2W8FA

Aplysia californica achbp bound to in silico compound 31
Total Genus 48
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
48
sequence length
205
structure length
205
Chain Sequence
QANLMRLKSDLFNRSPMYPGPTKDDPLTVTLGFTLQDIVKVDSSTNEVDLVYYEQQRWKLNSLMWDPNEYGNITDFRTSAADIWTPDITAYSSTRPVQVLSPQIAVVTHDGSVMFIPAQRLSFMCDPTGVDSEEGVTCAVKFGSWVYSGFEIDLKTDTDQVDLSSYYASSKYEILSATQTRQVQHYSCCPEPYIDVNLVVKFRER
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Receptor
molecule keywords SOLUBLE ACETYLCHOLINE RECEPTOR
publication title Use of Acetylcholine Binding Protein in the Search for Novel Alpha7 Nicotinic Receptor Ligands. In Silico Docking, Pharmacological Screening, and X- Ray Analysis.
pubmed doi rcsb
total genus 48
structure length 205
sequence length 205
chains with identical sequence B, C, D, E, F, G, H, I, J
ec nomenclature
pdb deposition date 2009-01-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02931 Neur_chan_LBD Neurotransmitter-gated ion-channel ligand binding domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.70.170.10 Mainly Beta Distorted Sandwich Acetylcholine Binding Protein; Chain: A, Neurotransmitter-gated ion-channel ligand-binding domain 2w8fA00
4FRRA 2QC1B 3JADA 4WV9A 2XZ5A 4HFIA 4X5TA 3WTNA 2XYTA 2WNCA 2XZ6A 3RQWA 2BG9E 2YMDA 5FJVA 2XNTA 2YKSA 4QACA 4IREA 4QABA 4ZZCA 2Y58A 2BG9A 2W8GA 3UUBA 4HQPA 2ZJVA 2X00D 2XQ5A 5AFHA 4HFBA 4D01A 2BR7A 5KZUA 3RIFA 5J5GA 5J0ZA 5IUXA 3WTHA 4PIRA 3UU3A 4EZ1A 4UM3P 2ZJUA 4UXUA 3RIAA 2BYPA 3U8NA 3TLUA 4TWFA 3RQUA 3WTIA 2VL0A 5HCJA 2XQ7A 2Y56A 4LMJA 5J5FA 4AFHA 4ZJSA 3ZKRA 2YOEA 4TWDA 4TWHA 3UQ4A 3GUAA 3WTMA 4A98A 3WTKA 2XQ3A 2BYNA 4UM3A 3JAEA 5JMEA 3TLVA 4ZK4A 2XQ4A 2W8FA 3WTJA 5BP0A 5KE4A 5AINA 3EHZA 3SQ9A 3U8JA 3U8LA 3WTOA 4DBMA 5CO5A 4BFQA 2WN9A 3SQ6A 2WNLA 4HFHA 4ZZBA 4UY2A 3P4WA 2WNJA 1I9BA 2XNUA 4TNVA 5HEUA 4ZK1A 2BYSA 3RHWA 2XQAA 3UU8A 3C79A 3UU4A 5L47A 2C9TA 5TVCA 2XQ9A 3SIOA 4UM1A 