4BFQA

Assembly of a triple pi-stack of ligands in the binding site of aplysia californica acetylcholine binding protein (achbp)
Total Genus 48
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
48
sequence length
205
structure length
205
Chain Sequence
QANLMRLKSDLFNRSPMYPGPTKDDPLTVTLGFTLQDIVKVDSSTNEVDLVYYEQQRWKLNSLMWDPNEYGNITDFRTSAADIWTPDITAYSSTRPVQVLSPQIAVVTHDGSVMFIPAQRLSFMCDPTGVDSEEGVTCAVKFGSWVYSGFEIDLKTDTDQVDLSSYYASSKYEILSATQTRQVQHYSCCPEPYIDVNLVVKFRER
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Receptor
source organism Aplysia californica
publication title Assembly of a Pi-Pi Stack of Ligands in the Binding Site of an Acetylcholine Binding Protein
pubmed doi rcsb
molecule keywords SOLUBLE ACETYLCHOLINE RECEPTOR
total genus 48
structure length 205
sequence length 205
chains with identical sequence B, C, D, E
ec nomenclature
pdb deposition date 2013-03-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02931 Neur_chan_LBD Neurotransmitter-gated ion-channel ligand binding domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.70.170.10 Mainly Beta Distorted Sandwich Acetylcholine Binding Protein; Chain: A, Neurotransmitter-gated ion-channel ligand-binding domain 4bfqA00
2XNUA 3LSVA 5HEJA 2YOEA 4BQTA 3JAEA 4HFHA 5LXBA 4ZZBA 2XZ5A 2BR7A 4COFA 2W8GA 5AFKA 3U8NA 3C84A 2XNVA 5J5IA 3UU4A 1UW6A 3P50A 5TVCA 2VL0A 5HEGA 2XQAA 4QABA 4LMKA 3RIFA 2XQ3A 2XQ7A 3TLWA 4UM3S 5AFNA 4LMJA 4LMLA 4HFEA 2Y7YA 3WTHA 3WTLA 5L4EA 1UX2A 2XYTA 4ILBA 3TLSA 2YMDA 2QC1B 4QAAA 2BG9C 3ZDGA 2Y56A 5FJVA 3RQUA 2WNJA 2Y57A 3IGQA 4UM3P 2BG9A 5HCMA 4TWDA 4XHEA 4Z91A 3EAMA 2WN9A 2WNLA 3UU6A 2YMEA 5KZUA 4AFTA 5IUXA 2XZ6A 4ZK4A 2BG9B 5J5HA 4QH4A 5BRXA 4HFIA 3JAFA 4ZJSA 4AFGA 2YN6A 2W8FA 3ZKRA 3PEOA 2XQ9A 4B5DA 1I9BA 3PMZA 4NPPA 4PIRA 3UQ7A 2XYSA 4ZK1A 3WTJA 5CFBA 2ZJUA 4ILCA 4IL9A 4ALXA 5AFMA 4IL4A 3UU3A 4WV9A 3WIPA 4TWFA 2ZJVA 4XK9A 3WTOA 4NZBA 3WTMA 2BYSA 5BW2A 2YKSA 3GUAA 