5AFJA

Alpha7-achbp in complex with lobeline and fragment 1
Total Genus 47
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
47
sequence length
204
structure length
204
Chain Sequence
EFQRKLYKELVKNYNPDVIPTQRDRPVTVYFSLSLLQIMDVDEKNQVVDVVFWLQMSWTDHYLQWNVSEYPGVKQVSVPISSLWVPDLAAYNAISKPEVLTPQLALVNSSGHVQYLPSIRQRFSCDVSGVDTESGATCKLKFGSWTHHSRELDLQMQEADISGYIPYSRFELVGVTQKRSERFYECCKEPYPDVTFTVTFRKKG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transport protein
molecule keywords ACETYLCHOLINE-BINDING PROTEIN, NEURONAL ACETYLCHOLINE RECEPT
publication title Molecular Blueprint of Allosteric Binding Sites in a Homologue of the Agonist-Binding Domain of the Alpha7 Nicotinic Acetylcholine Receptor.
pubmed doi rcsb
source organism Homo sapiens
total genus 47
structure length 204
sequence length 204
chains with identical sequence B, C, D, E
ec nomenclature
pdb deposition date 2015-01-22
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.70.170.10 Mainly Beta Distorted Sandwich Acetylcholine Binding Protein; Chain: A, Neurotransmitter-gated ion-channel ligand-binding domain 5afjA00
4QACA 4F8HA 4HQPA 5JMEA 4HFEA 2XQ3A 4AFHA 5L4EA 1UW6A 4QH1A 2XQ9A 4QH4A 5J5FA 3T4MA 4UM1A 5IUXA 2XYTA 2YN6A 4WV9A 4ILAA 2BG9B 5HCMA 3U8KA 5BRXA 3JAEA 4LMLA 2PGZA 2W8FA 4XK9A 3TLSA 3UU8A 2YMEA 4BFQA 4ZK4A 4D01A 3LSVA 4ILCA 2BG9A 4HFIA 5HEGA 5CFBA 2ZJVA 4ZZBA 4QAAA 4X5TA 2XYSA 2BYNA 3P4WA 4PIRA 4ZJSA 3TLUA 3UUBA 4UM3S 3JAFA 2XQ7A 5LG3A 4AFGA 3WTLA 4TWFA 3EHZA 4NPPA 4ZZCA 3C84A 3UQ7A 5AFMA 2XNTA 5AFKA 3RI5A 4HFCA 5FJVA 2BJ0A 5AFLA 3U8MA 4LMKA 3WTMA 3WTNA 5L47A 3SH1A 2X00A 3ZDGA 5BP0A 2PH9A 3P50A 2C9TA 5AFJA 4HFDA 4UM3A 3SIOA 4B5DA 3WTIA 2ZJUA 4UM3P 3WIPA 5BW2A 2WNCA 3PEOA 4QABA 3WTKA 3UU3A 2WN9A 2XQ5A 3GUAA 4A97A 2X00D 3EAMA 2XZ6A 4ZRUA 4LMJA 3TLTA 3U8JA 5AFMB 5AFNA 2WNLA 1UV6A 5KZUA 1I9BA 2BG9C 2BYQA 4NZBA 2YOEA 4BQTA 5J5GA 4AFTA 3EI0A 3RIFA 5AINA 2YKSA 3IGQA 3UU5A 