4UM1A

Engineered ls-achbp with alpha4-alpha4 binding pocket in complex with ns3573
Total Genus 42
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
42
sequence length
204
structure length
200
Chain Sequence
LDRADILYNIRQTSRPDVIPTQRDRPVAVSVSLKFINILEVNEITNEVDVVFWQQTTWSDRTLAWNSSHSPDQVSVPISSLWVPDLAAYNAISKPEVLTPQLAHVVSDGEVQYTPSIRQRFSCDVSGVDTESGATCRIKIGSWTHHSREISVDPTTDSEYFSQYSRFEILDVTQKKNSVTYSCCPEAYEDVEVSLNFRKK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Signaling protein
source organism Lymnaea stagnalis
publication title Achbp Engineered to Mimic the Alpha4-Alpha4 Binding Pocket in Alpha4Beta2 Nicotinic Acetylcholine Receptors Reveals Interface Specific Interactions Important for Binding and Activity
pubmed doi rcsb
molecule keywords ACETYLCHOLINE-BINDING PROTEIN
total genus 42
structure length 200
sequence length 204
chains with identical sequence B, C, D, E
ec nomenclature
pdb deposition date 2014-05-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02931 Neur_chan_LBD Neurotransmitter-gated ion-channel ligand binding domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.70.170.10 Mainly Beta Distorted Sandwich Acetylcholine Binding Protein; Chain: A, Neurotransmitter-gated ion-channel ligand-binding domain 4um1A00
3U8NA 4ILCA 5CO5A 4ZJTA 2QC1B 3T4MA 2XQAA 4X5TA 2XQ8A 5L47A 4LMJA 4B5DA 2XQ3A 4BFQA 4IL4A 3UUBA 5AINA 3RQWA 5J5GA 3UQ7A 4COFA 3LSVA 4ILAA 2W8FA 2WN9A 4HFIA 3RIAA 3WTKA 5L4EA 2BYQA 2XNUA 3WTLA 4WV9A 3GUAA 5FJVA 2W8GA 2XQ7A 4Z90A 2YMDA 5HCMA 5AFKA 2BR7A 2YMEA 4HFEA 3UU8A 3EI0A 4BQTA 1I9BA 4UM1A 5HEGA 3TLWA 2XQ6A 4QH4A 2X00A 3RIFA 4XHEA 3UQ4A 5KE4A 5L4HA 4LMLA 5AFHA 1UW6A 4HFHA 3UU5A 3U8JA 4HFCA 3C79A 2XNVA 2YOEA 3WTHA 3WTOA 5HCJA 3P50A 3EAMA 2BG9E 2XNTA 2XQ9A 3RI5A 5HEHA 2ZJUA 2WNCA 2XQ5A 3SH1A 2BG9A 5IUXA 3RQUA 4HFDA 2Y7YA 2PGZA 4QABA 2YKSA 2XZ6A 5KZUA 5BW2A 3TLTA 4ZK4A 4A97A 2BYNA 4ZK1A 4XK9A 4QH1A 4IL9A 5AFLA 4LMKA 3U8MA 2BYPA 3WTJA 