2BYQA 3RQWA 3RI5A 4A97A 5AFMB 4BFQA 3C79A 4D01A 2BYNA 2PGZA 5SYOA 3ZDHA 5AFHA 5HCJA 3EHZA 4TWHA 5HEUA 3U8LA 4ILAA 4UXUA 3UQ4A 4ZRUA 3UU8A 1UV6A 3U8MA 3JADA 3SIOA 2XQ8A 4HQPA 3T4MA 5JMEA 3WTNA 4FRRA 3TLVA 5L47A 5L4HA 3P4WA 2Y58A 4QH5A 4QH1A 3SH1A 4DBMA 4UY2A 5AFLA 4ZZCA 5AINA 3U8KA 4X5TA 2BG9E 3UU5A 2UZ6A 2BYRA 2XQ4A 4HFBA 3WTKA 2WZYA 5HEHA 4ZJTA 4AFHA 2XNTA 5J5GA 5LG3A 2X00A 2BJ0A 2Y54A 3SQ6A 2BYPA 4HFCA 4TNWA 5BP0A 5CO5A 3RHWA 3TLTA 5HEOA 2XQ6A 3U8JA 2WNCA 3RIAA 4UM3A 5KE4A 4QACA 4TNVA 4UM1A 4HFDA 4ZR6A 4A98A 2BR8A 3WTIA 5J0ZA 3SQ9A 2XQ5A 2C9TA 5J5FA 2PH9A 5AFJA 4F8HA 4Z90A 4EZ1A 3UUBA 3TLUA 3EI0A 2X00D 4IREA
chains in the Genus database with same CATH superfamily
2XNUA 3LSVA 5HEJA 2YOEA 4BQTA 3JAEA 4HFHA 5LXBA 4ZZBA 2XZ5A 2BR7A 4COFA 2W8GA 5AFKA 3U8NA 3C84A 2XNVA 5J5IA 3UU4A 1UW6A 3P50A 5TVCA 2VL0A 5HEGA 2XQAA 4QABA 4LMKA 3RIFA 2XQ3A 2XQ7A 3TLWA 4UM3S 5AFNA 4LMJA 4LMLA 4HFEA 2Y7YA 3WTHA 3WTLA 5L4EA 1UX2A 2XYTA 4ILBA 3TLSA 2YMDA 2QC1B 4QAAA 2BG9C 3ZDGA 2Y56A 5FJVA 3RQUA 2WNJA 2Y57A 3IGQA 4UM3P 2BG9A 5HCMA 4TWDA 4XHEA 4Z91A 3EAMA 2WN9A 2WNLA 3UU6A 2YMEA 5KZUA 4AFTA 5IUXA 2XZ6A 4ZK4A 2BG9B 5J5HA 4QH4A 5BRXA 4HFIA 3JAFA 4ZJSA 4AFGA 2YN6A 2W8FA 3ZKRA 3PEOA 2XQ9A 4B5DA 1I9BA 3PMZA 4NPPA 4PIRA 3UQ7A 2XYSA 4ZK1A 3WTJA 5CFBA 2ZJUA 4ILCA 4IL9A 4ALXA 5AFMA 4IL4A 3UU3A 4WV9A 3WIPA 4TWFA 2ZJVA 4XK9A 3WTOA 4NZBA 3WTMA 2BYSA 5BW2A 2YKSA 3GUAA 2BYQA 3RQWA 3RI5A 4A97A 5AFMB 4BFQA 3C79A 4D01A 2BYNA 2PGZA 5SYOA 3ZDHA 5AFHA 5HCJA 3EHZA 4TWHA 5HEUA 3U8LA 4ILAA 4UXUA 3UQ4A 4ZRUA 3UU8A 1UV6A 3U8MA 3JADA 3SIOA 2XQ8A 4HQPA 3T4MA 5JMEA 3WTNA 4FRRA 3TLVA 5L47A 5L4HA 3P4WA 2Y58A 4QH5A 4QH1A 3SH1A 4DBMA 4UY2A 5AFLA 4ZZCA 5AINA 3U8KA 4X5TA 2BG9E 3UU5A 2UZ6A 2BYRA 2XQ4A 4HFBA 3WTKA 2WZYA 5HEHA 4ZJTA 4AFHA 2XNTA 5J5GA 5LG3A 2X00A 2BJ0A 2Y54A 3SQ6A 2BYPA 4HFCA 4TNWA 5BP0A 5CO5A 3RHWA 3TLTA 5HEOA 2XQ6A 3U8JA 2WNCA 3RIAA 4UM3A 5KE4A 4QACA 4TNVA 4UM1A 4HFDA 4ZR6A 4A98A 2BR8A 3WTIA 5J0ZA 3SQ9A 2XQ5A 2C9TA 5J5FA 2PH9A 5AFJA 4F8HA 4Z90A 4EZ1A 3UUBA 3TLUA 3EI0A 2X00D 4IREA