4UY2A 4A98A 2Y57A 2XQAA 2XQ4A 2WNJA 3WTHA 5HEOA 2XZ5A 4ILBA 5SYOA 3SQ9A 4COFA 4IREA 4DBMA 4FRRA 3U8LA 2BYRA 2QC1B 3TLWA 4ZJTA 4IL4A 3TLVA 2WZYA 3ZKRA 3UU6A 3UQ4A 2Y56A 2YMDA 5L4HA 5CO5A 3RQUA 3RIAA 3JADA 4HFBA 4HFHA 2XQ8A 4XHEA 3ZDHA 2BYPA 3WTJA 4UXUA 5HEJA 5KE4A 2W8GA 5AFHA 4Z90A 4TWDA 3C79A 5J5IA 5LXBA 5HEHA 5HCJA 2BR8A 1UX2A 2Y58A 2BR7A 4TNWA 4QH5A 3UU4A 4EZ1A 2Y7YA 5J5HA 5TVCA 5J0ZA 3WTOA 4IL9A 2XNVA 4Z91A 4TNVA 2VL0A 4ALXA 2XNUA 3PMZA 3RHWA 3U8NA 2BYSA 2UZ6A 4ZK1A 3SQ6A 2XQ6A 3RQWA 2Y54A 4ZR6A 4TWHA 2BG9E 5HEUA
chains in the Genus database with same CATH superfamily
4QACA 4F8HA 4HQPA 5JMEA 4HFEA 2XQ3A 4AFHA 5L4EA 1UW6A 4QH1A 2XQ9A 4QH4A 5J5FA 3T4MA 4UM1A 5IUXA 2XYTA 2YN6A 4WV9A 4ILAA 2BG9B 5HCMA 3U8KA 5BRXA 3JAEA 4LMLA 2PGZA 2W8FA 4XK9A 3TLSA 3UU8A 2YMEA 4BFQA 4ZK4A 4D01A 3LSVA 4ILCA 2BG9A 4HFIA 5HEGA 5CFBA 2ZJVA 4ZZBA 4QAAA 4X5TA 2XYSA 2BYNA 3P4WA 4PIRA 4ZJSA 3TLUA 3UUBA 4UM3S 3JAFA 2XQ7A 5LG3A 4AFGA 3WTLA 4TWFA 3EHZA 4NPPA 4ZZCA 3C84A 3UQ7A 5AFMA 2XNTA 5AFKA 3RI5A 4HFCA 5FJVA 2BJ0A 5AFLA 3U8MA 4LMKA 3WTMA 3WTNA 5L47A 3SH1A 2X00A 3ZDGA 5BP0A 2PH9A 3P50A 2C9TA 5AFJA 4HFDA 4UM3A 3SIOA 4B5DA 3WTIA 2ZJUA 4UM3P 3WIPA 5BW2A 2WNCA 3PEOA 4QABA 3WTKA 3UU3A 2WN9A 2XQ5A 3GUAA 4A97A 2X00D 3EAMA 2XZ6A 4ZRUA 4LMJA 3TLTA 3U8JA 5AFMB 5AFNA 2WNLA 1UV6A 5KZUA 1I9BA 2BG9C 2BYQA 4NZBA 2YOEA 4BQTA 5J5GA 4AFTA 3EI0A 3RIFA 5AINA 2YKSA 3IGQA 3UU5A 4UY2A 4A98A 2Y57A 2XQAA 2XQ4A 2WNJA 3WTHA 5HEOA 2XZ5A 4ILBA 5SYOA 3SQ9A 4COFA 4IREA 4DBMA 4FRRA 3U8LA 2BYRA 2QC1B 3TLWA 4ZJTA 4IL4A 3TLVA 2WZYA 3ZKRA 3UU6A 3UQ4A 2Y56A 2YMDA 5L4HA 5CO5A 3RQUA 3RIAA 3JADA 4HFBA 4HFHA 2XQ8A 4XHEA 3ZDHA 2BYPA 3WTJA 4UXUA 5HEJA 5KE4A 2W8GA 5AFHA 4Z90A 4TWDA 3C79A 5J5IA 5LXBA 5HEHA 5HCJA 2BR8A 1UX2A 2Y58A 2BR7A 4TNWA 4QH5A 3UU4A 4EZ1A 2Y7YA 5J5HA 5TVCA 5J0ZA 3WTOA 4IL9A 2XNVA 4Z91A 4TNVA 2VL0A 4ALXA 2XNUA 3PMZA 3RHWA 3U8NA 2BYSA 2UZ6A 4ZK1A 3SQ6A 2XQ6A 3RQWA 2Y54A 4ZR6A 4TWHA 2BG9E 5HEUA