2UZ6A 2YN6A 2BJ0A 4PIRA 2BG9B 3U8KA 5J5IA 4UM3P 1UV6A 5AFMB 2XYTA 5HEJA 2PH9A 4A98A 2BG9C 2XQ4A 2Y58A 4UM3S 2ZJVA 3P4WA 5HEOA 3RHWA 3JAFA 4DBMA 3ZKRA 5HEUA 5TVCA 4AFHA 3ZDGA 4UXUA 4AFTA 3C84A 4ZR6A 3UU4A 5AFMA 3PEOA 3WTNA 3TLUA 2Y56A 4TWDA 2XZ5A 3WTMA 4TNWA 4ZRUA 4ILBA 5J5HA 3ZDHA 4ALXA 3EHZA 1UX2A 4Z91A 4AFGA 2C9TA 4ZZCA 4QACA 2BYSA 2WNLA 2VL0A 5LG3A 4HQPA 3UU6A 2Y57A 4IREA 2BYRA 2X00D 4UM3A 2Y54A 3SQ9A 5LXBA 3IGQA 3WIPA 3WTIA 5BP0A 4NZBA 5BRXA 3JAEA 4TNVA 5AFNA 4D01A 4QH5A 3U8LA 2BR8A 4NPPA 3SIOA 2WZYA 2XYSA 5J5FA 4EZ1A 3PMZA 3TLVA 4FRRA 4UY2A 5CFBA 4F8HA 5SYOA 4ZJSA 4QAAA 2WNJA 5AFJA 3JADA 3UU3A 4ZZBA 5JMEA 3SQ6A 4TWFA 3TLSA 5J0ZA 4TWHA 4HFBA
chains in the Genus database with same CATH superfamily
3U8NA 4ILCA 5CO5A 4ZJTA 2QC1B 3T4MA 2XQAA 4X5TA 2XQ8A 5L47A 4LMJA 4B5DA 2XQ3A 4BFQA 4IL4A 3UUBA 5AINA 3RQWA 5J5GA 3UQ7A 4COFA 3LSVA 4ILAA 2W8FA 2WN9A 4HFIA 3RIAA 3WTKA 5L4EA 2BYQA 2XNUA 3WTLA 4WV9A 3GUAA 5FJVA 2W8GA 2XQ7A 4Z90A 2YMDA 5HCMA 5AFKA 2BR7A 2YMEA 4HFEA 3UU8A 3EI0A 4BQTA 1I9BA 4UM1A 5HEGA 3TLWA 2XQ6A 4QH4A 2X00A 3RIFA 4XHEA 3UQ4A 5KE4A 5L4HA 4LMLA 5AFHA 1UW6A 4HFHA 3UU5A 3U8JA 4HFCA 3C79A 2XNVA 2YOEA 3WTHA 3WTOA 5HCJA 3P50A 3EAMA 2BG9E 2XNTA 2XQ9A 3RI5A 5HEHA 2ZJUA 2WNCA 2XQ5A 3SH1A 2BG9A 5IUXA 3RQUA 4HFDA 2Y7YA 2PGZA 4QABA 2YKSA 2XZ6A 5KZUA 5BW2A 3TLTA 4ZK4A 4A97A 2BYNA 4ZK1A 4XK9A 4QH1A 4IL9A 5AFLA 4LMKA 3U8MA 2BYPA 3WTJA 2UZ6A 2YN6A 2BJ0A 4PIRA 2BG9B 3U8KA 5J5IA 4UM3P 1UV6A 5AFMB 2XYTA 5HEJA 2PH9A 4A98A 2BG9C 2XQ4A 2Y58A 4UM3S 2ZJVA 3P4WA 5HEOA 3RHWA 3JAFA 4DBMA 3ZKRA 5HEUA 5TVCA 4AFHA 3ZDGA 4UXUA 4AFTA 3C84A 4ZR6A 3UU4A 5AFMA 3PEOA 3WTNA 3TLUA 2Y56A 4TWDA 2XZ5A 3WTMA 4TNWA 4ZRUA 4ILBA 5J5HA 3ZDHA 4ALXA 3EHZA 1UX2A 4Z91A 4AFGA 2C9TA 4ZZCA 4QACA 2BYSA 2WNLA 2VL0A 5LG3A 4HQPA 3UU6A 2Y57A 4IREA 2BYRA 2X00D 4UM3A 2Y54A 3SQ9A 5LXBA 3IGQA 3WIPA 3WTIA 5BP0A 4NZBA 5BRXA 3JAEA 4TNVA 5AFNA 4D01A 4QH5A 3U8LA 2BR8A 4NPPA 3SIOA 2WZYA 2XYSA 5J5FA 4EZ1A 3PMZA 3TLVA 4FRRA 4UY2A 5CFBA 4F8HA 5SYOA 4ZJSA 4QAAA 2WNJA 5AFJA 3JADA 3UU3A 4ZZBA 5JMEA 3SQ6A 4TWFA 3TLSA 5J0ZA 4TWHA 4HFBA