chains in the Genus database with same CATH topology
2XNUA 3LSVA 5HEJA 2YOEA 4BQTA 3JAEA 4HFHA 5LXBA 4ZZBA 2XZ5A 2BR7A 4COFA 2W8GA 5AFKA 3U8NA 3C84A 2XNVA 5J5IA 3UU4A 1UW6A 3P50A 5TVCA 2VL0A 5HEGA 2XQAA 4QABA 4LMKA 3RIFA 2XQ3A 2XQ7A 3TLWA 4UM3S 5AFNA 4LMJA 4LMLA 4HFEA 2Y7YA 3WTHA 3WTLA 5L4EA 1UX2A 2XYTA 4ILBA 3TLSA 2YMDA 2QC1B 4QAAA 2BG9C 3ZDGA 2Y56A 5FJVA 3RQUA 2WNJA 2Y57A 3IGQA 4UM3P 2BG9A 5HCMA 4TWDA 4XHEA 4Z91A 3EAMA 2WN9A 2WNLA 3UU6A 2YMEA 5KZUA 4AFTA 5IUXA 2XZ6A 4ZK4A 2BG9B 5J5HA 4QH4A 5BRXA 4HFIA 3JAFA 4ZJSA 4AFGA 2YN6A 2W8FA 3ZKRA 3PEOA 2XQ9A 4B5DA 1I9BA 3PMZA 4NPPA 4PIRA 3UQ7A 2XYSA 4ZK1A 3WTJA 5CFBA 2ZJUA 4ILCA 4IL9A 4ALXA 5AFMA 4IL4A 3UU3A 4WV9A 3WIPA 4TWFA 2ZJVA 4XK9A 3WTOA 4NZBA 3WTMA 2BYSA 5BW2A 2YKSA 3GUAA 2BYQA 3RQWA 3RI5A 4A97A 5AFMB 4BFQA 3C79A 4D01A 2BYNA 2PGZA 5SYOA 3ZDHA 5AFHA 5HCJA 3EHZA 4TWHA 5HEUA 3U8LA 4ILAA 4UXUA 3UQ4A 4ZRUA 3UU8A 1UV6A 3U8MA 3JADA 3SIOA 2XQ8A 4HQPA 3T4MA 5JMEA 3WTNA 4FRRA 3TLVA 5L47A 5L4HA 3P4WA 2Y58A 4QH5A 4QH1A 3SH1A 4DBMA 4UY2A 5AFLA 4ZZCA 5AINA 3U8KA 4X5TA 2BG9E 3UU5A 2UZ6A 2BYRA 2XQ4A 4HFBA 3WTKA 2WZYA 5HEHA 4ZJTA 4AFHA 2XNTA 5J5GA 5LG3A 2X00A 2BJ0A 2Y54A 3SQ6A 2BYPA 4HFCA 4TNWA 5BP0A 5CO5A 3RHWA 3TLTA 5HEOA 2XQ6A 3U8JA 2WNCA 3RIAA 4UM3A 5KE4A 4QACA 4TNVA 4UM1A 4HFDA 4ZR6A 4A98A 2BR8A 3WTIA 5J0ZA 3SQ9A 2XQ5A 2C9TA 5J5FA 2PH9A 5AFJA 4F8HA 4Z90A 4EZ1A 3UUBA 3TLUA 3EI0A 2X00D 4IREA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2XNU A;  3LSV A;  5HEJ A;  2YOE A;  4BQT A;  3JAE A;  4HFH A;  5LXB A;  4ZZB A;  2XZ5 A;  2BR7 A;  4COF A;  2W8G A;  5AFK A;  3U8N A;  3C84 A;  2XNV A;  5J5I A;  3UU4 A;  1UW6 A;  3P50 A;  5TVC A;  2VL0 A;  5HEG A;  2XQA A;  4QAB A;  4LMK A;  3RIF A;  2XQ3 A;  2XQ7 A;  3TLW A;  4UM3 S;  5AFN A;  4LMJ A;  4LML A;  4HFE A;  2Y7Y A;  3WTH A;  3WTL A;  5L4E A;  1UX2 A;  2XYT A;  4ILB A;  3TLS A;  