5AFJA

Alpha7-achbp in complex with lobeline and fragment 1
Total Genus 47
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
47
sequence length
204
structure length
204
Chain Sequence
EFQRKLYKELVKNYNPDVIPTQRDRPVTVYFSLSLLQIMDVDEKNQVVDVVFWLQMSWTDHYLQWNVSEYPGVKQVSVPISSLWVPDLAAYNAISKPEVLTPQLALVNSSGHVQYLPSIRQRFSCDVSGVDTESGATCKLKFGSWTHHSRELDLQMQEADISGYIPYSRFELVGVTQKRSERFYECCKEPYPDVTFTVTFRKKG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transport protein
source organism Homo sapiens
publication title Molecular Blueprint of Allosteric Binding Sites in a Homologue of the Agonist-Binding Domain of the Alpha7 Nicotinic Acetylcholine Receptor.
pubmed doi rcsb
molecule keywords ACETYLCHOLINE-BINDING PROTEIN, NEURONAL ACETYLCHOLINE RECEPT
total genus 47
structure length 204
sequence length 204
chains with identical sequence B, C, D, E
ec nomenclature
pdb deposition date 2015-01-22
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.70.170.10 Mainly Beta Distorted Sandwich Acetylcholine Binding Protein; Chain: A, Neurotransmitter-gated ion-channel ligand-binding domain 5afjA00
3U8KA 4IREA 4QACA 3RQWA 4Z90A 2XQAA 4AFTA 2Y7YA 4ZJSA 3SQ6A 5AFHA 4ILBA 3UUBA 5BRXA 4ALXA 4HFBA 5J5HA 4AFGA 4TNVA 5LG3A 3C84A 5HCMA 2BYPA 4NZBA 3TLTA 3UU5A 3JAFA 4TWHA 4A98A 5AFMA 5AFLA 4A97A 2W8FA 4COFA 2BR7A 2WN9A 4HFIA 3WTMA 1UV6A 4ZJTA 2XYTA 4BQTA 5BW2A 4XHEA 3SH1A 2X00A 5J5IA 2X00D 4LMKA 5SYOA 3EHZA 5J5FA 5TVCA 5AFNA 3ZDGA 4ILAA 2YMEA 4HFDA 5HEOA 1I9BA 2XNUA 4QH5A 4ZK1A 4UM3A 2Y58A 4NPPA 3WTLA 4UY2A 3SQ9A 3WIPA 2BYSA 5HEJA 4BFQA 3RI5A 5LXBA 2YMDA 3IGQA 5KE4A 2XQ5A 4ZK4A 2BYRA 4FRRA 2QC1B 4UM3S 4B5DA 2XYSA 4XK9A 2YN6A 3WTIA 5CFBA 2BG9B 5J0ZA 3UQ4A 3TLUA 3JADA 5IUXA 4TNWA 4QH4A 4WV9A 3UQ7A 2XQ4A 3C79A 2BG9C 4LMLA 4DBMA 4IL9A 5BP0A 2YKSA 2ZJUA 2ZJVA 3RIAA 4UM3P 3T4MA 5FJVA 2BR8A 2VL0A 2XZ5A 2PGZA 3PMZA 3RIFA 5AFJA 5HEHA 3WTJA 2Y56A 4X5TA 3U8JA 5AINA 5AFMB 5AFKA 