chains in the Genus database with same CATH topology
4QACA 4F8HA 4HQPA 5JMEA 4HFEA 2XQ3A 4AFHA 5L4EA 1UW6A 4QH1A 2XQ9A 4QH4A 5J5FA 3T4MA 4UM1A 5IUXA 2XYTA 2YN6A 4WV9A 4ILAA 2BG9B 5HCMA 3U8KA 5BRXA 3JAEA 4LMLA 2PGZA 2W8FA 4XK9A 3TLSA 3UU8A 2YMEA 4BFQA 4ZK4A 4D01A 3LSVA 4ILCA 2BG9A 4HFIA 5HEGA 5CFBA 2ZJVA 4ZZBA 4QAAA 4X5TA 2XYSA 2BYNA 3P4WA 4PIRA 4ZJSA 3TLUA 3UUBA 4UM3S 3JAFA 2XQ7A 5LG3A 4AFGA 3WTLA 4TWFA 3EHZA 4NPPA 4ZZCA 3C84A 3UQ7A 5AFMA 2XNTA 5AFKA 3RI5A 4HFCA 5FJVA 2BJ0A 5AFLA 3U8MA 4LMKA 3WTMA 3WTNA 5L47A 3SH1A 2X00A 3ZDGA 5BP0A 2PH9A 3P50A 2C9TA 5AFJA 4HFDA 4UM3A 3SIOA 4B5DA 3WTIA 2ZJUA 4UM3P 3WIPA 5BW2A 2WNCA 3PEOA 4QABA 3WTKA 3UU3A 2WN9A 2XQ5A 3GUAA 4A97A 2X00D 3EAMA 2XZ6A 4ZRUA 4LMJA 3TLTA 3U8JA 5AFMB 5AFNA 2WNLA 1UV6A 5KZUA 1I9BA 2BG9C 2BYQA 4NZBA 2YOEA 4BQTA 5J5GA 4AFTA 3EI0A 3RIFA 5AINA 2YKSA 3IGQA 3UU5A 4UY2A 4A98A 2Y57A 2XQAA 2XQ4A 2WNJA 3WTHA 5HEOA 2XZ5A 4ILBA 5SYOA 3SQ9A 4COFA 4IREA 4DBMA 4FRRA 3U8LA 2BYRA 2QC1B 3TLWA 4ZJTA 4IL4A 3TLVA 2WZYA 3ZKRA 3UU6A 3UQ4A 2Y56A 2YMDA 5L4HA 5CO5A 3RQUA 3RIAA 3JADA 4HFBA 4HFHA 2XQ8A 4XHEA 3ZDHA 2BYPA 3WTJA 4UXUA 5HEJA 5KE4A 2W8GA 5AFHA 4Z90A 4TWDA 3C79A 5J5IA 5LXBA 5HEHA 5HCJA 2BR8A 1UX2A 2Y58A 2BR7A 4TNWA 4QH5A 3UU4A 4EZ1A 2Y7YA 5J5HA 5TVCA 5J0ZA 3WTOA 4IL9A 2XNVA 4Z91A 4TNVA 2VL0A 4ALXA 2XNUA 3PMZA 3RHWA 3U8NA 2BYSA 2UZ6A 4ZK1A 3SQ6A 2XQ6A 3RQWA 2Y54A 4ZR6A 4TWHA 2BG9E 5HEUA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4QAC A;  4F8H A;  4HQP A;  5JME A;  4HFE A;  2XQ3 A;  4AFH A;  5L4E A;  1UW6 A;  4QH1 A;  2XQ9 A;  4QH4 A;  5J5F A;  3T4M A;  4UM1 A;  5IUX A;  2XYT A;  2YN6 A;  4WV9 A;  4ILA A;  2BG9 B;  5HCM A;  3U8K A;  5BRX A;  3JAE A;  4LML A;  2PGZ A;  2W8F A;  4XK9 A;  3TLS A;  3UU8 A;  2YME A;  4BFQ A;  4ZK4 A;  4D01 A;  3LSV A;  4ILC A;  2BG9 A;  4HFI A;  5HEG A;  5CFB A;  2ZJV A;  4ZZB A;  4QAA A;  4X5T A;  2XYS A;  2BYN A;  3P4W A;  4PIR A;  4ZJS A;  