2C9TA

Crystal structure of acetylcholine binding protein (achbp) from aplysia californica in complex with alpha-conotoxin imi
Total Genus 49
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
49
sequence length
205
structure length
205
Chain Sequence
QANLMRLKSDLFNRSPMYPGPTKDDPLTVTLGFTLQDIVKVDSSTNEVDLVYYEQQRWKLNSLMWDPNEYGNITDFRTSAADIWTPDITAYSSTRPVQVLSPQIAVVTHDGSVMFIPAQRLSFMCDPTGVDSEEGVTCAVKFGSWVYSGFEIDLKTDTDQVDLSSYYASSKYEILSATQTRQVQHYSCCPEPYIDVNLVVKFRER
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Receptor/toxin
publication title Structural Determinants of Selective {Alpha}-Conotoxin Binding to a Nicotinic Acetylcholine Receptor Homolog Achbp.
pubmed doi rcsb
molecule keywords SOLUBLE ACETYLCHOLINE RECEPTOR
total genus 49
structure length 205
sequence length 205
chains with identical sequence B, C, D, E, F, G, H, I, J
ec nomenclature
pdb deposition date 2005-12-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02931 Neur_chan_LBD Neurotransmitter-gated ion-channel ligand binding domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.70.170.10 Mainly Beta Distorted Sandwich Acetylcholine Binding Protein; Chain: A, Neurotransmitter-gated ion-channel ligand-binding domain 2c9tA00
3U8NA 4UM1A 3RIFA 4LMKA 3UU6A 3SH1A 4QH4A 5AFKA 5BRXA 5IUXA 5AFMB 2YMEA 2XNUA 5LXBA 3TLSA 5AFMA 2BR8A 3SQ6A 5HEGA 4Z90A 3WTLA 3ZDHA 4QACA 2W8GA 3JAEA 2WNCA 4QH1A 3RHWA 2BYPA 4IREA 4WV9A 5HEHA 3TLWA 3WTKA 5AFNA 2XQAA 5CO5A 5J5HA 2PH9A 1UV6A 3RIAA 4HFHA 2XNTA 4ZK1A 5L4EA 2BYRA 3TLTA 3WTHA 3P50A 2XQ4A 5AFHA 4ZJSA 4UXUA 3UUBA 2X00D 4TWDA 2ZJVA 3GUAA 2C9TA 2XYSA 1UX2A 4ALXA 2BR7A 4HFDA 3IGQA 5AFLA 4ZZCA 4ZK4A 2PGZA 2BYNA 3JAFA 4UM3S 3P4WA 5TVCA 4UM3A 5KZUA 2WNLA 2W8FA 3ZDGA 3UU5A 2XNVA 5HCJA 5AINA 4ZZBA 4XHEA 2WN9A 3WIPA 2XQ7A 4UM3P 5HEJA 4AFTA 5HEUA 3RQUA 3T4MA 2XZ6A 4ZR6A 4AFHA 5SYOA 2BG9C 5JMEA 5J5FA 3C84A 3EI0A 3SIOA 2Y57A 2VL0A 3TLUA 5AFJA 3UU4A 3U8JA 5KE4A 5HCMA 