chains in the Genus database with same CATH topology
3U8NA 4ILCA 5CO5A 4ZJTA 2QC1B 3T4MA 2XQAA 4X5TA 2XQ8A 5L47A 4LMJA 4B5DA 2XQ3A 4BFQA 4IL4A 3UUBA 5AINA 3RQWA 5J5GA 3UQ7A 4COFA 3LSVA 4ILAA 2W8FA 2WN9A 4HFIA 3RIAA 3WTKA 5L4EA 2BYQA 2XNUA 3WTLA 4WV9A 3GUAA 5FJVA 2W8GA 2XQ7A 4Z90A 2YMDA 5HCMA 5AFKA 2BR7A 2YMEA 4HFEA 3UU8A 3EI0A 4BQTA 1I9BA 4UM1A 5HEGA 3TLWA 2XQ6A 4QH4A 2X00A 3RIFA 4XHEA 3UQ4A 5KE4A 5L4HA 4LMLA 5AFHA 1UW6A 4HFHA 3UU5A 3U8JA 4HFCA 3C79A 2XNVA 2YOEA 3WTHA 3WTOA 5HCJA 3P50A 3EAMA 2BG9E 2XNTA 2XQ9A 3RI5A 5HEHA 2ZJUA 2WNCA 2XQ5A 3SH1A 2BG9A 5IUXA 3RQUA 4HFDA 2Y7YA 2PGZA 4QABA 2YKSA 2XZ6A 5KZUA 5BW2A 3TLTA 4ZK4A 4A97A 2BYNA 4ZK1A 4XK9A 4QH1A 4IL9A 5AFLA 4LMKA 3U8MA 2BYPA 3WTJA 2UZ6A 2YN6A 2BJ0A 4PIRA 2BG9B 3U8KA 5J5IA 4UM3P 1UV6A 5AFMB 2XYTA 5HEJA 2PH9A 4A98A 2BG9C 2XQ4A 2Y58A 4UM3S 2ZJVA 3P4WA 5HEOA 3RHWA 3JAFA 4DBMA 3ZKRA 5HEUA 5TVCA 4AFHA 3ZDGA 4UXUA 4AFTA 3C84A 4ZR6A 3UU4A 5AFMA 3PEOA 3WTNA 3TLUA 2Y56A 4TWDA 2XZ5A 3WTMA 4TNWA 4ZRUA 4ILBA 5J5HA 3ZDHA 4ALXA 3EHZA 1UX2A 4Z91A 4AFGA 2C9TA 4ZZCA 4QACA 2BYSA 2WNLA 2VL0A 5LG3A 4HQPA 3UU6A 2Y57A 4IREA 2BYRA 2X00D 4UM3A 2Y54A 3SQ9A 5LXBA 3IGQA 3WIPA 3WTIA 5BP0A 4NZBA 5BRXA 3JAEA 4TNVA 5AFNA 4D01A 4QH5A 3U8LA 2BR8A 4NPPA 3SIOA 2WZYA 2XYSA 5J5FA 4EZ1A 3PMZA 3TLVA 4FRRA 4UY2A 5CFBA 4F8HA 5SYOA 4ZJSA 4QAAA 2WNJA 5AFJA 3JADA 3UU3A 4ZZBA 5JMEA 3SQ6A 4TWFA 3TLSA 5J0ZA 4TWHA 4HFBA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3U8N A;  4ILC A;  5CO5 A;  4ZJT A;  2QC1 B;  3T4M A;  2XQA A;  4X5T A;  2XQ8 A;  5L47 A;  4LMJ A;  4B5D A;  2XQ3 A;  4BFQ A;  4IL4 A;  3UUB A;  5AIN A;  3RQW A;  5J5G A;  3UQ7 A;  4COF A;  3LSV A;  4ILA A;  2W8F A;  2WN9 A;  4HFI A;  3RIA A;  3WTK A;  5L4E A;  2BYQ A;  2XNU A;  3WTL A;  4WV9 A;  3GUA A;  5FJV A;  2W8G A;  2XQ7 A;  4Z90 A;  2YMD A;  5HCM A;  5AFK A;  2BR7 