3TLU A;  3UUB A;  4UM3 S;  3JAF A;  2XQ7 A;  5LG3 A;  4AFG A;  3WTL A;  4TWF A;  3EHZ A;  4NPP A;  4ZZC A;  3C84 A;  3UQ7 A;  5AFM A;  2XNT A;  5AFK A;  3RI5 A;  4HFC A;  5FJV A;  2BJ0 A;  5AFL A;  3U8M A;  4LMK A;  3WTM A;  3WTN A;  5L47 A;  3SH1 A;  2X00 A;  3ZDG A;  5BP0 A;  2PH9 A;  3P50 A;  2C9T A;  5AFJ A;  4HFD A;  4UM3 A;  3SIO A;  4B5D A;  3WTI A;  2ZJU A;  4UM3 P;  3WIP A;  5BW2 A;  2WNC A;  3PEO A;  4QAB A;  3WTK A;  3UU3 A;  2WN9 A;  2XQ5 A;  3GUA A;  4A97 A;  2X00 D;  3EAM A;  2XZ6 A;  4ZRU A;  4LMJ A;  3TLT A;  3U8J A;  5AFM B;  5AFN A;  2WNL A;  1UV6 A;  5KZU A;  1I9B A;  2BG9 C;  2BYQ A;  4NZB A;  2YOE A;  4BQT A;  5J5G A;  4AFT A;  3EI0 A;  3RIF A;  5AIN A;  2YKS A;  3IGQ A;  3UU5 A;  4UY2 A;  4A98 A;  2Y57 A;  2XQA A;  2XQ4 A;  2WNJ A;  3WTH A;  5HEO A;  2XZ5 A;  4ILB A;  5SYO A;  3SQ9 A;  4COF A;  4IRE A;  4DBM A;  4FRR A;  3U8L A;  2BYR A;  2QC1 B;  3TLW A;  4ZJT A;  4IL4 A;  3TLV A;  2WZY A;  3ZKR A;  3UU6 A;  3UQ4 A;  2Y56 A;  2YMD A;  5L4H A;  5CO5 A;  3RQU A;  3RIA A;  3JAD A;  4HFB A;  4HFH A;  2XQ8 A;  4XHE A;  3ZDH A;  2BYP A;  3WTJ A;  4UXU A;  5HEJ A;  5KE4 A;  2W8G A;  5AFH A;  4Z90 A;  4TWD A;  3C79 A;  5J5I A;  5LXB A;  5HEH A;  5HCJ A;  2BR8 A;  1UX2 A;  2Y58 A;  2BR7 A;  4TNW A;  4QH5 A;  3UU4 A;  4EZ1 A;  2Y7Y A;  5J5H A;  5TVC A;  5J0Z A;  3WTO A;  4IL9 A;  2XNV A;  4Z91 A;  4TNV A;  2VL0 A;  4ALX A;  2XNU A;  3PMZ A;  3RHW A;  3U8N A;  2BYS A;  2UZ6 A;  4ZK1 A;  3SQ6 A;  2XQ6 A;  3RQW A;  2Y54 A;  4ZR6 A;  4TWH A;  2BG9 E;  5HEU A; 
#chains in the Genus database with same CATH topology
 4QAC A;  4F8H A;  4HQP A;  5JME A;  4HFE A;  2XQ3 A;  4AFH A;  5L4E A;  1UW6 A;  4QH1 A;  2XQ9 A;  4QH4 A;  5J5F A;  3T4M A;  4UM1 A;  5IUX A;  2XYT A;  2YN6 A;  4WV9 A;  4ILA A;  2BG9 B;  5HCM A;  3U8K A;  5BRX A;  3JAE A;  4LML A;  2PGZ A;  2W8F A;  4XK9 A;  3TLS A;  3UU8 A;  2YME A;  4BFQ A;  4ZK4 A;  4D01 A;  