A 2W8FA 2BR7A 2XQAA 2YMEA 3UU4A 4HFHA 4PIRA 3RQUA 4LMKA 5L4EA 1UX2A 3WTLA 4UM3A 3WTHA 5J5HA 3SIOA 4COFA 5L4HA 2XQ9A 4AFTA 3SQ6A 4EZ1A 4XHEA 2BG9C 3ZDGA 2VL0A 3TLUA 5AFHA 3EAMA 4ZK4A 2BG9A 5CFBA 4XK9A 3SQ9A 4A98A 4UM1A 2XYTA 4ILCA 4QABA 3PEOA 5FJVA 5BP0A 5J5IA 5HEHA 2BYQA 2BJ0A 3UU3A 3ZDHA 5LG3A 2PGZA 3WIPA 2Y58A 2UZ6A 2XNTA 2ZJVA 2BG9B 2BYRA 2XQ5A 3RI5A 3JAEA 3WTMA 1UV6A 2WN9A 5JMEA 3TLWA 2BG9E 3UQ4A 3GUAA 3WTIA 2WNLA 2BYSA 2X00D 2XNUA 4HFBA 3PMZA 4D01A 4ZJSA 5HCJA 3U8MA 3U8NA 5AFNA 5HEUA 4QH5A 4TNWA 2Y54A 2XZ5A 4UXUA 2Y7YA 5AFKA 1UW6A 4AFHA 5L47A 3SH1A 4QH4A 5TVCA 3WTNA 3WTOA 2PH9A 4TWHA 3LSVA 5AFJA 3IGQA 5BRXA 5J5GA 3EI0A 4ZZBA 4BFQA 3T4MA 5AFLA 2WZYA 3U8JA 4UY2A 3RIFA 2QC1B 4UM3S 4F8HA 2WNJA 4HFDA 4FRRA 2ZJUA 3TLSA 3P4WA 5HCMA 3P50A 3U8KA 4X5TA 5BW2A 2XQ8A 2W8GA 3RHWA 2WNCA 4HFEA 3WTJA 4ILAA 5SYOA 5HEGA 4A97A 3RQWA 3JADA 3UQ7A 4ILBA 4IL9A 4LMLA 3UU8A 5IUXA 5CO5A 3U8LA 5KZUA 4NZBA 5J5FA 4TWDA 4ZK1A 4ZZCA 5J0ZA 2XNVA 3ZKRA 4ZJTA 3EHZA 4NPPA 5LXBA 4QACA 4Z91A 4Z90A 4ALXA 5AINA 1I9BA 5AFMB 2XQ7A 5HEOA
chains in the Genus database with same CATH superfamily
4QH1A 2XQ6A 3C84A 4HQPA 4QAAA 4LMJA 5HEJA 3JAFA 3WTKA 4WV9A 4B5DA 4TNVA 2BYPA 2X00A 4TWFA 5KE4A 2XZ6A 2XYSA 2YMDA 3UU5A 4AFGA 4IL4A 4DBMA 4IREA 4UM3P 4HFCA 3TLVA 3UU6A 3TLTA 2Y56A 5AFMA 2XQ3A 3C79A 4HFIA 2BR8A 2YKSA 3RIAA 2BYNA 4BQTA 2C9TA 2Y57A 4ZR6A 2XQ4A 2YOEA 3UUBA 4ZRUA 2YN6A 2W8FA 2BR7A 2XQAA 2YMEA 3UU4A 4HFHA 4PIRA 3RQUA 4LMKA 5L4EA 1UX2A 3WTLA 4UM3A 3WTHA 5J5HA 3SIOA 4COFA 5L4HA 2XQ9A 4AFTA 3SQ6A 4EZ1A 4XHEA 2BG9C 3ZDGA 2VL0A 3TLUA 5AFHA 3EAMA 4ZK4A 2BG9A 5CFBA 4XK9A 3SQ9A 4A98A 4UM1A 2XYTA 4ILCA 4QABA 3PEOA 5FJVA 5BP0A 5J5IA 5HEHA 2BYQA 2BJ0A 3UU3A 3ZDHA 5LG3A 2PGZA 3WIPA 2Y58A 2UZ6A 2XNTA 2ZJVA 2BG9B 2BYRA 2XQ5A 3RI5A 3JAEA 3WTMA 1UV6A 2WN9A 5JMEA 3TLWA 2BG9E 3UQ4A 3GUAA 3WTIA 2WNLA 2BYSA 2X00D 2XNUA 4HFBA 3PMZA 4D01A 4ZJSA 5HCJA 3U8MA 3U8NA 5AFNA 5HEUA 4QH5A 4TNWA 2Y54A 2XZ5A 4UXUA 2Y7YA 5AFKA 1UW6A 4AFHA 5L47A 3SH1A 4QH4A 5TVCA 3WTNA 3WTOA 2PH9A 4TWHA 3LSVA 5AFJA 