3PMZA 3EAMA 4AFTA 4XK9A 5BW2A 1UW6A 4F8HA 4TNWA 3IGQA 4QH4A 4Z90A 3UU6A 4ALXA 4Z91A 5LXBA 2Y57A 4B5DA 3ZDHA 4XHEA 4HFEA 5HEOA 4IL4A 5AFMB 5AFLA 5AFNA 4LMLA 3TLSA 4AFGA 4ZR6A 2BG9C 5L4HA 3LSVA 2PH9A 3TLTA 2XQ8A 5HEHA 4HFCA 5CFBA 4ILAA 4ZJTA 3JAFA 5L4EA 5AFKA 4QH1A 4NZBA 2Y7YA 2XNVA 2WZYA 2XYSA 2Y54A 2PGZA 3SH1A 1UV6A 3U8MA 5HEJA 5HEGA 5J5IA 4ZRUA 2YMEA 3WTLA 3PEOA 3RI5A 5AFMA 2BR8A 3C84A 5HCMA 3TLWA 5BRXA 2YN6A 4UM3S 2UZ6A 5SYOA 3T4MA 5J5HA 5LG3A 4QH5A 4IL9A 2BYRA 4BQTA 4LMKA 3UU5A 3WIPA 4QAAA 1UX2A 5AFJA 4A97A 3P50A 4COFA 2X00A 2BJ0A 3ZDGA 2BYQA 2XQ6A 4HFDA 3UQ7A 4NPPA 3EI0A 4ILBA 3U8KA 2BG9B 4ILCA
chains in the Genus database with same CATH superfamily
4FRRA 2QC1B 3JADA 4WV9A 2XZ5A 4HFIA 4X5TA 3WTNA 2XYTA 2WNCA 2XZ6A 3RQWA 2BG9E 2YMDA 5FJVA 2XNTA 2YKSA 4QACA 4IREA 4QABA 4ZZCA 2Y58A 2BG9A 2W8GA 3UUBA 4HQPA 2ZJVA 2X00D 2XQ5A 5AFHA 4HFBA 4D01A 2BR7A 5KZUA 3RIFA 5J5GA 5J0ZA 5IUXA 3WTHA 4PIRA 3UU3A 4EZ1A 4UM3P 2ZJUA 4UXUA 3RIAA 2BYPA 3U8NA 3TLUA 4TWFA 3RQUA 3WTIA 2VL0A 5HCJA 2XQ7A 2Y56A 4LMJA 5J5FA 4AFHA 4ZJSA 3ZKRA 2YOEA 4TWDA 4TWHA 3UQ4A 3GUAA 3WTMA 4A98A 3WTKA 2XQ3A 2BYNA 4UM3A 3JAEA 5JMEA 3TLVA 4ZK4A 2XQ4A 2W8FA 3WTJA 5BP0A 5KE4A 5AINA 3EHZA 3SQ9A 3U8JA 3U8LA 3WTOA 4DBMA 5CO5A 4BFQA 2WN9A 3SQ6A 2WNLA 4HFHA 4ZZBA 4UY2A 3P4WA 2WNJA 1I9BA 2XNUA 4TNVA 5HEUA 4ZK1A 2BYSA 3RHWA 2XQAA 3UU8A 3C79A 3UU4A 5L47A 2C9TA 5TVCA 2XQ9A 3SIOA 4UM1A 3PMZA 3EAMA 4AFTA 4XK9A 5BW2A 1UW6A 4F8HA 4TNWA 3IGQA 4QH4A 4Z90A 3UU6A 4ALXA 4Z91A 5LXBA 2Y57A 4B5DA 3ZDHA 4XHEA 4HFEA 5HEOA 4IL4A 5AFMB 5AFLA 5AFNA 4LMLA 3TLSA 4AFGA 4ZR6A 2BG9C 5L4HA 3LSVA 2PH9A 3TLTA 2XQ8A 5HEHA 4HFCA 5CFBA 4ILAA 4ZJTA 3JAFA 5L4EA 5AFKA 4QH1A 4NZBA 2Y7YA 2XNVA 2WZYA 2XYSA 2Y54A 2PGZA 3SH1A 1UV6A 3U8MA 5HEJA 5HEGA 5J5IA 4ZRUA 2YMEA 3WTLA 3PEOA 3RI5A 5AFMA 2BR8A 3C84A 5HCMA 3TLWA 5BRXA 2YN6A 4UM3S 2UZ6A 5SYOA 3T4MA 5J5HA 5LG3A 4QH5A 4IL9A 2BYRA 4BQTA 4LMKA 3UU5A 3WIPA 4QAAA 1UX2A 5AFJA 4A97A 3P50A 4COFA 2X00A 2BJ0A 3ZDGA 2BYQA 2XQ6A 4HFDA 3UQ7A 4NPPA 3EI0A 4ILBA 3U8KA 2BG9B 4ILCA