A;  2YME A;  4HFE A;  3UU8 A;  3EI0 A;  4BQT A;  1I9B A;  4UM1 A;  5HEG A;  3TLW A;  2XQ6 A;  4QH4 A;  2X00 A;  3RIF A;  4XHE A;  3UQ4 A;  5KE4 A;  5L4H A;  4LML A;  5AFH A;  1UW6 A;  4HFH A;  3UU5 A;  3U8J A;  4HFC A;  3C79 A;  2XNV A;  2YOE A;  3WTH A;  3WTO A;  5HCJ A;  3P50 A;  3EAM A;  2BG9 E;  2XNT A;  2XQ9 A;  3RI5 A;  5HEH A;  2ZJU A;  2WNC A;  2XQ5 A;  3SH1 A;  2BG9 A;  5IUX A;  3RQU A;  4HFD A;  2Y7Y A;  2PGZ A;  4QAB A;  2YKS A;  2XZ6 A;  5KZU A;  5BW2 A;  3TLT A;  4ZK4 A;  4A97 A;  2BYN A;  4ZK1 A;  4XK9 A;  4QH1 A;  4IL9 A;  5AFL A;  4LMK A;  3U8M A;  2BYP A;  3WTJ A;  2UZ6 A;  2YN6 A;  2BJ0 A;  4PIR A;  2BG9 B;  3U8K A;  5J5I A;  4UM3 P;  1UV6 A;  5AFM B;  2XYT A;  5HEJ A;  2PH9 A;  4A98 A;  2BG9 C;  2XQ4 A;  2Y58 A;  4UM3 S;  2ZJV A;  3P4W A;  5HEO A;  3RHW A;  3JAF A;  4DBM A;  3ZKR A;  5HEU A;  5TVC A;  4AFH A;  3ZDG A;  4UXU A;  4AFT A;  3C84 A;  4ZR6 A;  3UU4 A;  5AFM A;  3PEO A;  3WTN A;  3TLU A;  2Y56 A;  4TWD A;  2XZ5 A;  3WTM A;  4TNW A;  4ZRU A;  4ILB A;  5J5H A;  3ZDH A;  4ALX A;  3EHZ A;  1UX2 A;  4Z91 A;  4AFG A;  2C9T A;  4ZZC A;  4QAC A;  2BYS A;  2WNL A;  2VL0 A;  5LG3 A;  4HQP A;  3UU6 A;  2Y57 A;  4IRE A;  2BYR A;  2X00 D;  4UM3 A;  2Y54 A;  3SQ9 A;  5LXB A;  3IGQ A;  3WIP A;  3WTI A;  5BP0 A;  4NZB A;  5BRX A;  3JAE A;  4TNV A;  5AFN A;  4D01 A;  4QH5 A;  3U8L A;  2BR8 A;  4NPP A;  3SIO A;  2WZY A;  2XYS A;  5J5F A;  4EZ1 A;  3PMZ A;  3TLV A;  4FRR A;  4UY2 A;  5CFB A;  4F8H A;  5SYO A;  4ZJS A;  4QAA A;  2WNJ A;  5AFJ A;  3JAD A;  3UU3 A;  4ZZB A;  5JME A;  3SQ6 A;  4TWF A;  3TLS A;  5J0Z A;  4TWH A;  4HFB A; 
#chains in the Genus database with same CATH topology
