5AFMA

Alpha7-achbp in complex with lobeline and fragment 4
Total Genus 43
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
43
sequence length
205
structure length
205
Chain Sequence
GEFQRKLYKELVKNYNPDVIPTQRDRPVTVYFSLSLLQIMDVDEKNQVVDVVFWLQMSWTDHYLQWNVSEYPGVKQVSVPISSLWVPDLAAYNAISKPEVLTPQLALVNSSGHVQYLPSIRQRFSCDVSGVDTESGATCKLKFGSWTHHSRELDLQMQEADISGYIPYSRFELVGVTQKRSERFYECCKEPYPDVTFTVTFRKKG
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Transport protein
source organism Homo sapiens
publication title Molecular Blueprint of Allosteric Binding Sites in a Homologue of the Agonist-Binding Domain of the Alpha7 Nicotinic Acetylcholine Receptor.
pubmed doi rcsb
molecule keywords ACETYLCHOLINE-BINDING PROTEIN, NEURONAL ACETYLCHOLINE RECEPT
total genus 43
structure length 205
sequence length 205
chains with identical sequence C, D, E
ec nomenclature
pdb deposition date 2015-01-22
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.70.170.10 Mainly Beta Distorted Sandwich Acetylcholine Binding Protein; Chain: A, Neurotransmitter-gated ion-channel ligand-binding domain 5afmA00
5J5GA 3TLWA 3UUBA 3SQ9A 1I9BA 3LSVA 3RQUA 4LMLA 3TLVA 4TNWA 2XQ4A 3TLTA 2XQ9A 4QABA 4XHEA 2XYTA 1UV6A 5HEGA 1UX2A 5TVCA 5BP0A 2BG9A 4ALXA 3WTNA 3U8NA 3U8LA 5HEJA 2WN9A 5LG3A 4ZR6A 4ILCA 4F8HA 2BG9C 2XQAA 5HCMA 3C84A 4TWHA 3P4WA 3ZKRA 4B5DA 5J5HA 2YMDA 3GUAA 5SYOA 3WTHA 5J5FA 4X5TA 4HFHA 2BG9E 2PH9A 2XNTA 4HFIA 3UU3A 3PEOA 4HFCA 4TNVA 3UU8A 3WIPA 3IGQA 1UW6A 3U8MA 2XQ7A 4BFQA 2PGZA 4PIRA 4QH1A 4Z90A 4Z91A 3RIFA 3UU4A 5HEOA 3RI5A 2C9TA 4HQPA 3WTMA 3SH1A 2UZ6A 3UQ7A 3JAEA 3UU6A 2XQ6A 3EAMA 2YMEA 3PMZA 4D01A 4UY2A 4UXUA 5L4HA 2XYSA 5AFMB 3RHWA 2BYRA 2VL0A 4LMKA 4HFBA 5L47A 5J5IA 3JAFA 5KE4A 2Y7YA 5AFHA 3ZDGA 4COFA 4UM3A 4QH4A 4ZRUA 2Y56A 4A98A 5J0ZA 4UM1A 5AINA 3JADA 2XNUA 5AFJA 4NPPA 3RIAA 5HCJA 2BJ0A 2WNJA 3TLSA 2BG9B 4AFTA 3T4MA 5LXBA 2QC1B 2ZJVA 3SIOA 