3LSV A;  4ILC A;  2BG9 A;  4HFI A;  5HEG A;  5CFB A;  2ZJV A;  4ZZB A;  4QAA A;  4X5T A;  2XYS A;  2BYN A;  3P4W A;  4PIR A;  4ZJS A;  3TLU A;  3UUB A;  4UM3 S;  3JAF A;  2XQ7 A;  5LG3 A;  4AFG A;  3WTL A;  4TWF A;  3EHZ A;  4NPP A;  4ZZC A;  3C84 A;  3UQ7 A;  5AFM A;  2XNT A;  5AFK A;  3RI5 A;  4HFC A;  5FJV A;  2BJ0 A;  5AFL A;  3U8M A;  4LMK A;  3WTM A;  3WTN A;  5L47 A;  3SH1 A;  2X00 A;  3ZDG A;  5BP0 A;  2PH9 A;  3P50 A;  2C9T A;  5AFJ A;  4HFD A;  4UM3 A;  3SIO A;  4B5D A;  3WTI A;  2ZJU A;  4UM3 P;  3WIP A;  5BW2 A;  2WNC A;  3PEO A;  4QAB A;  3WTK A;  3UU3 A;  2WN9 A;  2XQ5 A;  3GUA A;  4A97 A;  2X00 D;  3EAM A;  2XZ6 A;  4ZRU A;  4LMJ A;  3TLT A;  3U8J A;  5AFM B;  5AFN A;  2WNL A;  1UV6 A;  5KZU A;  1I9B A;  2BG9 C;  2BYQ A;  4NZB A;  2YOE A;  4BQT A;  5J5G A;  4AFT A;  3EI0 A;  3RIF A;  5AIN A;  2YKS A;  3IGQ A;  3UU5 A;  4UY2 A;  4A98 A;  2Y57 A;  2XQA A;  2XQ4 A;  2WNJ A;  3WTH A;  5HEO A;  2XZ5 A;  4ILB A;  5SYO A;  3SQ9 A;  4COF A;  4IRE A;  4DBM A;  4FRR A;  3U8L A;  2BYR A;  2QC1 B;  3TLW A;  4ZJT A;  4IL4 A;  3TLV A;  2WZY A;  3ZKR A;  3UU6 A;  3UQ4 A;  2Y56 A;  2YMD A;  5L4H A;  5CO5 A;  3RQU A;  3RIA A;  3JAD A;  4HFB A;  4HFH A;  2XQ8 A;  4XHE A;  3ZDH A;  2BYP A;  3WTJ A;  4UXU A;  5HEJ A;  5KE4 A;  2W8G A;  5AFH A;  4Z90 A;  4TWD A;  3C79 A;  5J5I A;  5LXB A;  5HEH A;  5HCJ A;  2BR8 A;  1UX2 A;  2Y58 A;  2BR7 A;  4TNW A;  4QH5 A;  3UU4 A;  4EZ1 A;  2Y7Y A;  5J5H A;  5TVC A;  5J0Z A;  3WTO A;  4IL9 A;  2XNV A;  4Z91 A;  4TNV A;  2VL0 A;  4ALX A;  2XNU A;  3PMZ A;  3RHW A;  3U8N A;  2BYS A;  2UZ6 A;  4ZK1 A;  3SQ6 A;  2XQ6 A;  3RQW A;  2Y54 A;  4ZR6 A;  4TWH A;  2BG9 E;  5HEU A; 
#chains in the Genus database with same CATH homology