2BYQA 2XQ3A 4LMJA 2BJ0A 4COFA 4HQPA 4QABA 5J5GA 5J5IA 3UQ7A 4LMLA 2Y56A 5BP0A 3JADA 1UW6A 4AFGA 3U8KA 2BYSA 4HFEA 5L4HA 5FJVA 2ZJUA 5HEOA 3WTOA 3EAMA 3U8MA 4NPPA 4D01A 2BG9B 3C79A 3RI5A 4A97A 3WTIA 2BG9A 4B5DA 2UZ6A 2XQ5A 3EHZA 4TWFA 5CFBA 4A98A 4ILCA 3PEOA 4HFIA 3TLVA 4IL4A 2XZ5A 3UU3A 4ILAA 4PIRA 4TWHA 2Y54A 4QH5A 1I9BA 2XYTA 4X5TA 4TNWA 4HFCA 5LG3A 4XK9A 4BFQA 2WZYA 3SQ9A 2X00A 2Y7YA 4DBMA 4UY2A 4TNVA 4Z91A 5L47A 4F8HA 3UQ4A 3ZKRA 2XQ6A 2XQ8A 5J0ZA 2Y58A 2XQ9A 3PMZA 4ILBA 5BW2A 2YMDA 3WTJA 3U8LA 4HFBA 2QC1B 3WTMA 4ZJTA 4BQTA 4QAAA 4FRRA 3RQWA 4ZRUA 2WNJA 3WTNA 4EZ1A 2YN6A 4IL9A 2BG9E 2YOEA 3LSVA 2YKSA 3UU8A 4NZBA
chains in the Genus database with same CATH superfamily
3U8NA 4UM1A 3RIFA 4LMKA 3UU6A 3SH1A 4QH4A 5AFKA 5BRXA 5IUXA 5AFMB 2YMEA 2XNUA 5LXBA 3TLSA 5AFMA 2BR8A 3SQ6A 5HEGA 4Z90A 3WTLA 3ZDHA 4QACA 2W8GA 3JAEA 2WNCA 4QH1A 3RHWA 2BYPA 4IREA 4WV9A 5HEHA 3TLWA 3WTKA 5AFNA 2XQAA 5CO5A 5J5HA 2PH9A 1UV6A 3RIAA 4HFHA 2XNTA 4ZK1A 5L4EA 2BYRA 3TLTA 3WTHA 3P50A 2XQ4A 5AFHA 4ZJSA 4UXUA 3UUBA 2X00D 4TWDA 2ZJVA 3GUAA 2C9TA 2XYSA 1UX2A 4ALXA 2BR7A 4HFDA 3IGQA 5AFLA 4ZZCA 4ZK4A 2PGZA 2BYNA 3JAFA 4UM3S 3P4WA 5TVCA 4UM3A 5KZUA 2WNLA 2W8FA 3ZDGA 3UU5A 2XNVA 5HCJA 5AINA 4ZZBA 4XHEA 2WN9A 3WIPA 2XQ7A 4UM3P 5HEJA 4AFTA 5HEUA 3RQUA 3T4MA 2XZ6A 4ZR6A 4AFHA 5SYOA 2BG9C 5JMEA 5J5FA 3C84A 3EI0A 3SIOA 2Y57A 2VL0A 3TLUA 5AFJA 3UU4A 3U8JA 5KE4A 5HCMA 2BYQA 2XQ3A 4LMJA 2BJ0A 4COFA 4HQPA 4QABA 5J5GA 5J5IA 3UQ7A 4LMLA 2Y56A 5BP0A 3JADA 1UW6A 4AFGA 3U8KA 2BYSA 4HFEA 5L4HA 5FJVA 2ZJUA 5HEOA 3WTOA 3EAMA 3U8MA 4NPPA 4D01A 2BG9B 3C79A 3RI5A 4A97A 3WTIA 2BG9A 4B5DA 2UZ6A 2XQ5A 3EHZA 4TWFA 5CFBA 4A98A 4ILCA 3PEOA 4HFIA 3TLVA 4IL4A 2XZ5A 3UU3A 4ILAA 4PIRA 4TWHA 2Y54A 4QH5A 1I9BA 2XYTA 4X5TA 4TNWA 4HFCA 5LG3A 4XK9A 4BFQA 2WZYA 3SQ9A 2X00A 2Y7YA 4DBMA 4UY2A 4TNVA 4Z91A 5L47A 4F8HA 3UQ4A 3ZKRA 2XQ6A 2XQ8A 5J0ZA 2Y58A 2XQ9A 3PMZA 4ILBA 5BW2A 2YMDA 3WTJA 3U8LA 4HFBA 2QC1B 3WTMA 4ZJTA 4BQTA 4QAAA 4FRRA 3RQWA 4ZRUA 2WNJA 3WTNA 4EZ1A 2YN6A 4IL9A 2BG9E 2YOEA 3LSVA 2YKSA 3UU8A 4NZBA