4LMJA 4IREA 5BRXA 4QACA 2XQ3A 2YOEA 3U8KA 3WTKA 2Y57A 4TWDA 3ZDHA 4FRRA 5BW2A 3EHZA 4IL9A 5AFMA 2BYNA 3P50A 4TWFA 5HEUA 2XQ5A 2YKSA 3UU5A 2XZ5A 4HFDA 4QAAA 2ZJUA 3EI0A 4ZJSA 5CFBA 5CO5A 2XZ6A 4NZBA 2YN6A 4BQTA 4DBMA 4AFGA 2BYPA 4WV9A 3WTIA 5AFKA 3U8JA 4ILAA 4ZZCA 2X00A 2XQ8A 4ZZBA 4ILBA 5KZUA 2BR8A 2X00D 5FJVA 5JMEA 4HFEA 2XNVA 2W8GA 4UM3P 2WNCA 4ZJTA 5IUXA 2BYQA 2Y58A 3SQ6A 4A97A 5L4EA 4EZ1A 4ZK4A 3TLUA 4XK9A 4IL4A 3C79A 3WTJA 3WTLA 3RQWA 4AFHA 5AFNA 2WZYA 5HEHA 2W8FA 4UM3S 5AFLA 4QH5A 2Y54A 2WNLA 3UQ4A 3WTOA 2BR7A 2BYSA 4ZK1A
chains in the Genus database with same CATH superfamily
5J5GA 3TLWA 3UUBA 3SQ9A 1I9BA 3LSVA 3RQUA 4LMLA 3TLVA 4TNWA 2XQ4A 3TLTA 2XQ9A 4QABA 4XHEA 2XYTA 1UV6A 5HEGA 1UX2A 5TVCA 5BP0A 2BG9A 4ALXA 3WTNA 3U8NA 3U8LA 5HEJA 2WN9A 5LG3A 4ZR6A 4ILCA 4F8HA 2BG9C 2XQAA 5HCMA 3C84A 4TWHA 3P4WA 3ZKRA 4B5DA 5J5HA 2YMDA 3GUAA 5SYOA 3WTHA 5J5FA 4X5TA 4HFHA 2BG9E 2PH9A 2XNTA 4HFIA 3UU3A 3PEOA 4HFCA 4TNVA 3UU8A 3WIPA 3IGQA 1UW6A 3U8MA 2XQ7A 4BFQA 2PGZA 4PIRA 4QH1A 4Z90A 4Z91A 3RIFA 3UU4A 5HEOA 3RI5A 2C9TA 4HQPA 3WTMA 3SH1A 2UZ6A 3UQ7A 3JAEA 3UU6A 2XQ6A 3EAMA 2YMEA 3PMZA 4D01A 4UY2A 4UXUA 5L4HA 2XYSA 5AFMB 3RHWA 2BYRA 2VL0A 4LMKA 4HFBA 5L47A 5J5IA 3JAFA 5KE4A 2Y7YA 5AFHA 3ZDGA 4COFA 4UM3A 4QH4A 4ZRUA 2Y56A 4A98A 5J0ZA 4UM1A 5AINA 3JADA 2XNUA 5AFJA 4NPPA 3RIAA 5HCJA 2BJ0A 2WNJA 3TLSA 2BG9B 4AFTA 3T4MA 5LXBA 2QC1B 2ZJVA 3SIOA 4LMJA 4IREA 5BRXA 4QACA 2XQ3A 2YOEA 3U8KA 3WTKA 2Y57A 4TWDA 3ZDHA 4FRRA 5BW2A 3EHZA 4IL9A 5AFMA 2BYNA 3P50A 4TWFA 5HEUA 2XQ5A 2YKSA 3UU5A 2XZ5A 4HFDA 4QAAA 2ZJUA 3EI0A 4ZJSA 5CFBA 5CO5A 2XZ6A 4NZBA 2YN6A 4BQTA 4DBMA 4AFGA 2BYPA 4WV9A 3WTIA 5AFKA 3U8JA 4ILAA 4ZZCA 2X00A 2XQ8A 4ZZBA 4ILBA 5KZUA 2BR8A 2X00D 5FJVA 5JMEA 4HFEA 2XNVA 2W8GA 4UM3P 2WNCA 4ZJTA 5IUXA 2BYQA 2Y58A 3SQ6A 4A97A 5L4EA 4EZ1A 4ZK4A 3TLUA 4XK9A 4IL4A 3C79A 3WTJA 3WTLA 3RQWA 4AFHA 5AFNA 2WZYA 5HEHA 2W8FA 4UM3S 5AFLA 4QH5A 2Y54A 2WNLA 3UQ4A 3WTOA 2BR7A 2BYSA 4ZK1A