chains in the Genus database with same CATH topology
4FRRA 2QC1B 3JADA 4WV9A 2XZ5A 4HFIA 4X5TA 3WTNA 2XYTA 2WNCA 2XZ6A 3RQWA 2BG9E 2YMDA 5FJVA 2XNTA 2YKSA 4QACA 4IREA 4QABA 4ZZCA 2Y58A 2BG9A 2W8GA 3UUBA 4HQPA 2ZJVA 2X00D 2XQ5A 5AFHA 4HFBA 4D01A 2BR7A 5KZUA 3RIFA 5J5GA 5J0ZA 5IUXA 3WTHA 4PIRA 3UU3A 4EZ1A 4UM3P 2ZJUA 4UXUA 3RIAA 2BYPA 3U8NA 3TLUA 4TWFA 3RQUA 3WTIA 2VL0A 5HCJA 2XQ7A 2Y56A 4LMJA 5J5FA 4AFHA 4ZJSA 3ZKRA 2YOEA 4TWDA 4TWHA 3UQ4A 3GUAA 3WTMA 4A98A 3WTKA 2XQ3A 2BYNA 4UM3A 3JAEA 5JMEA 3TLVA 4ZK4A 2XQ4A 2W8FA 3WTJA 5BP0A 5KE4A 5AINA 3EHZA 3SQ9A 3U8JA 3U8LA 3WTOA 4DBMA 5CO5A 4BFQA 2WN9A 3SQ6A 2WNLA 4HFHA 4ZZBA 4UY2A 3P4WA 2WNJA 1I9BA 2XNUA 4TNVA 5HEUA 4ZK1A 2BYSA 3RHWA 2XQAA 3UU8A 3C79A 3UU4A 5L47A 2C9TA 5TVCA 2XQ9A 3SIOA 4UM1A 3PMZA 3EAMA 4AFTA 4XK9A 5BW2A 1UW6A 4F8HA 4TNWA 3IGQA 4QH4A 4Z90A 3UU6A 4ALXA 4Z91A 5LXBA 2Y57A 4B5DA 3ZDHA 4XHEA 4HFEA 5HEOA 4IL4A 5AFMB 5AFLA 5AFNA 4LMLA 3TLSA 4AFGA 4ZR6A 2BG9C 5L4HA 3LSVA 2PH9A 3TLTA 2XQ8A 5HEHA 4HFCA 5CFBA 4ILAA 4ZJTA 3JAFA 5L4EA 5AFKA 4QH1A 4NZBA 2Y7YA 2XNVA 2WZYA 2XYSA 2Y54A 2PGZA 3SH1A 1UV6A 3U8MA 5HEJA 5HEGA 5J5IA 4ZRUA 2YMEA 3WTLA 3PEOA 3RI5A 5AFMA 2BR8A 3C84A 5HCMA 3TLWA 5BRXA 2YN6A 4UM3S 2UZ6A 5SYOA 3T4MA 5J5HA 5LG3A 4QH5A 4IL9A 2BYRA 4BQTA 4LMKA 3UU5A 3WIPA 4QAAA 1UX2A 5AFJA 4A97A 3P50A 4COFA 2X00A 2BJ0A 3ZDGA 2BYQA 2XQ6A 4HFDA 3UQ7A 4NPPA 3EI0A 4ILBA 3U8KA 2BG9B 4ILCA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4FRR A;  2QC1 B;  3JAD A;  4WV9 A;  2XZ5 A;  4HFI A;  4X5T A;  3WTN A;  2XYT A;  2WNC A;  2XZ6 A;  3RQW A;  2BG9 E;  2YMD A;  5FJV A;  2XNT A;  2YKS A;  4QAC A;  4IRE A;  4QAB A;  4ZZC A;  2Y58 A;  2BG9 A;  2W8G A;  3UUB A;  4HQP A;  2ZJV A;  2X00 D;  2XQ5 A;  5AFH A;  4HFB A;  4D01 A;  2BR7 A;  5KZU A;  3RIF A;  5J5G A;  5J0Z A;  5IUX A;  3WTH A;  4PIR A;  3UU3 A;  4EZ1 A;  4UM3 P;  2ZJU A;  4UXU