3UU8A 5CO5A 2BJ0A 5JMEA 2Y54A 2PH9A 2C9TA 3ZDHA 4LMJA 3U8MA 2WNLA 3RQUA 3P4WA 4TWFA 2XZ6A 2Y57A 4UXUA 4ZR6A 4ZRUA 4HFHA 3RHWA 3UU6A 2BYNA 3TLSA 5KZUA 2XQ9A 4QABA 4TWDA 3U8LA 2XNVA 4ZZCA 4UM1A 5HEGA 3UU3A 4QH1A 3GUAA 2WNJA 3LSVA 3WTOA 2BYQA 2UZ6A 3SIOA 2BG9E 3UU4A 3ZKRA 2WNCA 4HFEA 5L47A 2XQ6A 2XNTA 4ILCA 4F8HA 2YOEA 2XQ8A 3WTHA 5J5GA 4AFHA 4EZ1A 3U8NA 2XQ7A 5L4HA 3WTKA 1UW6A 3WTNA 4QAAA 4HFCA 3EAMA 1UX2A 3TLVA 2WZYA 2XQ3A 3JAEA 4IL4A 4Z91A 5HCJA 3PEOA 4PIRA 2W8GA 4D01A 5HEUA 4ZZBA 3TLWA 4HQPA 2BG9A 3EI0A 3P50A 5L4EA
chains in the Genus database with same CATH superfamily
3U8KA 4IREA 4QACA 3RQWA 4Z90A 2XQAA 4AFTA 2Y7YA 4ZJSA 3SQ6A 5AFHA 4ILBA 3UUBA 5BRXA 4ALXA 4HFBA 5J5HA 4AFGA 4TNVA 5LG3A 3C84A 5HCMA 2BYPA 4NZBA 3TLTA 3UU5A 3JAFA 4TWHA 4A98A 5AFMA 5AFLA 4A97A 2W8FA 4COFA 2BR7A 2WN9A 4HFIA 3WTMA 1UV6A 4ZJTA 2XYTA 4BQTA 5BW2A 4XHEA 3SH1A 2X00A 5J5IA 2X00D 4LMKA 5SYOA 3EHZA 5J5FA 5TVCA 5AFNA 3ZDGA 4ILAA 2YMEA 4HFDA 5HEOA 1I9BA 2XNUA 4QH5A 4ZK1A 4UM3A 2Y58A 4NPPA 3WTLA 4UY2A 3SQ9A 3WIPA 2BYSA 5HEJA 4BFQA 3RI5A 5LXBA 2YMDA 3IGQA 5KE4A 2XQ5A 4ZK4A 2BYRA 4FRRA 2QC1B 4UM3S 4B5DA 2XYSA 4XK9A 2YN6A 3WTIA 5CFBA 2BG9B 5J0ZA 3UQ4A 3TLUA 3JADA 5IUXA 4TNWA 4QH4A 4WV9A 3UQ7A 2XQ4A 3C79A 2BG9C 4LMLA 4DBMA 4IL9A 5BP0A 2YKSA 2ZJUA 2ZJVA 3RIAA 4UM3P 3T4MA 5FJVA 2BR8A 2VL0A 2XZ5A 2PGZA 3PMZA 3RIFA 5AFJA 5HEHA 3WTJA 2Y56A 4X5TA 3U8JA 5AINA 5AFMB 5AFKA 3UU8A 5CO5A 2BJ0A 5JMEA 2Y54A 2PH9A 2C9TA 3ZDHA 4LMJA 3U8MA 2WNLA 3RQUA 3P4WA 4TWFA 2XZ6A 2Y57A 4UXUA 4ZR6A 4ZRUA 4HFHA 3RHWA 3UU6A 2BYNA 3TLSA 5KZUA 2XQ9A 4QABA 4TWDA 3U8LA 2XNVA 4ZZCA 4UM1A 5HEGA 3UU3A 4QH1A 3GUAA 2WNJA 3LSVA 3WTOA 2BYQA 2UZ6A 3SIOA 2BG9E 3UU4A 3ZKRA 2WNCA 4HFEA 5L47A 2XQ6A 2XNTA 4ILCA 4F8HA 2YOEA 2XQ8A 3WTHA 5J5GA 4AFHA 4EZ1A 3U8NA 2XQ7A 5L4HA 3WTKA 1UW6A 3WTNA 4QAAA 4HFCA 3EAMA 1UX2A 3TLVA 2WZYA 2XQ3A 3JAEA 4IL4A 4Z91A 5HCJA 3PEOA 4PIRA 2W8GA 4D01A 5HEUA 4ZZBA 3TLWA 4HQPA 2BG9A 3EI0A 3P50A 5L4EA