chains in the Genus database with same CATH topology
5J5GA 3TLWA 3UUBA 3SQ9A 1I9BA 3LSVA 3RQUA 4LMLA 3TLVA 4TNWA 2XQ4A 3TLTA 2XQ9A 4QABA 4XHEA 2XYTA 1UV6A 5HEGA 1UX2A 5TVCA 5BP0A 2BG9A 4ALXA 3WTNA 3U8NA 3U8LA 5HEJA 2WN9A 5LG3A 4ZR6A 4ILCA 4F8HA 2BG9C 2XQAA 5HCMA 3C84A 4TWHA 3P4WA 3ZKRA 4B5DA 5J5HA 2YMDA 3GUAA 5SYOA 3WTHA 5J5FA 4X5TA 4HFHA 2BG9E 2PH9A 2XNTA 4HFIA 3UU3A 3PEOA 4HFCA 4TNVA 3UU8A 3WIPA 3IGQA 1UW6A 3U8MA 2XQ7A 4BFQA 2PGZA 4PIRA 4QH1A 4Z90A 4Z91A 3RIFA 3UU4A 5HEOA 3RI5A 2C9TA 4HQPA 3WTMA 3SH1A 2UZ6A 3UQ7A 3JAEA 3UU6A 2XQ6A 3EAMA 2YMEA 3PMZA 4D01A 4UY2A 4UXUA 5L4HA 2XYSA 5AFMB 3RHWA 2BYRA 2VL0A 4LMKA 4HFBA 5L47A 5J5IA 3JAFA 5KE4A 2Y7YA 5AFHA 3ZDGA 4COFA 4UM3A 4QH4A 4ZRUA 2Y56A 4A98A 5J0ZA 4UM1A 5AINA 3JADA 2XNUA 5AFJA 4NPPA 3RIAA 5HCJA 2BJ0A 2WNJA 3TLSA 2BG9B 4AFTA 3T4MA 5LXBA 2QC1B 2ZJVA 3SIOA 4LMJA 4IREA 5BRXA 4QACA 2XQ3A 2YOEA 3U8KA 3WTKA 2Y57A 4TWDA 3ZDHA 4FRRA 5BW2A 3EHZA 4IL9A 5AFMA 2BYNA 3P50A 4TWFA 5HEUA 2XQ5A 2YKSA 3UU5A 2XZ5A 4HFDA 4QAAA 2ZJUA 3EI0A 4ZJSA 5CFBA 5CO5A 2XZ6A 4NZBA 2YN6A 4BQTA 4DBMA 4AFGA 2BYPA 4WV9A 3WTIA 5AFKA 3U8JA 4ILAA 4ZZCA 2X00A 2XQ8A 4ZZBA 4ILBA 5KZUA 2BR8A 2X00D 5FJVA 5JMEA 4HFEA 2XNVA 2W8GA 4UM3P 2WNCA 4ZJTA 5IUXA 2BYQA 2Y58A 3SQ6A 4A97A 5L4EA 4EZ1A 4ZK4A 3TLUA 4XK9A 4IL4A 3C79A 3WTJA 3WTLA 3RQWA 4AFHA 5AFNA 2WZYA 5HEHA 2W8FA 4UM3S 5AFLA 4QH5A 2Y54A 2WNLA 3UQ4A 3WTOA 2BR7A 2BYSA 4ZK1A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5J5G A;  3TLW A;  3UUB A;  3SQ9 A;  1I9B A;  3LSV A;  3RQU A;  4LML A;  3TLV A;  4TNW A;  2XQ4 A;  3TLT A;  2XQ9 A;  4QAB A;  4XHE A;  2XYT A;  1UV6 A;  5HEG A;  1UX2 A;  5TVC A;  5BP0 A;  2BG9 A;  4ALX A;  3WTN A;  3U8N A;  3U8L A;  5HEJ A;  2WN9 A;  5LG3 A;  4ZR6 A;  4ILC A;  4F8H A;  2BG9 C;  2XQA A;  5HCM A;  3C84 A;  4TWH A;  3P4W A;  3ZKR A;  4B5D A;  5J5H A;  2YMD A;  3GUA A;  5SYO A;  3WTH A;  5J5F A;  4X5T A;  4HFH