2YMD A;  2QC1 B;  4QAA A;  2BG9 C;  3ZDG A;  2Y56 A;  5FJV A;  3RQU A;  2WNJ A;  2Y57 A;  3IGQ A;  4UM3 P;  2BG9 A;  5HCM A;  4TWD A;  4XHE A;  4Z91 A;  3EAM A;  2WN9 A;  2WNL A;  3UU6 A;  2YME A;  5KZU A;  4AFT A;  5IUX A;  2XZ6 A;  4ZK4 A;  2BG9 B;  5J5H A;  4QH4 A;  5BRX A;  4HFI A;  3JAF A;  4ZJS A;  4AFG A;  2YN6 A;  2W8F A;  3ZKR A;  3PEO A;  2XQ9 A;  4B5D A;  1I9B A;  3PMZ A;  4NPP A;  4PIR A;  3UQ7 A;  2XYS A;  4ZK1 A;  3WTJ A;  5CFB A;  2ZJU A;  4ILC A;  4IL9 A;  4ALX A;  5AFM A;  4IL4 A;  3UU3 A;  4WV9 A;  3WIP A;  4TWF A;  2ZJV A;  4XK9 A;  3WTO A;  4NZB A;  3WTM A;  2BYS A;  5BW2 A;  2YKS A;  3GUA A;  2BYQ A;  3RQW A;  3RI5 A;  4A97 A;  5AFM B;  4BFQ A;  3C79 A;  4D01 A;  2BYN A;  2PGZ A;  5SYO A;  3ZDH A;  5AFH A;  5HCJ A;  3EHZ A;  4TWH A;  5HEU A;  3U8L A;  4ILA A;  4UXU A;  3UQ4 A;  4ZRU A;  3UU8 A;  1UV6 A;  3U8M A;  3JAD A;  3SIO A;  2XQ8 A;  4HQP A;  3T4M A;  5JME A;  3WTN A;  4FRR A;  3TLV A;  5L47 A;  5L4H A;  3P4W A;  2Y58 A;  4QH5 A;  4QH1 A;  3SH1 A;  4DBM A;  4UY2 A;  5AFL A;  4ZZC A;  5AIN A;  3U8K A;  4X5T A;  2BG9 E;  3UU5 A;  2UZ6 A;  2BYR A;  2XQ4 A;  4HFB A;  3WTK A;  2WZY A;  5HEH A;  4ZJT A;  4AFH A;  2XNT A;  5J5G A;  5LG3 A;  2X00 A;  2BJ0 A;  2Y54 A;  3SQ6 A;  2BYP A;  4HFC A;  4TNW A;  5BP0 A;  5CO5 A;  3RHW A;  3TLT A;  5HEO A;  2XQ6 A;  3U8J A;  2WNC A;  3RIA A;  4UM3 A;  5KE4 A;  4QAC A;  4TNV A;  4UM1 A;  4HFD A;  4ZR6 A;  4A98 A;  2BR8 A;  3WTI A;  5J0Z A;  3SQ9 A;  2XQ5 A;  2C9T A;  5J5F A;  2PH9 A;  5AFJ A;  4F8H A;  4Z90 A;  4EZ1 A;  3UUB A;  3TLU A;  3EI0 A;  2X00 D;  4IRE A; 
#chains in the Genus database with same CATH topology