chains in the Genus database with same CATH topology
3U8NA 4UM1A 3RIFA 4LMKA 3UU6A 3SH1A 4QH4A 5AFKA 5BRXA 5IUXA 5AFMB 2YMEA 2XNUA 5LXBA 3TLSA 5AFMA 2BR8A 3SQ6A 5HEGA 4Z90A 3WTLA 3ZDHA 4QACA 2W8GA 3JAEA 2WNCA 4QH1A 3RHWA 2BYPA 4IREA 4WV9A 5HEHA 3TLWA 3WTKA 5AFNA 2XQAA 5CO5A 5J5HA 2PH9A 1UV6A 3RIAA 4HFHA 2XNTA 4ZK1A 5L4EA 2BYRA 3TLTA 3WTHA 3P50A 2XQ4A 5AFHA 4ZJSA 4UXUA 3UUBA 2X00D 4TWDA 2ZJVA 3GUAA 2C9TA 2XYSA 1UX2A 4ALXA 2BR7A 4HFDA 3IGQA 5AFLA 4ZZCA 4ZK4A 2PGZA 2BYNA 3JAFA 4UM3S 3P4WA 5TVCA 4UM3A 5KZUA 2WNLA 2W8FA 3ZDGA 3UU5A 2XNVA 5HCJA 5AINA 4ZZBA 4XHEA 2WN9A 3WIPA 2XQ7A 4UM3P 5HEJA 4AFTA 5HEUA 3RQUA 3T4MA 2XZ6A 4ZR6A 4AFHA 5SYOA 2BG9C 5JMEA 5J5FA 3C84A 3EI0A 3SIOA 2Y57A 2VL0A 3TLUA 5AFJA 3UU4A 3U8JA 5KE4A 5HCMA 2BYQA 2XQ3A 4LMJA 2BJ0A 4COFA 4HQPA 4QABA 5J5GA 5J5IA 3UQ7A 4LMLA 2Y56A 5BP0A 3JADA 1UW6A 4AFGA 3U8KA 2BYSA 4HFEA 5L4HA 5FJVA 2ZJUA 5HEOA 3WTOA 3EAMA 3U8MA 4NPPA 4D01A 2BG9B 3C79A 3RI5A 4A97A 3WTIA 2BG9A 4B5DA 2UZ6A 2XQ5A 3EHZA 4TWFA 5CFBA 4A98A 4ILCA 3PEOA 4HFIA 3TLVA 4IL4A 2XZ5A 3UU3A 4ILAA 4PIRA 4TWHA 2Y54A 4QH5A 1I9BA 2XYTA 4X5TA 4TNWA 4HFCA 5LG3A 4XK9A 4BFQA 2WZYA 3SQ9A 2X00A 2Y7YA 4DBMA 4UY2A 4TNVA 4Z91A 5L47A 4F8HA 3UQ4A 3ZKRA 2XQ6A 2XQ8A 5J0ZA 2Y58A 2XQ9A 3PMZA 4ILBA 5BW2A 2YMDA 3WTJA 3U8LA 4HFBA 2QC1B 3WTMA 4ZJTA 4BQTA 4QAAA 4FRRA 3RQWA 4ZRUA 2WNJA 3WTNA 4EZ1A 2YN6A 4IL9A 2BG9E 2YOEA 3LSVA 2YKSA 3UU8A 4NZBA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3U8N A;  4UM1 A;  3RIF A;  4LMK A;  3UU6 A;  3SH1 A;  4QH4 A;  5AFK A;  5BRX A;  5IUX A;  5AFM B;  2YME A;  2XNU A;  5LXB A;  3TLS A;  5AFM A;  2BR8 A;  3SQ6 A;  5HEG A;  4Z90 A;  3WTL A;  3ZDH A;  4QAC A;  2W8G A;  3JAE A;  2WNC A;  4QH1 A;  3RHW A;  2BYP A;  4IRE A;  4WV9 A;  5HEH A;  3TLW A;  3WTK A;  5AFN A;  2XQA A;  5CO5 A;  5J5H A;  2PH9 A;  1UV6 A;  3RIA A;  4HFH A;  2XNT A;  4ZK1 