A;  2BG9 E;  2PH9 A;  2XNT A;  4HFI A;  3UU3 A;  3PEO A;  4HFC A;  4TNV A;  3UU8 A;  3WIP A;  3IGQ A;  1UW6 A;  3U8M A;  2XQ7 A;  4BFQ A;  2PGZ A;  4PIR A;  4QH1 A;  4Z90 A;  4Z91 A;  3RIF A;  3UU4 A;  5HEO A;  3RI5 A;  2C9T A;  4HQP A;  3WTM A;  3SH1 A;  2UZ6 A;  3UQ7 A;  3JAE A;  3UU6 A;  2XQ6 A;  3EAM A;  2YME A;  3PMZ A;  4D01 A;  4UY2 A;  4UXU A;  5L4H A;  2XYS A;  5AFM B;  3RHW A;  2BYR A;  2VL0 A;  4LMK A;  4HFB A;  5L47 A;  5J5I A;  3JAF A;  5KE4 A;  2Y7Y A;  5AFH A;  3ZDG A;  4COF A;  4UM3 A;  4QH4 A;  4ZRU A;  2Y56 A;  4A98 A;  5J0Z A;  4UM1 A;  5AIN A;  3JAD A;  2XNU A;  5AFJ A;  4NPP A;  3RIA A;  5HCJ A;  2BJ0 A;  2WNJ A;  3TLS A;  2BG9 B;  4AFT A;  3T4M A;  5LXB A;  2QC1 B;  2ZJV A;  3SIO A;  4LMJ A;  4IRE A;  5BRX A;  4QAC A;  2XQ3 A;  2YOE A;  3U8K A;  3WTK A;  2Y57 A;  4TWD A;  3ZDH A;  4FRR A;  5BW2 A;  3EHZ A;  4IL9 A;  5AFM A;  2BYN A;  3P50 A;  4TWF A;  5HEU A;  2XQ5 A;  2YKS A;  3UU5 A;  2XZ5 A;  4HFD A;  4QAA A;  2ZJU A;  3EI0 A;  4ZJS A;  5CFB A;  5CO5 A;  2XZ6 A;  4NZB A;  2YN6 A;  4BQT A;  4DBM A;  4AFG A;  2BYP A;  4WV9 A;  3WTI A;  5AFK A;  3U8J A;  4ILA A;  4ZZC A;  2X00 A;  2XQ8 A;  4ZZB A;  4ILB A;  5KZU A;  2BR8 A;  2X00 D;  5FJV A;  5JME A;  4HFE A;  2XNV A;  2W8G A;  4UM3 P;  2WNC A;  4ZJT A;  5IUX A;  2BYQ A;  2Y58 A;  3SQ6 A;  4A97 A;  5L4E A;  4EZ1 A;  4ZK4 A;  3TLU A;  4XK9 A;  4IL4 A;  3C79 A;  3WTJ A;  3WTL A;  3RQW A;  4AFH A;  5AFN A;  2WZY A;  5HEH A;  2W8F A;  4UM3 S;  5AFL A;  4QH5 A;  2Y54 A;  2WNL A;  3UQ4 A;  3WTO A;  2BR7 A;  2BYS A;  4ZK1 A; 
#chains in the Genus database with same CATH topology
 5J5G A;  3TLW A;  3UUB A;  3SQ9 A;  1I9B A;  3LSV A;  3RQU A;  4LML A;  3TLV A;  4TNW A;  2XQ4 A;  3TLT A;  2XQ9 A;  4QAB A;  4XHE A;  2XYT A;  1UV6 A;  5HEG A;  1UX2 A;  5TVC A;  5BP0 A;  2BG9 A;  4ALX A;  3WTN A;  3U8N A;  3U8L A;  5HEJ A;  2WN9 A;  5LG3 A;  4ZR6 A;  4ILC A;  4F8H