 2XNU A;  3LSV A;  5HEJ A;  2YOE A;  4BQT A;  3JAE A;  4HFH A;  5LXB A;  4ZZB A;  2XZ5 A;  2BR7 A;  4COF A;  2W8G A;  5AFK A;  3U8N A;  3C84 A;  2XNV A;  5J5I A;  3UU4 A;  1UW6 A;  3P50 A;  5TVC A;  2VL0 A;  5HEG A;  2XQA A;  4QAB A;  4LMK A;  3RIF A;  2XQ3 A;  2XQ7 A;  3TLW A;  4UM3 S;  5AFN A;  4LMJ A;  4LML A;  4HFE A;  2Y7Y A;  3WTH A;  3WTL A;  5L4E A;  1UX2 A;  2XYT A;  4ILB A;  3TLS A;  2YMD A;  2QC1 B;  4QAA A;  2BG9 C;  3ZDG A;  2Y56 A;  5FJV A;  3RQU A;  2WNJ A;  2Y57 A;  3IGQ A;  4UM3 P;  2BG9 A;  5HCM A;  4TWD A;  4XHE A;  4Z91 A;  3EAM A;  2WN9 A;  2WNL A;  3UU6 A;  2YME A;  5KZU A;  4AFT A;  5IUX A;  2XZ6 A;  4ZK4 A;  2BG9 B;  5J5H A;  4QH4 A;  5BRX A;  4HFI A;  3JAF A;  4ZJS A;  4AFG A;  2YN6 A;  2W8F A;  3ZKR A;  3PEO A;  2XQ9 A;  4B5D A;  1I9B A;  3PMZ A;  4NPP A;  4PIR A;  3UQ7 A;  2XYS A;  4ZK1 A;  3WTJ A;  5CFB A;  2ZJU A;  4ILC A;  4IL9 A;  4ALX A;  5AFM A;  4IL4 A;  3UU3 A;  4WV9 A;  3WIP A;  4TWF A;  2ZJV A;  4XK9 A;  3WTO A;  4NZB A;  3WTM A;  2BYS A;  5BW2 A;  2YKS A;  3GUA A;  2BYQ A;  3RQW A;  3RI5 A;  4A97 A;  5AFM B;  4BFQ A;  3C79 A;  4D01 A;  2BYN A;  2PGZ A;  5SYO A;  3ZDH A;  5AFH A;  5HCJ A;  3EHZ A;  4TWH A;  5HEU A;  3U8L A;  4ILA A;  4UXU A;  3UQ4 A;  4ZRU A;  3UU8 A;  1UV6 A;  3U8M A;  3JAD A;  3SIO A;  2XQ8 A;  4HQP A;  3T4M A;  5JME A;  3WTN A;  4FRR A;  3TLV A;  5L47 A;  5L4H A;  3P4W A;  2Y58 A;  4QH5 A;  4QH1 A;  3SH1 A;  4DBM A;  4UY2 A;  5AFL A;  4ZZC A;  5AIN A;  3U8K A;  4X5T A;  2BG9 E;  3UU5 A;  2UZ6 A;  2BYR A;  2XQ4 A;  4HFB A;  3WTK A;  2WZY A;  5HEH A;  4ZJT A;  4AFH A;  2XNT A;  5J5G A;  5LG3 A;  2X00 A;  2BJ0 A;  2Y54 A;  3SQ6 A;  2BYP A;  4HFC A;  4TNW A;  5BP0 A;  5CO5 A;  3RHW A;  3TLT A;  5HEO A;  2XQ6 A;  3U8J A;  2WNC A;  3RIA A;  4UM3 A;  5KE4 A;  4QAC A;  4TNV A;  4UM1 A;  4HFD A;  4ZR6 A;  4A98 A;  2BR8 A;  3WTI A;  5J0Z A;  3SQ9 A;  2XQ5 A;  2C9T A;  5J5F A;  2PH9 A;  5AFJ A;  4F8H A;  4Z90 A;  4EZ1 A;  3UUB A;  3TLU A;  3EI0 A;  2X00 D;  4IRE A; 
#chains in the Genus database with same CATH homology