A;  5L4E A;  2BYR A;  3TLT A;  3WTH A;  3P50 A;  2XQ4 A;  5AFH A;  4ZJS A;  4UXU A;  3UUB A;  2X00 D;  4TWD A;  2ZJV A;  3GUA A;  2C9T A;  2XYS A;  1UX2 A;  4ALX A;  2BR7 A;  4HFD A;  3IGQ A;  5AFL A;  4ZZC A;  4ZK4 A;  2PGZ A;  2BYN A;  3JAF A;  4UM3 S;  3P4W A;  5TVC A;  4UM3 A;  5KZU A;  2WNL A;  2W8F A;  3ZDG A;  3UU5 A;  2XNV A;  5HCJ A;  5AIN A;  4ZZB A;  4XHE A;  2WN9 A;  3WIP A;  2XQ7 A;  4UM3 P;  5HEJ A;  4AFT A;  5HEU A;  3RQU A;  3T4M A;  2XZ6 A;  4ZR6 A;  4AFH A;  5SYO A;  2BG9 C;  5JME A;  5J5F A;  3C84 A;  3EI0 A;  3SIO A;  2Y57 A;  2VL0 A;  3TLU A;  5AFJ A;  3UU4 A;  3U8J A;  5KE4 A;  5HCM A;  2BYQ A;  2XQ3 A;  4LMJ A;  2BJ0 A;  4COF A;  4HQP A;  4QAB A;  5J5G A;  5J5I A;  3UQ7 A;  4LML A;  2Y56 A;  5BP0 A;  3JAD A;  1UW6 A;  4AFG A;  3U8K A;  2BYS A;  4HFE A;  5L4H A;  5FJV A;  2ZJU A;  5HEO A;  3WTO A;  3EAM A;  3U8M A;  4NPP A;  4D01 A;  2BG9 B;  3C79 A;  3RI5 A;  4A97 A;  3WTI A;  2BG9 A;  4B5D A;  2UZ6 A;  2XQ5 A;  3EHZ A;  4TWF A;  5CFB A;  4A98 A;  4ILC A;  3PEO A;  4HFI A;  3TLV A;  4IL4 A;  2XZ5 A;  3UU3 A;  4ILA A;  4PIR A;  4TWH A;  2Y54 A;  4QH5 A;  1I9B A;  2XYT A;  4X5T A;  4TNW A;  4HFC A;  5LG3 A;  4XK9 A;  4BFQ A;  2WZY A;  3SQ9 A;  2X00 A;  2Y7Y A;  4DBM A;  4UY2 A;  4TNV A;  4Z91 A;  5L47 A;  4F8H A;  3UQ4 A;  3ZKR A;  2XQ6 A;  2XQ8 A;  5J0Z A;  2Y58 A;  2XQ9 A;  3PMZ A;  4ILB A;  5BW2 A;  2YMD A;  3WTJ A;  3U8L A;  4HFB A;  2QC1 B;  3WTM A;  4ZJT A;  4BQT A;  4QAA A;  4FRR A;  3RQW A;  4ZRU A;  2WNJ A;  3WTN A;  4EZ1 A;  2YN6 A;  4IL9 A;  2BG9 E;  2YOE A;  3LSV A;  2YKS A;  3UU8 A;  4NZB A; 
#chains in the Genus database with same CATH topology