3IGQA 5BRXA 5J5GA 3EI0A 4ZZBA 4BFQA 3T4MA 5AFLA 2WZYA 3U8JA 4UY2A 3RIFA 2QC1B 4UM3S 4F8HA 2WNJA 4HFDA 4FRRA 2ZJUA 3TLSA 3P4WA 5HCMA 3P50A 3U8KA 4X5TA 5BW2A 2XQ8A 2W8GA 3RHWA 2WNCA 4HFEA 3WTJA 4ILAA 5SYOA 5HEGA 4A97A 3RQWA 3JADA 3UQ7A 4ILBA 4IL9A 4LMLA 3UU8A 5IUXA 5CO5A 3U8LA 5KZUA 4NZBA 5J5FA 4TWDA 4ZK1A 4ZZCA 5J0ZA 2XNVA 3ZKRA 4ZJTA 3EHZA 4NPPA 5LXBA 4QACA 4Z91A 4Z90A 4ALXA 5AINA 1I9BA 5AFMB 2XQ7A 5HEOA
chains in the Genus database with same CATH topology
4QH1A 2XQ6A 3C84A 4HQPA 4QAAA 4LMJA 5HEJA 3JAFA 3WTKA 4WV9A 4B5DA 4TNVA 2BYPA 2X00A 4TWFA 5KE4A 2XZ6A 2XYSA 2YMDA 3UU5A 4AFGA 4IL4A 4DBMA 4IREA 4UM3P 4HFCA 3TLVA 3UU6A 3TLTA 2Y56A 5AFMA 2XQ3A 3C79A 4HFIA 2BR8A 2YKSA 3RIAA 2BYNA 4BQTA 2C9TA 2Y57A 4ZR6A 2XQ4A 2YOEA 3UUBA 4ZRUA 2YN6A 2W8FA 2BR7A 2XQAA 2YMEA 3UU4A 4HFHA 4PIRA 3RQUA 4LMKA 5L4EA 1UX2A 3WTLA 4UM3A 3WTHA 5J5HA 3SIOA 4COFA 5L4HA 2XQ9A 4AFTA 3SQ6A 4EZ1A 4XHEA 2BG9C 3ZDGA 2VL0A 3TLUA 5AFHA 3EAMA 4ZK4A 2BG9A 5CFBA 4XK9A 3SQ9A 4A98A 4UM1A 2XYTA 4ILCA 4QABA 3PEOA 5FJVA 5BP0A 5J5IA 5HEHA 2BYQA 2BJ0A 3UU3A 3ZDHA 5LG3A 2PGZA 3WIPA 2Y58A 2UZ6A 2XNTA 2ZJVA 2BG9B 2BYRA 2XQ5A 3RI5A 3JAEA 3WTMA 1UV6A 2WN9A 5JMEA 3TLWA 2BG9E 3UQ4A 3GUAA 3WTIA 2WNLA 2BYSA 2X00D 2XNUA 4HFBA 3PMZA 4D01A 4ZJSA 5HCJA 3U8MA 3U8NA 5AFNA 5HEUA 4QH5A 4TNWA 2Y54A 2XZ5A 4UXUA 2Y7YA 5AFKA 1UW6A 4AFHA 5L47A 3SH1A 4QH4A 5TVCA 3WTNA 3WTOA 2PH9A 4TWHA 3LSVA 5AFJA 3IGQA 5BRXA 5J5GA 3EI0A 4ZZBA 4BFQA 3T4MA 5AFLA 2WZYA 3U8JA 4UY2A 3RIFA 2QC1B 4UM3S 4F8HA 2WNJA 4HFDA 4FRRA 2ZJUA 3TLSA 3P4WA 5HCMA 3P50A 3U8KA 4X5TA 5BW2A 2XQ8A 2W8GA 3RHWA 2WNCA 4HFEA 3WTJA 4ILAA 5SYOA 5HEGA 4A97A 3RQWA 3JADA 3UQ7A 4ILBA 4IL9A 4LMLA 3UU8A 5IUXA 5CO5A 3U8LA 5KZUA 4NZBA 5J5FA 4TWDA 4ZK1A 4ZZCA 5J0ZA 2XNVA 3ZKRA 4ZJTA 3EHZA 4NPPA 5LXBA 4QACA 4Z91A 4Z90A 4ALXA 5AINA 1I9BA 5AFMB 2XQ7A 5HEOA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4QH1 A;  2XQ6 A;  3C84 A;  4HQP A;  4QAA A;  4LMJ A;  5HEJ A;  3JAF A;  3WTK A;  4WV9 A;  4B5D A;  4TNV A;  2BYP A;  2X00 A;  4TWF A;  5KE4 A;  2XZ6 A;  2XYS