chains in the Genus database with same CATH topology
3U8KA 4IREA 4QACA 3RQWA 4Z90A 2XQAA 4AFTA 2Y7YA 4ZJSA 3SQ6A 5AFHA 4ILBA 3UUBA 5BRXA 4ALXA 4HFBA 5J5HA 4AFGA 4TNVA 5LG3A 3C84A 5HCMA 2BYPA 4NZBA 3TLTA 3UU5A 3JAFA 4TWHA 4A98A 5AFMA 5AFLA 4A97A 2W8FA 4COFA 2BR7A 2WN9A 4HFIA 3WTMA 1UV6A 4ZJTA 2XYTA 4BQTA 5BW2A 4XHEA 3SH1A 2X00A 5J5IA 2X00D 4LMKA 5SYOA 3EHZA 5J5FA 5TVCA 5AFNA 3ZDGA 4ILAA 2YMEA 4HFDA 5HEOA 1I9BA 2XNUA 4QH5A 4ZK1A 4UM3A 2Y58A 4NPPA 3WTLA 4UY2A 3SQ9A 3WIPA 2BYSA 5HEJA 4BFQA 3RI5A 5LXBA 2YMDA 3IGQA 5KE4A 2XQ5A 4ZK4A 2BYRA 4FRRA 2QC1B 4UM3S 4B5DA 2XYSA 4XK9A 2YN6A 3WTIA 5CFBA 2BG9B 5J0ZA 3UQ4A 3TLUA 3JADA 5IUXA 4TNWA 4QH4A 4WV9A 3UQ7A 2XQ4A 3C79A 2BG9C 4LMLA 4DBMA 4IL9A 5BP0A 2YKSA 2ZJUA 2ZJVA 3RIAA 4UM3P 3T4MA 5FJVA 2BR8A 2VL0A 2XZ5A 2PGZA 3PMZA 3RIFA 5AFJA 5HEHA 3WTJA 2Y56A 4X5TA 3U8JA 5AINA 5AFMB 5AFKA 3UU8A 5CO5A 2BJ0A 5JMEA 2Y54A 2PH9A 2C9TA 3ZDHA 4LMJA 3U8MA 2WNLA 3RQUA 3P4WA 4TWFA 2XZ6A 2Y57A 4UXUA 4ZR6A 4ZRUA 4HFHA 3RHWA 3UU6A 2BYNA 3TLSA 5KZUA 2XQ9A 4QABA 4TWDA 3U8LA 2XNVA 4ZZCA 4UM1A 5HEGA 3UU3A 4QH1A 3GUAA 2WNJA 3LSVA 3WTOA 2BYQA 2UZ6A 3SIOA 2BG9E 3UU4A 3ZKRA 2WNCA 4HFEA 5L47A 2XQ6A 2XNTA 4ILCA 4F8HA 2YOEA 2XQ8A 3WTHA 5J5GA 4AFHA 4EZ1A 3U8NA 2XQ7A 5L4HA 3WTKA 1UW6A 3WTNA 4QAAA 4HFCA 3EAMA 1UX2A 3TLVA 2WZYA 2XQ3A 3JAEA 4IL4A 4Z91A 5HCJA 3PEOA 4PIRA 2W8GA 4D01A 5HEUA 4ZZBA 3TLWA 4HQPA 2BG9A 3EI0A 3P50A 5L4EA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3U8K A;  4IRE A;  4QAC A;  3RQW A;  4Z90 A;  2XQA A;  4AFT A;  2Y7Y A;  4ZJS A;  3SQ6 A;  5AFH A;  4ILB A;  3UUB A;  5BRX A;  4ALX A;  4HFB A;  5J5H A;  4AFG A;  4TNV A;  5LG3 A;  3C84 A;  5HCM A;  2BYP A;  4NZB A;  3TLT A;  3UU5 A;  3JAF A;  4TWH A;  4A98 A;  5AFM A;  5AFL A;  4A97 A;  2W8F A;  4COF A;  2BR7 A;  2WN9 A;  4HFI A;  3WTM A;  1UV6 A;  4ZJT A;  2XYT A;  4BQT A;  5BW2 A;  4XHE A;  3SH1 A;  2X00 A;  5J5I A;  2X00 D;  4LMK A;  5SYO A;  