A;  2BG9 C;  2XQA A;  5HCM A;  3C84 A;  4TWH A;  3P4W A;  3ZKR A;  4B5D A;  5J5H A;  2YMD A;  3GUA A;  5SYO A;  3WTH A;  5J5F A;  4X5T A;  4HFH A;  2BG9 E;  2PH9 A;  2XNT A;  4HFI A;  3UU3 A;  3PEO A;  4HFC A;  4TNV A;  3UU8 A;  3WIP A;  3IGQ A;  1UW6 A;  3U8M A;  2XQ7 A;  4BFQ A;  2PGZ A;  4PIR A;  4QH1 A;  4Z90 A;  4Z91 A;  3RIF A;  3UU4 A;  5HEO A;  3RI5 A;  2C9T A;  4HQP A;  3WTM A;  3SH1 A;  2UZ6 A;  3UQ7 A;  3JAE A;  3UU6 A;  2XQ6 A;  3EAM A;  2YME A;  3PMZ A;  4D01 A;  4UY2 A;  4UXU A;  5L4H A;  2XYS A;  5AFM B;  3RHW A;  2BYR A;  2VL0 A;  4LMK A;  4HFB A;  5L47 A;  5J5I A;  3JAF A;  5KE4 A;  2Y7Y A;  5AFH A;  3ZDG A;  4COF A;  4UM3 A;  4QH4 A;  4ZRU A;  2Y56 A;  4A98 A;  5J0Z A;  4UM1 A;  5AIN A;  3JAD A;  2XNU A;  5AFJ A;  4NPP A;  3RIA A;  5HCJ A;  2BJ0 A;  2WNJ A;  3TLS A;  2BG9 B;  4AFT A;  3T4M A;  5LXB A;  2QC1 B;  2ZJV A;  3SIO A;  4LMJ A;  4IRE A;  5BRX A;  4QAC A;  2XQ3 A;  2YOE A;  3U8K A;  3WTK A;  2Y57 A;  4TWD A;  3ZDH A;  4FRR A;  5BW2 A;  3EHZ A;  4IL9 A;  5AFM A;  2BYN A;  3P50 A;  4TWF A;  5HEU A;  2XQ5 A;  2YKS A;  3UU5 A;  2XZ5 A;  4HFD A;  4QAA A;  2ZJU A;  3EI0 A;  4ZJS A;  5CFB A;  5CO5 A;  2XZ6 A;  4NZB A;  2YN6 A;  4BQT A;  4DBM A;  4AFG A;  2BYP A;  4WV9 A;  3WTI A;  5AFK A;  3U8J A;  4ILA A;  4ZZC A;  2X00 A;  2XQ8 A;  4ZZB A;  4ILB A;  5KZU A;  2BR8 A;  2X00 D;  5FJV A;  5JME A;  4HFE A;  2XNV A;  2W8G A;  4UM3 P;  2WNC A;  4ZJT A;  5IUX A;  2BYQ A;  2Y58 A;  3SQ6 A;  4A97 A;  5L4E A;  4EZ1 A;  4ZK4 A;  3TLU A;  4XK9 A;  4IL4 A;  3C79 A;  3WTJ A;  3WTL A;  3RQW A;  4AFH A;  5AFN A;  2WZY A;  5HEH A;  2W8F A;  4UM3 S;  5AFL A;  4QH5 A;  2Y54 A;  2WNL A;  3UQ4 A;  3WTO A;  2BR7 A;  2BYS A;  4ZK1 A; 
#chains in the Genus database with same CATH homology