A;  2YMD A;  3UU5 A;  4AFG A;  4IL4 A;  4DBM A;  4IRE A;  4UM3 P;  4HFC A;  3TLV A;  3UU6 A;  3TLT A;  2Y56 A;  5AFM A;  2XQ3 A;  3C79 A;  4HFI A;  2BR8 A;  2YKS A;  3RIA A;  2BYN A;  4BQT A;  2C9T A;  2Y57 A;  4ZR6 A;  2XQ4 A;  2YOE A;  3UUB A;  4ZRU A;  2YN6 A;  2W8F A;  2BR7 A;  2XQA A;  2YME A;  3UU4 A;  4HFH A;  4PIR A;  3RQU A;  4LMK A;  5L4E A;  1UX2 A;  3WTL A;  4UM3 A;  3WTH A;  5J5H A;  3SIO A;  4COF A;  5L4H A;  2XQ9 A;  4AFT A;  3SQ6 A;  4EZ1 A;  4XHE A;  2BG9 C;  3ZDG A;  2VL0 A;  3TLU A;  5AFH A;  3EAM A;  4ZK4 A;  2BG9 A;  5CFB A;  4XK9 A;  3SQ9 A;  4A98 A;  4UM1 A;  2XYT A;  4ILC A;  4QAB A;  3PEO A;  5FJV A;  5BP0 A;  5J5I A;  5HEH A;  2BYQ A;  2BJ0 A;  3UU3 A;  3ZDH A;  5LG3 A;  2PGZ A;  3WIP A;  2Y58 A;  2UZ6 A;  2XNT A;  2ZJV A;  2BG9 B;  2BYR A;  2XQ5 A;  3RI5 A;  3JAE A;  3WTM A;  1UV6 A;  2WN9 A;  5JME A;  3TLW A;  2BG9 E;  3UQ4 A;  3GUA A;  3WTI A;  2WNL A;  2BYS A;  2X00 D;  2XNU A;  4HFB A;  3PMZ A;  4D01 A;  4ZJS A;  5HCJ A;  3U8M A;  3U8N A;  5AFN A;  5HEU A;  4QH5 A;  4TNW A;  2Y54 A;  2XZ5 A;  4UXU A;  2Y7Y A;  5AFK A;  1UW6 A;  4AFH A;  5L47 A;  3SH1 A;  4QH4 A;  5TVC A;  3WTN A;  3WTO A;  2PH9 A;  4TWH A;  3LSV A;  5AFJ A;  3IGQ A;  5BRX A;  5J5G A;  3EI0 A;  4ZZB A;  4BFQ A;  3T4M A;  5AFL A;  2WZY A;  3U8J A;  4UY2 A;  3RIF A;  2QC1 B;  4UM3 S;  4F8H A;  2WNJ A;  4HFD A;  4FRR A;  2ZJU A;  3TLS A;  3P4W A;  5HCM A;  3P50 A;  3U8K A;  4X5T A;  5BW2 A;  2XQ8 A;  2W8G A;  3RHW A;  2WNC A;  4HFE A;  3WTJ A;  4ILA A;  5SYO A;  5HEG A;  4A97 A;  3RQW A;  3JAD A;  3UQ7 A;  4ILB A;  4IL9 A;  4LML A;  3UU8 A;  5IUX A;  5CO5 A;  3U8L A;  5KZU A;  4NZB A;  5J5F A;  4TWD A;  4ZK1 A;  4ZZC A;  5J0Z A;  2XNV A;  3ZKR A;  4ZJT A;  3EHZ A;  4NPP A;  5LXB A;  4QAC A;  4Z91 A;  4Z90 A;  4ALX A;  5AIN A;  1I9B A;  5AFM B;  2XQ7 A;  5HEO A; 
#chains in the Genus database with same CATH topology