 4QAC A;  4F8H A;  4HQP A;  5JME A;  4HFE A;  2XQ3 A;  4AFH A;  5L4E A;  1UW6 A;  4QH1 A;  2XQ9 A;  4QH4 A;  5J5F A;  3T4M A;  4UM1 A;  5IUX A;  2XYT A;  2YN6 A;  4WV9 A;  4ILA A;  2BG9 B;  5HCM A;  3U8K A;  5BRX A;  3JAE A;  4LML A;  2PGZ A;  2W8F A;  4XK9 A;  3TLS A;  3UU8 A;  2YME A;  4BFQ A;  4ZK4 A;  4D01 A;  3LSV A;  4ILC A;  2BG9 A;  4HFI A;  5HEG A;  5CFB A;  2ZJV A;  4ZZB A;  4QAA A;  4X5T A;  2XYS A;  2BYN A;  3P4W A;  4PIR A;  4ZJS A;  3TLU A;  3UUB A;  4UM3 S;  3JAF A;  2XQ7 A;  5LG3 A;  4AFG A;  3WTL A;  4TWF A;  3EHZ A;  4NPP A;  4ZZC A;  3C84 A;  3UQ7 A;  5AFM A;  2XNT A;  5AFK A;  3RI5 A;  4HFC A;  5FJV A;  2BJ0 A;  5AFL A;  3U8M A;  4LMK A;  3WTM A;  3WTN A;  5L47 A;  3SH1 A;  2X00 A;  3ZDG A;  5BP0 A;  2PH9 A;  3P50 A;  2C9T A;  5AFJ A;  4HFD A;  4UM3 A;  3SIO A;  4B5D A;  3WTI A;  2ZJU A;  4UM3 P;  3WIP A;  5BW2 A;  2WNC A;  3PEO A;  4QAB A;  3WTK A;  3UU3 A;  2WN9 A;  2XQ5 A;  3GUA A;  4A97 A;  2X00 D;  3EAM A;  2XZ6 A;  4ZRU A;  4LMJ A;  3TLT A;  3U8J A;  5AFM B;  5AFN A;  2WNL A;  1UV6 A;  5KZU A;  1I9B A;  2BG9 C;  2BYQ A;  4NZB A;  2YOE A;  4BQT A;  5J5G A;  4AFT A;  3EI0 A;  3RIF A;  5AIN A;  2YKS A;  3IGQ A;  3UU5 A;  4UY2 A;  4A98 A;  2Y57 A;  2XQA A;  2XQ4 A;  2WNJ A;  3WTH A;  5HEO A;  2XZ5 A;  4ILB A;  5SYO A;  3SQ9 A;  4COF A;  4IRE A;  4DBM A;  4FRR A;  3U8L A;  2BYR A;  2QC1 B;  3TLW A;  4ZJT A;  4IL4 A;  3TLV A;  2WZY A;  3ZKR A;  3UU6 A;  3UQ4 A;  2Y56 A;  2YMD A;  5L4H A;  5CO5 A;  3RQU A;  3RIA A;  3JAD A;  4HFB A;  4HFH A;  2XQ8 A;  4XHE A;  3ZDH A;  2BYP A;  3WTJ A;  4UXU A;  5HEJ A;  5KE4 A;  2W8G A;  5AFH A;  4Z90 A;  4TWD A;  3C79 A;  5J5I A;  5LXB A;  5HEH A;  5HCJ A;  2BR8 A;  1UX2 A;  2Y58 A;  2BR7 A;  4TNW A;  4QH5 A;  3UU4 A;  4EZ1 A;  2Y7Y A;  5J5H A;  5TVC A;  5J0Z A;  3WTO A;  4IL9 A;  2XNV A;  4Z91 A;  4TNV A;  2VL0 A;  4ALX A;  2XNU A;  3PMZ A;  3RHW A;  3U8N A;  2BYS A;  2UZ6 A;  4ZK1 A;  3SQ6 A;  2XQ6 A;  3RQW A;  2Y54 A;  4ZR6 A;  4TWH A;  2BG9 E;  5HEU A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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