A;  3RIA A;  2BYP A;  3U8N A;  3TLU A;  4TWF A;  3RQU A;  3WTI A;  2VL0 A;  5HCJ A;  2XQ7 A;  2Y56 A;  4LMJ A;  5J5F A;  4AFH A;  4ZJS A;  3ZKR A;  2YOE A;  4TWD A;  4TWH A;  3UQ4 A;  3GUA A;  3WTM A;  4A98 A;  3WTK A;  2XQ3 A;  2BYN A;  4UM3 A;  3JAE A;  5JME A;  3TLV A;  4ZK4 A;  2XQ4 A;  2W8F A;  3WTJ A;  5BP0 A;  5KE4 A;  5AIN A;  3EHZ A;  3SQ9 A;  3U8J A;  3U8L A;  3WTO A;  4DBM A;  5CO5 A;  4BFQ A;  2WN9 A;  3SQ6 A;  2WNL A;  4HFH A;  4ZZB A;  4UY2 A;  3P4W A;  2WNJ A;  1I9B A;  2XNU A;  4TNV A;  5HEU A;  4ZK1 A;  2BYS A;  3RHW A;  2XQA A;  3UU8 A;  3C79 A;  3UU4 A;  5L47 A;  2C9T A;  5TVC A;  2XQ9 A;  3SIO A;  4UM1 A;  3PMZ A;  3EAM A;  4AFT A;  4XK9 A;  5BW2 A;  1UW6 A;  4F8H A;  4TNW A;  3IGQ A;  4QH4 A;  4Z90 A;  3UU6 A;  4ALX A;  4Z91 A;  5LXB A;  2Y57 A;  4B5D A;  3ZDH A;  4XHE A;  4HFE A;  5HEO A;  4IL4 A;  5AFM B;  5AFL A;  5AFN A;  4LML A;  3TLS A;  4AFG A;  4ZR6 A;  2BG9 C;  5L4H A;  3LSV A;  2PH9 A;  3TLT A;  2XQ8 A;  5HEH A;  4HFC A;  5CFB A;  4ILA A;  4ZJT A;  3JAF A;  5L4E A;  5AFK A;  4QH1 A;  4NZB A;  2Y7Y A;  2XNV A;  2WZY A;  2XYS A;  2Y54 A;  2PGZ A;  3SH1 A;  1UV6 A;  3U8M A;  5HEJ A;  5HEG A;  5J5I A;  4ZRU A;  2YME A;  3WTL A;  3PEO A;  3RI5 A;  5AFM A;  2BR8 A;  3C84 A;  5HCM A;  3TLW A;  5BRX A;  2YN6 A;  4UM3 S;  2UZ6 A;  5SYO A;  3T4M A;  5J5H A;  5LG3 A;  4QH5 A;  4IL9 A;  2BYR A;  4BQT A;  4LMK A;  3UU5 A;  3WIP A;  4QAA A;  1UX2 A;  5AFJ A;  4A97 A;  3P50 A;  4COF A;  2X00 A;  2BJ0 A;  3ZDG A;  2BYQ A;  2XQ6 A;  4HFD A;  3UQ7 A;  4NPP A;  3EI0 A;  4ILB A;  3U8K A;  2BG9 B;  4ILC A; 
#chains in the Genus database with same CATH topology
 4FRR A;  2QC1 B;  3JAD A;  4WV9 A;  2XZ5 A;  4HFI A;  4X5T A;  3WTN A;  2XYT A;  2WNC A;  2XZ6 A;  3RQW A;  2BG9 E;  2YMD A;  5FJV A;  2XNT A;  2YKS A;  4QAC A;  4IRE A;  4QAB A;  4ZZC A;  2Y58 A;  2BG9 A;  2W8G A;  3UUB A;  4HQP A;  2ZJV A;  2X00 D;  2XQ5 A;  5AFH A;  4HFB A;  4D01 