3EHZ A;  5J5F A;  5TVC A;  5AFN A;  3ZDG A;  4ILA A;  2YME A;  4HFD A;  5HEO A;  1I9B A;  2XNU A;  4QH5 A;  4ZK1 A;  4UM3 A;  2Y58 A;  4NPP A;  3WTL A;  4UY2 A;  3SQ9 A;  3WIP A;  2BYS A;  5HEJ A;  4BFQ A;  3RI5 A;  5LXB A;  2YMD A;  3IGQ A;  5KE4 A;  2XQ5 A;  4ZK4 A;  2BYR A;  4FRR A;  2QC1 B;  4UM3 S;  4B5D A;  2XYS A;  4XK9 A;  2YN6 A;  3WTI A;  5CFB A;  2BG9 B;  5J0Z A;  3UQ4 A;  3TLU A;  3JAD A;  5IUX A;  4TNW A;  4QH4 A;  4WV9 A;  3UQ7 A;  2XQ4 A;  3C79 A;  2BG9 C;  4LML A;  4DBM A;  4IL9 A;  5BP0 A;  2YKS A;  2ZJU A;  2ZJV A;  3RIA A;  4UM3 P;  3T4M A;  5FJV A;  2BR8 A;  2VL0 A;  2XZ5 A;  2PGZ A;  3PMZ A;  3RIF A;  5AFJ A;  5HEH A;  3WTJ A;  2Y56 A;  4X5T A;  3U8J A;  5AIN A;  5AFM B;  5AFK A;  3UU8 A;  5CO5 A;  2BJ0 A;  5JME A;  2Y54 A;  2PH9 A;  2C9T A;  3ZDH A;  4LMJ A;  3U8M A;  2WNL A;  3RQU A;  3P4W A;  4TWF A;  2XZ6 A;  2Y57 A;  4UXU A;  4ZR6 A;  4ZRU A;  4HFH A;  3RHW A;  3UU6 A;  2BYN A;  3TLS A;  5KZU A;  2XQ9 A;  4QAB A;  4TWD A;  3U8L A;  2XNV A;  4ZZC A;  4UM1 A;  5HEG A;  3UU3 A;  4QH1 A;  3GUA A;  2WNJ A;  3LSV A;  3WTO A;  2BYQ A;  2UZ6 A;  3SIO A;  2BG9 E;  3UU4 A;  3ZKR A;  2WNC A;  4HFE A;  5L47 A;  2XQ6 A;  2XNT A;  4ILC A;  4F8H A;  2YOE A;  2XQ8 A;  3WTH A;  5J5G A;  4AFH A;  4EZ1 A;  3U8N A;  2XQ7 A;  5L4H A;  3WTK A;  1UW6 A;  3WTN A;  4QAA A;  4HFC A;  3EAM A;  1UX2 A;  3TLV A;  2WZY A;  2XQ3 A;  3JAE A;  4IL4 A;  4Z91 A;  5HCJ A;  3PEO A;  4PIR A;  2W8G A;  4D01 A;  5HEU A;  4ZZB A;  3TLW A;  4HQP A;  2BG9 A;  3EI0 A;  3P50 A;  5L4E A; 
#chains in the Genus database with same CATH topology
 3U8K A;  4IRE A;  4QAC A;  3RQW A;  4Z90 A;  2XQA A;  4AFT A;  2Y7Y A;  4ZJS A;  3SQ6 A;  5AFH A;  4ILB A;  3UUB A;  5BRX A;  4ALX A;  4HFB A;  5J5H A;  4AFG A;  4TNV A;  5LG3 A;  3C84 A;  5HCM A;  2BYP A;  4NZB A;  3TLT A;  3UU5 A;  3JAF A;  4TWH A;  4A98 A;  5AFM A;  5AFL A;  4A97 A;  2W8F A;  4COF A;  2BR7 A;  