 4QH1 A;  2XQ6 A;  3C84 A;  4HQP A;  4QAA A;  4LMJ A;  5HEJ A;  3JAF A;  3WTK A;  4WV9 A;  4B5D A;  4TNV A;  2BYP A;  2X00 A;  4TWF A;  5KE4 A;  2XZ6 A;  2XYS A;  2YMD A;  3UU5 A;  4AFG A;  4IL4 A;  4DBM A;  4IRE A;  4UM3 P;  4HFC A;  3TLV A;  3UU6 A;  3TLT A;  2Y56 A;  5AFM A;  2XQ3 A;  3C79 A;  4HFI A;  2BR8 A;  2YKS A;  3RIA A;  2BYN A;  4BQT A;  2C9T A;  2Y57 A;  4ZR6 A;  2XQ4 A;  2YOE A;  3UUB A;  4ZRU A;  2YN6 A;  2W8F A;  2BR7 A;  2XQA A;  2YME A;  3UU4 A;  4HFH A;  4PIR A;  3RQU A;  4LMK A;  5L4E A;  1UX2 A;  3WTL A;  4UM3 A;  3WTH A;  5J5H A;  3SIO A;  4COF A;  5L4H A;  2XQ9 A;  4AFT A;  3SQ6 A;  4EZ1 A;  4XHE A;  2BG9 C;  3ZDG A;  2VL0 A;  3TLU A;  5AFH A;  3EAM A;  4ZK4 A;  2BG9 A;  5CFB A;  4XK9 A;  3SQ9 A;  4A98 A;  4UM1 A;  2XYT A;  4ILC A;  4QAB A;  3PEO A;  5FJV A;  5BP0 A;  5J5I A;  5HEH A;  2BYQ A;  2BJ0 A;  3UU3 A;  3ZDH A;  5LG3 A;  2PGZ A;  3WIP A;  2Y58 A;  2UZ6 A;  2XNT A;  2ZJV A;  2BG9 B;  2BYR A;  2XQ5 A;  3RI5 A;  3JAE A;  3WTM A;  1UV6 A;  2WN9 A;  5JME A;  3TLW A;  2BG9 E;  3UQ4 A;  3GUA A;  3WTI A;  2WNL A;  2BYS A;  2X00 D;  2XNU A;  4HFB A;  3PMZ A;  4D01 A;  4ZJS A;  5HCJ A;  3U8M A;  3U8N A;  5AFN A;  5HEU A;  4QH5 A;  4TNW A;  2Y54 A;  2XZ5 A;  4UXU A;  2Y7Y A;  5AFK A;  1UW6 A;  4AFH A;  5L47 A;  3SH1 A;  4QH4 A;  5TVC A;  3WTN A;  3WTO A;  2PH9 A;  4TWH A;  3LSV A;  5AFJ A;  3IGQ A;  5BRX A;  5J5G A;  3EI0 A;  4ZZB A;  4BFQ A;  3T4M A;  5AFL A;  2WZY A;  3U8J A;  4UY2 A;  3RIF A;  2QC1 B;  4UM3 S;  4F8H A;  2WNJ A;  4HFD A;  4FRR A;  2ZJU A;  3TLS A;  3P4W A;  5HCM A;  3P50 A;  3U8K A;  4X5T A;  5BW2 A;  2XQ8 A;  2W8G A;  3RHW A;  2WNC A;  4HFE A;  3WTJ A;  4ILA A;  5SYO A;  5HEG A;  4A97 A;  3RQW A;  3JAD A;  3UQ7 A;  4ILB A;  4IL9 A;  4LML A;  3UU8 A;  5IUX A;  5CO5 A;  3U8L A;  5KZU A;  4NZB A;  5J5F A;  4TWD A;  4ZK1 A;  4ZZC A;  5J0Z A;  2XNV A;  3ZKR A;  4ZJT A;  3EHZ A;  4NPP A;  5LXB A;  4QAC A;  4Z91 A;  4Z90 A;  4ALX A;  5AIN A;  1I9B A;  5AFM B;  2XQ7 A;  5HEO A; 
#chains in the Genus database with same CATH homology