 3U8N A;  4ILC A;  5CO5 A;  4ZJT A;  2QC1 B;  3T4M A;  2XQA A;  4X5T A;  2XQ8 A;  5L47 A;  4LMJ A;  4B5D A;  2XQ3 A;  4BFQ A;  4IL4 A;  3UUB A;  5AIN A;  3RQW A;  5J5G A;  3UQ7 A;  4COF A;  3LSV A;  4ILA A;  2W8F A;  2WN9 A;  4HFI A;  3RIA A;  3WTK A;  5L4E A;  2BYQ A;  2XNU A;  3WTL A;  4WV9 A;  3GUA A;  5FJV A;  2W8G A;  2XQ7 A;  4Z90 A;  2YMD A;  5HCM A;  5AFK A;  2BR7 A;  2YME A;  4HFE A;  3UU8 A;  3EI0 A;  4BQT A;  1I9B A;  4UM1 A;  5HEG A;  3TLW A;  2XQ6 A;  4QH4 A;  2X00 A;  3RIF A;  4XHE A;  3UQ4 A;  5KE4 A;  5L4H A;  4LML A;  5AFH A;  1UW6 A;  4HFH A;  3UU5 A;  3U8J A;  4HFC A;  3C79 A;  2XNV A;  2YOE A;  3WTH A;  3WTO A;  5HCJ A;  3P50 A;  3EAM A;  2BG9 E;  2XNT A;  2XQ9 A;  3RI5 A;  5HEH A;  2ZJU A;  2WNC A;  2XQ5 A;  3SH1 A;  2BG9 A;  5IUX A;  3RQU A;  4HFD A;  2Y7Y A;  2PGZ A;  4QAB A;  2YKS A;  2XZ6 A;  5KZU A;  5BW2 A;  3TLT A;  4ZK4 A;  4A97 A;  2BYN A;  4ZK1 A;  4XK9 A;  4QH1 A;  4IL9 A;  5AFL A;  4LMK A;  3U8M A;  2BYP A;  3WTJ A;  2UZ6 A;  2YN6 A;  2BJ0 A;  4PIR A;  2BG9 B;  3U8K A;  5J5I A;  4UM3 P;  1UV6 A;  5AFM B;  2XYT A;  5HEJ A;  2PH9 A;  4A98 A;  2BG9 C;  2XQ4 A;  2Y58 A;  4UM3 S;  2ZJV A;  3P4W A;  5HEO A;  3RHW A;  3JAF A;  4DBM A;  3ZKR A;  5HEU A;  5TVC A;  4AFH A;  3ZDG A;  4UXU A;  4AFT A;  3C84 A;  4ZR6 A;  3UU4 A;  5AFM A;  3PEO A;  3WTN A;  3TLU A;  2Y56 A;  4TWD A;  2XZ5 A;  3WTM A;  4TNW A;  4ZRU A;  4ILB A;  5J5H A;  3ZDH A;  4ALX A;  3EHZ A;  1UX2 A;  4Z91 A;  4AFG A;  2C9T A;  4ZZC A;  4QAC A;  2BYS A;  2WNL A;  2VL0 A;  5LG3 A;  4HQP A;  3UU6 A;  2Y57 A;  4IRE A;  2BYR A;  2X00 D;  4UM3 A;  2Y54 A;  3SQ9 A;  5LXB A;  3IGQ A;  3WIP A;  3WTI A;  5BP0 A;  4NZB A;  5BRX A;  3JAE A;  4TNV A;  5AFN A;  4D01 A;  4QH5 A;  3U8L A;  2BR8 A;  4NPP A;  3SIO A;  2WZY A;  2XYS A;  5J5F A;  4EZ1 A;  3PMZ A;  3TLV A;  4FRR A;  4UY2 A;  5CFB A;  4F8H A;  5SYO A;  4ZJS A;  4QAA A;  2WNJ A;  5AFJ A;  3JAD A;  3UU3 A;  4ZZB A;  5JME A;  3SQ6 A;  4TWF A;  3TLS A;  5J0Z A;  4TWH A;  4HFB A; 
#chains in the Genus database with same CATH homology