2WN9 A;  4HFI A;  3WTM A;  1UV6 A;  4ZJT A;  2XYT A;  4BQT A;  5BW2 A;  4XHE A;  3SH1 A;  2X00 A;  5J5I A;  2X00 D;  4LMK A;  5SYO A;  3EHZ A;  5J5F A;  5TVC A;  5AFN A;  3ZDG A;  4ILA A;  2YME A;  4HFD A;  5HEO A;  1I9B A;  2XNU A;  4QH5 A;  4ZK1 A;  4UM3 A;  2Y58 A;  4NPP A;  3WTL A;  4UY2 A;  3SQ9 A;  3WIP A;  2BYS A;  5HEJ A;  4BFQ A;  3RI5 A;  5LXB A;  2YMD A;  3IGQ A;  5KE4 A;  2XQ5 A;  4ZK4 A;  2BYR A;  4FRR A;  2QC1 B;  4UM3 S;  4B5D A;  2XYS A;  4XK9 A;  2YN6 A;  3WTI A;  5CFB A;  2BG9 B;  5J0Z A;  3UQ4 A;  3TLU A;  3JAD A;  5IUX A;  4TNW A;  4QH4 A;  4WV9 A;  3UQ7 A;  2XQ4 A;  3C79 A;  2BG9 C;  4LML A;  4DBM A;  4IL9 A;  5BP0 A;  2YKS A;  2ZJU A;  2ZJV A;  3RIA A;  4UM3 P;  3T4M A;  5FJV A;  2BR8 A;  2VL0 A;  2XZ5 A;  2PGZ A;  3PMZ A;  3RIF A;  5AFJ A;  5HEH A;  3WTJ A;  2Y56 A;  4X5T A;  3U8J A;  5AIN A;  5AFM B;  5AFK A;  3UU8 A;  5CO5 A;  2BJ0 A;  5JME A;  2Y54 A;  2PH9 A;  2C9T A;  3ZDH A;  4LMJ A;  3U8M A;  2WNL A;  3RQU A;  3P4W A;  4TWF A;  2XZ6 A;  2Y57 A;  4UXU A;  4ZR6 A;  4ZRU A;  4HFH A;  3RHW A;  3UU6 A;  2BYN A;  3TLS A;  5KZU A;  2XQ9 A;  4QAB A;  4TWD A;  3U8L A;  2XNV A;  4ZZC A;  4UM1 A;  5HEG A;  3UU3 A;  4QH1 A;  3GUA A;  2WNJ A;  3LSV A;  3WTO A;  2BYQ A;  2UZ6 A;  3SIO A;  2BG9 E;  3UU4 A;  3ZKR A;  2WNC A;  4HFE A;  5L47 A;  2XQ6 A;  2XNT A;  4ILC A;  4F8H A;  2YOE A;  2XQ8 A;  3WTH A;  5J5G A;  4AFH A;  4EZ1 A;  3U8N A;  2XQ7 A;  5L4H A;  3WTK A;  1UW6 A;  3WTN A;  4QAA A;  4HFC A;  3EAM A;  1UX2 A;  3TLV A;  2WZY A;  2XQ3 A;  3JAE A;  4IL4 A;  4Z91 A;  5HCJ A;  3PEO A;  4PIR A;  2W8G A;  4D01 A;  5HEU A;  4ZZB A;  3TLW A;  4HQP A;  2BG9 A;  3EI0 A;  3P50 A;  5L4E A; 
#chains in the Genus database with same CATH homology