 3U8N A;  4UM1 A;  3RIF A;  4LMK A;  3UU6 A;  3SH1 A;  4QH4 A;  5AFK A;  5BRX A;  5IUX A;  5AFM B;  2YME A;  2XNU A;  5LXB A;  3TLS A;  5AFM A;  2BR8 A;  3SQ6 A;  5HEG A;  4Z90 A;  3WTL A;  3ZDH A;  4QAC A;  2W8G A;  3JAE A;  2WNC A;  4QH1 A;  3RHW A;  2BYP A;  4IRE A;  4WV9 A;  5HEH A;  3TLW A;  3WTK A;  5AFN A;  2XQA A;  5CO5 A;  5J5H A;  2PH9 A;  1UV6 A;  3RIA A;  4HFH A;  2XNT A;  4ZK1 A;  5L4E A;  2BYR A;  3TLT A;  3WTH A;  3P50 A;  2XQ4 A;  5AFH A;  4ZJS A;  4UXU A;  3UUB A;  2X00 D;  4TWD A;  2ZJV A;  3GUA A;  2C9T A;  2XYS A;  1UX2 A;  4ALX A;  2BR7 A;  4HFD A;  3IGQ A;  5AFL A;  4ZZC A;  4ZK4 A;  2PGZ A;  2BYN A;  3JAF A;  4UM3 S;  3P4W A;  5TVC A;  4UM3 A;  5KZU A;  2WNL A;  2W8F A;  3ZDG A;  3UU5 A;  2XNV A;  5HCJ A;  5AIN A;  4ZZB A;  4XHE A;  2WN9 A;  3WIP A;  2XQ7 A;  4UM3 P;  5HEJ A;  4AFT A;  5HEU A;  3RQU A;  3T4M A;  2XZ6 A;  4ZR6 A;  4AFH A;  5SYO A;  2BG9 C;  5JME A;  5J5F A;  3C84 A;  3EI0 A;  3SIO A;  2Y57 A;  2VL0 A;  3TLU A;  5AFJ A;  3UU4 A;  3U8J A;  5KE4 A;  5HCM A;  2BYQ A;  2XQ3 A;  4LMJ A;  2BJ0 A;  4COF A;  4HQP A;  4QAB A;  5J5G A;  5J5I A;  3UQ7 A;  4LML A;  2Y56 A;  5BP0 A;  3JAD A;  1UW6 A;  4AFG A;  3U8K A;  2BYS A;  4HFE A;  5L4H A;  5FJV A;  2ZJU A;  5HEO A;  3WTO A;  3EAM A;  3U8M A;  4NPP A;  4D01 A;  2BG9 B;  3C79 A;  3RI5 A;  4A97 A;  3WTI A;  2BG9 A;  4B5D A;  2UZ6 A;  2XQ5 A;  3EHZ A;  4TWF A;  5CFB A;  4A98 A;  4ILC A;  3PEO A;  4HFI A;  3TLV A;  4IL4 A;  2XZ5 A;  3UU3 A;  4ILA A;  4PIR A;  4TWH A;  2Y54 A;  4QH5 A;  1I9B A;  2XYT A;  4X5T A;  4TNW A;  4HFC A;  5LG3 A;  4XK9 A;  4BFQ A;  2WZY A;  3SQ9 A;  2X00 A;  2Y7Y A;  4DBM A;  4UY2 A;  4TNV A;  4Z91 A;  5L47 A;  4F8H A;  3UQ4 A;  3ZKR A;  2XQ6 A;  2XQ8 A;  5J0Z A;  2Y58 A;  2XQ9 A;  3PMZ A;  4ILB A;  5BW2 A;  2YMD A;  3WTJ A;  3U8L A;  4HFB A;  2QC1 B;  3WTM A;  4ZJT A;  4BQT A;  4QAA A;  4FRR A;  3RQW A;  4ZRU A;  2WNJ A;  3WTN A;  4EZ1 A;  2YN6 A;  4IL9 A;  2BG9 E;  2YOE A;  3LSV A;  2YKS A;  3UU8 A;  4NZB A; 
#chains in the Genus database with same CATH homology