 3U8N A;  4ILC A;  5CO5 A;  4ZJT A;  2QC1 B;  3T4M A;  2XQA A;  4X5T A;  2XQ8 A;  5L47 A;  4LMJ A;  4B5D A;  2XQ3 A;  4BFQ A;  4IL4 A;  3UUB A;  5AIN A;  3RQW A;  5J5G A;  3UQ7 A;  4COF A;  3LSV A;  4ILA A;  2W8F A;  2WN9 A;  4HFI A;  3RIA A;  3WTK A;  5L4E A;  2BYQ A;  2XNU A;  3WTL A;  4WV9 A;  3GUA A;  5FJV A;  2W8G A;  2XQ7 A;  4Z90 A;  2YMD A;  5HCM A;  5AFK A;  2BR7 A;  2YME A;  4HFE A;  3UU8 A;  3EI0 A;  4BQT A;  1I9B A;  4UM1 A;  5HEG A;  3TLW A;  2XQ6 A;  4QH4 A;  2X00 A;  3RIF A;  4XHE A;  3UQ4 A;  5KE4 A;  5L4H A;  4LML A;  5AFH A;  1UW6 A;  4HFH A;  3UU5 A;  3U8J A;  4HFC A;  3C79 A;  2XNV A;  2YOE A;  3WTH A;  3WTO A;  5HCJ A;  3P50 A;  3EAM A;  2BG9 E;  2XNT A;  2XQ9 A;  3RI5 A;  5HEH A;  2ZJU A;  2WNC A;  2XQ5 A;  3SH1 A;  2BG9 A;  5IUX A;  3RQU A;  4HFD A;  2Y7Y A;  2PGZ A;  4QAB A;  2YKS A;  2XZ6 A;  5KZU A;  5BW2 A;  3TLT A;  4ZK4 A;  4A97 A;  2BYN A;  4ZK1 A;  4XK9 A;  4QH1 A;  4IL9 A;  5AFL A;  4LMK A;  3U8M A;  2BYP A;  3WTJ A;  2UZ6 A;  2YN6 A;  2BJ0 A;  4PIR A;  2BG9 B;  3U8K A;  5J5I A;  4UM3 P;  1UV6 A;  5AFM B;  2XYT A;  5HEJ A;  2PH9 A;  4A98 A;  2BG9 C;  2XQ4 A;  2Y58 A;  4UM3 S;  2ZJV A;  3P4W A;  5HEO A;  3RHW A;  3JAF A;  4DBM A;  3ZKR A;  5HEU A;  5TVC A;  4AFH A;  3ZDG A;  4UXU A;  4AFT A;  3C84 A;  4ZR6 A;  3UU4 A;  5AFM A;  3PEO A;  3WTN A;  3TLU A;  2Y56 A;  4TWD A;  2XZ5 A;  3WTM A;  4TNW A;  4ZRU A;  4ILB A;  5J5H A;  3ZDH A;  4ALX A;  3EHZ A;  1UX2 A;  4Z91 A;  4AFG A;  2C9T A;  4ZZC A;  4QAC A;  2BYS A;  2WNL A;  2VL0 A;  5LG3 A;  4HQP A;  3UU6 A;  2Y57 A;  4IRE A;  2BYR A;  2X00 D;  4UM3 A;  2Y54 A;  3SQ9 A;  5LXB A;  3IGQ A;  3WIP A;  3WTI A;  5BP0 A;  4NZB A;  5BRX A;  3JAE A;  4TNV A;  5AFN A;  4D01 A;  4QH5 A;  3U8L A;  2BR8 A;  4NPP A;  3SIO A;  2WZY A;  2XYS A;  5J5F A;  4EZ1 A;  3PMZ A;  3TLV A;  4FRR A;  4UY2 A;  5CFB A;  4F8H A;  5SYO A;  4ZJS A;  4QAA A;  2WNJ A;  5AFJ A;  3JAD A;  3UU3 A;  4ZZB A;  5JME A;  3SQ6 A;  4TWF A;  3TLS A;  5J0Z A;  4TWH A;  4HFB A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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