 4QH1 A;  2XQ6 A;  3C84 A;  4HQP A;  4QAA A;  4LMJ A;  5HEJ A;  3JAF A;  3WTK A;  4WV9 A;  4B5D A;  4TNV A;  2BYP A;  2X00 A;  4TWF A;  5KE4 A;  2XZ6 A;  2XYS A;  2YMD A;  3UU5 A;  4AFG A;  4IL4 A;  4DBM A;  4IRE A;  4UM3 P;  4HFC A;  3TLV A;  3UU6 A;  3TLT A;  2Y56 A;  5AFM A;  2XQ3 A;  3C79 A;  4HFI A;  2BR8 A;  2YKS A;  3RIA A;  2BYN A;  4BQT A;  2C9T A;  2Y57 A;  4ZR6 A;  2XQ4 A;  2YOE A;  3UUB A;  4ZRU A;  2YN6 A;  2W8F A;  2BR7 A;  2XQA A;  2YME A;  3UU4 A;  4HFH A;  4PIR A;  3RQU A;  4LMK A;  5L4E A;  1UX2 A;  3WTL A;  4UM3 A;  3WTH A;  5J5H A;  3SIO A;  4COF A;  5L4H A;  2XQ9 A;  4AFT A;  3SQ6 A;  4EZ1 A;  4XHE A;  2BG9 C;  3ZDG A;  2VL0 A;  3TLU A;  5AFH A;  3EAM A;  4ZK4 A;  2BG9 A;  5CFB A;  4XK9 A;  3SQ9 A;  4A98 A;  4UM1 A;  2XYT A;  4ILC A;  4QAB A;  3PEO A;  5FJV A;  5BP0 A;  5J5I A;  5HEH A;  2BYQ A;  2BJ0 A;  3UU3 A;  3ZDH A;  5LG3 A;  2PGZ A;  3WIP A;  2Y58 A;  2UZ6 A;  2XNT A;  2ZJV A;  2BG9 B;  2BYR A;  2XQ5 A;  3RI5 A;  3JAE A;  3WTM A;  1UV6 A;  2WN9 A;  5JME A;  3TLW A;  2BG9 E;  3UQ4 A;  3GUA A;  3WTI A;  2WNL A;  2BYS A;  2X00 D;  2XNU A;  4HFB A;  3PMZ A;  4D01 A;  4ZJS A;  5HCJ A;  3U8M A;  3U8N A;  5AFN A;  5HEU A;  4QH5 A;  4TNW A;  2Y54 A;  2XZ5 A;  4UXU A;  2Y7Y A;  5AFK A;  1UW6 A;  4AFH A;  5L47 A;  3SH1 A;  4QH4 A;  5TVC A;  3WTN A;  3WTO A;  2PH9 A;  4TWH A;  3LSV A;  5AFJ A;  3IGQ A;  5BRX A;  5J5G A;  3EI0 A;  4ZZB A;  4BFQ A;  3T4M A;  5AFL A;  2WZY A;  3U8J A;  4UY2 A;  3RIF A;  2QC1 B;  4UM3 S;  4F8H A;  2WNJ A;  4HFD A;  4FRR A;  2ZJU A;  3TLS A;  3P4W A;  5HCM A;  3P50 A;  3U8K A;  4X5T A;  5BW2 A;  2XQ8 A;  2W8G A;  3RHW A;  2WNC A;  4HFE A;  3WTJ A;  4ILA A;  5SYO A;  5HEG A;  4A97 A;  3RQW A;  3JAD A;  3UQ7 A;  4ILB A;  4IL9 A;  4LML A;  3UU8 A;  5IUX A;  5CO5 A;  3U8L A;  5KZU A;  4NZB A;  5J5F A;  4TWD A;  4ZK1 A;  4ZZC A;  5J0Z A;  2XNV A;  3ZKR A;  4ZJT A;  3EHZ A;  4NPP A;  5LXB A;  4QAC A;  4Z91 A;  4Z90 A;  4ALX A;  5AIN A;  1I9B A;  5AFM B;  2XQ7 A;  5HEO A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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