 3U8K A;  4IRE A;  4QAC A;  3RQW A;  4Z90 A;  2XQA A;  4AFT A;  2Y7Y A;  4ZJS A;  3SQ6 A;  5AFH A;  4ILB A;  3UUB A;  5BRX A;  4ALX A;  4HFB A;  5J5H A;  4AFG A;  4TNV A;  5LG3 A;  3C84 A;  5HCM A;  2BYP A;  4NZB A;  3TLT A;  3UU5 A;  3JAF A;  4TWH A;  4A98 A;  5AFM A;  5AFL A;  4A97 A;  2W8F A;  4COF A;  2BR7 A;  2WN9 A;  4HFI A;  3WTM A;  1UV6 A;  4ZJT A;  2XYT A;  4BQT A;  5BW2 A;  4XHE A;  3SH1 A;  2X00 A;  5J5I A;  2X00 D;  4LMK A;  5SYO A;  3EHZ A;  5J5F A;  5TVC A;  5AFN A;  3ZDG A;  4ILA A;  2YME A;  4HFD A;  5HEO A;  1I9B A;  2XNU A;  4QH5 A;  4ZK1 A;  4UM3 A;  2Y58 A;  4NPP A;  3WTL A;  4UY2 A;  3SQ9 A;  3WIP A;  2BYS A;  5HEJ A;  4BFQ A;  3RI5 A;  5LXB A;  2YMD A;  3IGQ A;  5KE4 A;  2XQ5 A;  4ZK4 A;  2BYR A;  4FRR A;  2QC1 B;  4UM3 S;  4B5D A;  2XYS A;  4XK9 A;  2YN6 A;  3WTI A;  5CFB A;  2BG9 B;  5J0Z A;  3UQ4 A;  3TLU A;  3JAD A;  5IUX A;  4TNW A;  4QH4 A;  4WV9 A;  3UQ7 A;  2XQ4 A;  3C79 A;  2BG9 C;  4LML A;  4DBM A;  4IL9 A;  5BP0 A;  2YKS A;  2ZJU A;  2ZJV A;  3RIA A;  4UM3 P;  3T4M A;  5FJV A;  2BR8 A;  2VL0 A;  2XZ5 A;  2PGZ A;  3PMZ A;  3RIF A;  5AFJ A;  5HEH A;  3WTJ A;  2Y56 A;  4X5T A;  3U8J A;  5AIN A;  5AFM B;  5AFK A;  3UU8 A;  5CO5 A;  2BJ0 A;  5JME A;  2Y54 A;  2PH9 A;  2C9T A;  3ZDH A;  4LMJ A;  3U8M A;  2WNL A;  3RQU A;  3P4W A;  4TWF A;  2XZ6 A;  2Y57 A;  4UXU A;  4ZR6 A;  4ZRU A;  4HFH A;  3RHW A;  3UU6 A;  2BYN A;  3TLS A;  5KZU A;  2XQ9 A;  4QAB A;  4TWD A;  3U8L A;  2XNV A;  4ZZC A;  4UM1 A;  5HEG A;  3UU3 A;  4QH1 A;  3GUA A;  2WNJ A;  3LSV A;  3WTO A;  2BYQ A;  2UZ6 A;  3SIO A;  2BG9 E;  3UU4 A;  3ZKR A;  2WNC A;  4HFE A;  5L47 A;  2XQ6 A;  2XNT A;  4ILC A;  4F8H A;  2YOE A;  2XQ8 A;  3WTH A;  5J5G A;  4AFH A;  4EZ1 A;  3U8N A;  2XQ7 A;  5L4H A;  3WTK A;  1UW6 A;  3WTN A;  4QAA A;  4HFC A;  3EAM A;  1UX2 A;  3TLV A;  2WZY A;  2XQ3 A;  3JAE A;  4IL4 A;  4Z91 A;  5HCJ A;  3PEO A;  4PIR A;  2W8G A;  4D01 A;  5HEU A;  4ZZB A;  3TLW A;  4HQP A;  2BG9 A;  3EI0 A;  3P50 A;  5L4E A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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