 2XNU A;  3LSV A;  5HEJ A;  2YOE A;  4BQT A;  3JAE A;  4HFH A;  5LXB A;  4ZZB A;  2XZ5 A;  2BR7 A;  4COF A;  2W8G A;  5AFK A;  3U8N A;  3C84 A;  2XNV A;  5J5I A;  3UU4 A;  1UW6 A;  3P50 A;  5TVC A;  2VL0 A;  5HEG A;  2XQA A;  4QAB A;  4LMK A;  3RIF A;  2XQ3 A;  2XQ7 A;  3TLW A;  4UM3 S;  5AFN A;  4LMJ A;  4LML A;  4HFE A;  2Y7Y A;  3WTH A;  3WTL A;  5L4E A;  1UX2 A;  2XYT A;  4ILB A;  3TLS A;  2YMD A;  2QC1 B;  4QAA A;  2BG9 C;  3ZDG A;  2Y56 A;  5FJV A;  3RQU A;  2WNJ A;  2Y57 A;  3IGQ A;  4UM3 P;  2BG9 A;  5HCM A;  4TWD A;  4XHE A;  4Z91 A;  3EAM A;  2WN9 A;  2WNL A;  3UU6 A;  2YME A;  5KZU A;  4AFT A;  5IUX A;  2XZ6 A;  4ZK4 A;  2BG9 B;  5J5H A;  4QH4 A;  5BRX A;  4HFI A;  3JAF A;  4ZJS A;  4AFG A;  2YN6 A;  2W8F A;  3ZKR A;  3PEO A;  2XQ9 A;  4B5D A;  1I9B A;  3PMZ A;  4NPP A;  4PIR A;  3UQ7 A;  2XYS A;  4ZK1 A;  3WTJ A;  5CFB A;  2ZJU A;  4ILC A;  4IL9 A;  4ALX A;  5AFM A;  4IL4 A;  3UU3 A;  4WV9 A;  3WIP A;  4TWF A;  2ZJV A;  4XK9 A;  3WTO A;  4NZB A;  3WTM A;  2BYS A;  5BW2 A;  2YKS A;  3GUA A;  2BYQ A;  3RQW A;  3RI5 A;  4A97 A;  5AFM B;  4BFQ A;  3C79 A;  4D01 A;  2BYN A;  2PGZ A;  5SYO A;  3ZDH A;  5AFH A;  5HCJ A;  3EHZ A;  4TWH A;  5HEU A;  3U8L A;  4ILA A;  4UXU A;  3UQ4 A;  4ZRU A;  3UU8 A;  1UV6 A;  3U8M A;  3JAD A;  3SIO A;  2XQ8 A;  4HQP A;  3T4M A;  5JME A;  3WTN A;  4FRR A;  3TLV A;  5L47 A;  5L4H A;  3P4W A;  2Y58 A;  4QH5 A;  4QH1 A;  3SH1 A;  4DBM A;  4UY2 A;  5AFL A;  4ZZC A;  5AIN A;  3U8K A;  4X5T A;  2BG9 E;  3UU5 A;  2UZ6 A;  2BYR A;  2XQ4 A;  4HFB A;  3WTK A;  2WZY A;  5HEH A;  4ZJT A;  4AFH A;  2XNT A;  5J5G A;  5LG3 A;  2X00 A;  2BJ0 A;  2Y54 A;  3SQ6 A;  2BYP A;  4HFC A;  4TNW A;  5BP0 A;  5CO5 A;  3RHW A;  3TLT A;  5HEO A;  2XQ6 A;  3U8J A;  2WNC A;  3RIA A;  4UM3 A;  5KE4 A;  4QAC A;  4TNV A;  4UM1 A;  4HFD A;  4ZR6 A;  4A98 A;  2BR8 A;  3WTI A;  5J0Z A;  3SQ9 A;  2XQ5 A;  2C9T A;  5J5F A;  2PH9 A;  5AFJ A;  4F8H A;  4Z90 A;  4EZ1 A;  3UUB A;  3TLU A;  3EI0 A;  2X00 D;  4IRE A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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