A;  2BR7 A;  5KZU A;  3RIF A;  5J5G A;  5J0Z A;  5IUX A;  3WTH A;  4PIR A;  3UU3 A;  4EZ1 A;  4UM3 P;  2ZJU A;  4UXU A;  3RIA A;  2BYP A;  3U8N A;  3TLU A;  4TWF A;  3RQU A;  3WTI A;  2VL0 A;  5HCJ A;  2XQ7 A;  2Y56 A;  4LMJ A;  5J5F A;  4AFH A;  4ZJS A;  3ZKR A;  2YOE A;  4TWD A;  4TWH A;  3UQ4 A;  3GUA A;  3WTM A;  4A98 A;  3WTK A;  2XQ3 A;  2BYN A;  4UM3 A;  3JAE A;  5JME A;  3TLV A;  4ZK4 A;  2XQ4 A;  2W8F A;  3WTJ A;  5BP0 A;  5KE4 A;  5AIN A;  3EHZ A;  3SQ9 A;  3U8J A;  3U8L A;  3WTO A;  4DBM A;  5CO5 A;  4BFQ A;  2WN9 A;  3SQ6 A;  2WNL A;  4HFH A;  4ZZB A;  4UY2 A;  3P4W A;  2WNJ A;  1I9B A;  2XNU A;  4TNV A;  5HEU A;  4ZK1 A;  2BYS A;  3RHW A;  2XQA A;  3UU8 A;  3C79 A;  3UU4 A;  5L47 A;  2C9T A;  5TVC A;  2XQ9 A;  3SIO A;  4UM1 A;  3PMZ A;  3EAM A;  4AFT A;  4XK9 A;  5BW2 A;  1UW6 A;  4F8H A;  4TNW A;  3IGQ A;  4QH4 A;  4Z90 A;  3UU6 A;  4ALX A;  4Z91 A;  5LXB A;  2Y57 A;  4B5D A;  3ZDH A;  4XHE A;  4HFE A;  5HEO A;  4IL4 A;  5AFM B;  5AFL A;  5AFN A;  4LML A;  3TLS A;  4AFG A;  4ZR6 A;  2BG9 C;  5L4H A;  3LSV A;  2PH9 A;  3TLT A;  2XQ8 A;  5HEH A;  4HFC A;  5CFB A;  4ILA A;  4ZJT A;  3JAF A;  5L4E A;  5AFK A;  4QH1 A;  4NZB A;  2Y7Y A;  2XNV A;  2WZY A;  2XYS A;  2Y54 A;  2PGZ A;  3SH1 A;  1UV6 A;  3U8M A;  5HEJ A;  5HEG A;  5J5I A;  4ZRU A;  2YME A;  3WTL A;  3PEO A;  3RI5 A;  5AFM A;  2BR8 A;  3C84 A;  5HCM A;  3TLW A;  5BRX A;  2YN6 A;  4UM3 S;  2UZ6 A;  5SYO A;  3T4M A;  5J5H A;  5LG3 A;  4QH5 A;  4IL9 A;  2BYR A;  4BQT A;  4LMK A;  3UU5 A;  3WIP A;  4QAA A;  1UX2 A;  5AFJ A;  4A97 A;  3P50 A;  4COF A;  2X00 A;  2BJ0 A;  3ZDG A;  2BYQ A;  2XQ6 A;  4HFD A;  3UQ7 A;  4NPP A;  3EI0 A;  4ILB A;  3U8K A;  2BG9 B;  4ILC A; 
#chains in the Genus database with same CATH homology