 5J5G A;  3TLW A;  3UUB A;  3SQ9 A;  1I9B A;  3LSV A;  3RQU A;  4LML A;  3TLV A;  4TNW A;  2XQ4 A;  3TLT A;  2XQ9 A;  4QAB A;  4XHE A;  2XYT A;  1UV6 A;  5HEG A;  1UX2 A;  5TVC A;  5BP0 A;  2BG9 A;  4ALX A;  3WTN A;  3U8N A;  3U8L A;  5HEJ A;  2WN9 A;  5LG3 A;  4ZR6 A;  4ILC A;  4F8H A;  2BG9 C;  2XQA A;  5HCM A;  3C84 A;  4TWH A;  3P4W A;  3ZKR A;  4B5D A;  5J5H A;  2YMD A;  3GUA A;  5SYO A;  3WTH A;  5J5F A;  4X5T A;  4HFH A;  2BG9 E;  2PH9 A;  2XNT A;  4HFI A;  3UU3 A;  3PEO A;  4HFC A;  4TNV A;  3UU8 A;  3WIP A;  3IGQ A;  1UW6 A;  3U8M A;  2XQ7 A;  4BFQ A;  2PGZ A;  4PIR A;  4QH1 A;  4Z90 A;  4Z91 A;  3RIF A;  3UU4 A;  5HEO A;  3RI5 A;  2C9T A;  4HQP A;  3WTM A;  3SH1 A;  2UZ6 A;  3UQ7 A;  3JAE A;  3UU6 A;  2XQ6 A;  3EAM A;  2YME A;  3PMZ A;  4D01 A;  4UY2 A;  4UXU A;  5L4H A;  2XYS A;  5AFM B;  3RHW A;  2BYR A;  2VL0 A;  4LMK A;  4HFB A;  5L47 A;  5J5I A;  3JAF A;  5KE4 A;  2Y7Y A;  5AFH A;  3ZDG A;  4COF A;  4UM3 A;  4QH4 A;  4ZRU A;  2Y56 A;  4A98 A;  5J0Z A;  4UM1 A;  5AIN A;  3JAD A;  2XNU A;  5AFJ A;  4NPP A;  3RIA A;  5HCJ A;  2BJ0 A;  2WNJ A;  3TLS A;  2BG9 B;  4AFT A;  3T4M A;  5LXB A;  2QC1 B;  2ZJV A;  3SIO A;  4LMJ A;  4IRE A;  5BRX A;  4QAC A;  2XQ3 A;  2YOE A;  3U8K A;  3WTK A;  2Y57 A;  4TWD A;  3ZDH A;  4FRR A;  5BW2 A;  3EHZ A;  4IL9 A;  5AFM A;  2BYN A;  3P50 A;  4TWF A;  5HEU A;  2XQ5 A;  2YKS A;  3UU5 A;  2XZ5 A;  4HFD A;  4QAA A;  2ZJU A;  3EI0 A;  4ZJS A;  5CFB A;  5CO5 A;  2XZ6 A;  4NZB A;  2YN6 A;  4BQT A;  4DBM A;  4AFG A;  2BYP A;  4WV9 A;  3WTI A;  5AFK A;  3U8J A;  4ILA A;  4ZZC A;  2X00 A;  2XQ8 A;  4ZZB A;  4ILB A;  5KZU A;  2BR8 A;  2X00 D;  5FJV A;  5JME A;  4HFE A;  2XNV A;  2W8G A;  4UM3 P;  2WNC A;  4ZJT A;  5IUX A;  2BYQ A;  2Y58 A;  3SQ6 A;  4A97 A;  5L4E A;  4EZ1 A;  4ZK4 A;  3TLU A;  4XK9 A;  4IL4 A;  3C79 A;  3WTJ A;  3WTL A;  3RQW A;  4AFH A;  5AFN A;  2WZY A;  5HEH A;  2W8F A;  4UM3 S;  5AFL A;  4QH5 A;  2Y54 A;  2WNL A;  3UQ4 A;  3WTO A;  2BR7 A;  2BYS A;  4ZK1 A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...