 3U8N A;  4UM1 A;  3RIF A;  4LMK A;  3UU6 A;  3SH1 A;  4QH4 A;  5AFK A;  5BRX A;  5IUX A;  5AFM B;  2YME A;  2XNU A;  5LXB A;  3TLS A;  5AFM A;  2BR8 A;  3SQ6 A;  5HEG A;  4Z90 A;  3WTL A;  3ZDH A;  4QAC A;  2W8G A;  3JAE A;  2WNC A;  4QH1 A;  3RHW A;  2BYP A;  4IRE A;  4WV9 A;  5HEH A;  3TLW A;  3WTK A;  5AFN A;  2XQA A;  5CO5 A;  5J5H A;  2PH9 A;  1UV6 A;  3RIA A;  4HFH A;  2XNT A;  4ZK1 A;  5L4E A;  2BYR A;  3TLT A;  3WTH A;  3P50 A;  2XQ4 A;  5AFH A;  4ZJS A;  4UXU A;  3UUB A;  2X00 D;  4TWD A;  2ZJV A;  3GUA A;  2C9T A;  2XYS A;  1UX2 A;  4ALX A;  2BR7 A;  4HFD A;  3IGQ A;  5AFL A;  4ZZC A;  4ZK4 A;  2PGZ A;  2BYN A;  3JAF A;  4UM3 S;  3P4W A;  5TVC A;  4UM3 A;  5KZU A;  2WNL A;  2W8F A;  3ZDG A;  3UU5 A;  2XNV A;  5HCJ A;  5AIN A;  4ZZB A;  4XHE A;  2WN9 A;  3WIP A;  2XQ7 A;  4UM3 P;  5HEJ A;  4AFT A;  5HEU A;  3RQU A;  3T4M A;  2XZ6 A;  4ZR6 A;  4AFH A;  5SYO A;  2BG9 C;  5JME A;  5J5F A;  3C84 A;  3EI0 A;  3SIO A;  2Y57 A;  2VL0 A;  3TLU A;  5AFJ A;  3UU4 A;  3U8J A;  5KE4 A;  5HCM A;  2BYQ A;  2XQ3 A;  4LMJ A;  2BJ0 A;  4COF A;  4HQP A;  4QAB A;  5J5G A;  5J5I A;  3UQ7 A;  4LML A;  2Y56 A;  5BP0 A;  3JAD A;  1UW6 A;  4AFG A;  3U8K A;  2BYS A;  4HFE A;  5L4H A;  5FJV A;  2ZJU A;  5HEO A;  3WTO A;  3EAM A;  3U8M A;  4NPP A;  4D01 A;  2BG9 B;  3C79 A;  3RI5 A;  4A97 A;  3WTI A;  2BG9 A;  4B5D A;  2UZ6 A;  2XQ5 A;  3EHZ A;  4TWF A;  5CFB A;  4A98 A;  4ILC A;  3PEO A;  4HFI A;  3TLV A;  4IL4 A;  2XZ5 A;  3UU3 A;  4ILA A;  4PIR A;  4TWH A;  2Y54 A;  4QH5 A;  1I9B A;  2XYT A;  4X5T A;  4TNW A;  4HFC A;  5LG3 A;  4XK9 A;  4BFQ A;  2WZY A;  3SQ9 A;  2X00 A;  2Y7Y A;  4DBM A;  4UY2 A;  4TNV A;  4Z91 A;  5L47 A;  4F8H A;  3UQ4 A;  3ZKR A;  2XQ6 A;  2XQ8 A;  5J0Z A;  2Y58 A;  2XQ9 A;  3PMZ A;  4ILB A;  5BW2 A;  2YMD A;  3WTJ A;  3U8L A;  4HFB A;  2QC1 B;  3WTM A;  4ZJT A;  4BQT A;  4QAA A;  4FRR A;  3RQW A;  4ZRU A;  2WNJ A;  3WTN A;  4EZ1 A;  2YN6 A;  4IL9 A;  2BG9 E;  2YOE A;  3LSV A;  2YKS A;  3UU8 A;  4NZB A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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