 4FRR A;  2QC1 B;  3JAD A;  4WV9 A;  2XZ5 A;  4HFI A;  4X5T A;  3WTN A;  2XYT A;  2WNC A;  2XZ6 A;  3RQW A;  2BG9 E;  2YMD A;  5FJV A;  2XNT A;  2YKS A;  4QAC A;  4IRE A;  4QAB A;  4ZZC A;  2Y58 A;  2BG9 A;  2W8G A;  3UUB A;  4HQP A;  2ZJV A;  2X00 D;  2XQ5 A;  5AFH A;  4HFB A;  4D01 A;  2BR7 A;  5KZU A;  3RIF A;  5J5G A;  5J0Z A;  5IUX A;  3WTH A;  4PIR A;  3UU3 A;  4EZ1 A;  4UM3 P;  2ZJU A;  4UXU A;  3RIA A;  2BYP A;  3U8N A;  3TLU A;  4TWF A;  3RQU A;  3WTI A;  2VL0 A;  5HCJ A;  2XQ7 A;  2Y56 A;  4LMJ A;  5J5F A;  4AFH A;  4ZJS A;  3ZKR A;  2YOE A;  4TWD A;  4TWH A;  3UQ4 A;  3GUA A;  3WTM A;  4A98 A;  3WTK A;  2XQ3 A;  2BYN A;  4UM3 A;  3JAE A;  5JME A;  3TLV A;  4ZK4 A;  2XQ4 A;  2W8F A;  3WTJ A;  5BP0 A;  5KE4 A;  5AIN A;  3EHZ A;  3SQ9 A;  3U8J A;  3U8L A;  3WTO A;  4DBM A;  5CO5 A;  4BFQ A;  2WN9 A;  3SQ6 A;  2WNL A;  4HFH A;  4ZZB A;  4UY2 A;  3P4W A;  2WNJ A;  1I9B A;  2XNU A;  4TNV A;  5HEU A;  4ZK1 A;  2BYS A;  3RHW A;  2XQA A;  3UU8 A;  3C79 A;  3UU4 A;  5L47 A;  2C9T A;  5TVC A;  2XQ9 A;  3SIO A;  4UM1 A;  3PMZ A;  3EAM A;  4AFT A;  4XK9 A;  5BW2 A;  1UW6 A;  4F8H A;  4TNW A;  3IGQ A;  4QH4 A;  4Z90 A;  3UU6 A;  4ALX A;  4Z91 A;  5LXB A;  2Y57 A;  4B5D A;  3ZDH A;  4XHE A;  4HFE A;  5HEO A;  4IL4 A;  5AFM B;  5AFL A;  5AFN A;  4LML A;  3TLS A;  4AFG A;  4ZR6 A;  2BG9 C;  5L4H A;  3LSV A;  2PH9 A;  3TLT A;  2XQ8 A;  5HEH A;  4HFC A;  5CFB A;  4ILA A;  4ZJT A;  3JAF A;  5L4E A;  5AFK A;  4QH1 A;  4NZB A;  2Y7Y A;  2XNV A;  2WZY A;  2XYS A;  2Y54 A;  2PGZ A;  3SH1 A;  1UV6 A;  3U8M A;  5HEJ A;  5HEG A;  5J5I A;  4ZRU A;  2YME A;  3WTL A;  3PEO A;  3RI5 A;  5AFM A;  2BR8 A;  3C84 A;  5HCM A;  3TLW A;  5BRX A;  2YN6 A;  4UM3 S;  2UZ6 A;  5SYO A;  3T4M A;  5J5H A;  5LG3 A;  4QH5 A;  4IL9 A;  2BYR A;  4BQT A;  4LMK A;  3UU5 A;  3WIP A;  4QAA A;  1UX2 A;  5AFJ A;  4A97 A;  3P50 A;  4COF A;  2X00 A;  2BJ0 A;  3ZDG A;  2BYQ A;  2XQ6 A;  4HFD A;  3UQ7 A;  4NPP A;  3EI0 A;  4ILB A;  3U8K A;  2BG9 B;  4ILC A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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