4BFQA

Assembly of a triple pi-stack of ligands in the binding site of aplysia californica acetylcholine binding protein (achbp)
Total Genus 48
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
48
sequence length
205
structure length
205
Chain Sequence
QANLMRLKSDLFNRSPMYPGPTKDDPLTVTLGFTLQDIVKVDSSTNEVDLVYYEQQRWKLNSLMWDPNEYGNITDFRTSAADIWTPDITAYSSTRPVQVLSPQIAVVTHDGSVMFIPAQRLSFMCDPTGVDSEEGVTCAVKFGSWVYSGFEIDLKTDTDQVDLSSYYASSKYEILSATQTRQVQHYSCCPEPYIDVNLVVKFRER
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords SOLUBLE ACETYLCHOLINE RECEPTOR
publication title Assembly of a Pi-Pi Stack of Ligands in the Binding Site of an Acetylcholine Binding Protein
pubmed doi rcsb
source organism Aplysia californica
molecule tags Receptor
total genus 48
structure length 205
sequence length 205
chains with identical sequence B, C, D, E
ec nomenclature
pdb deposition date 2013-03-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02931 Neur_chan_LBD Neurotransmitter-gated ion-channel ligand binding domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.70.170.10 Mainly Beta Distorted Sandwich Acetylcholine Binding Protein; Chain: A, Neurotransmitter-gated ion-channel ligand-binding domain 4bfqA00
4COFA 1UV6A 3WTKA 5J5IA 4A98A 5LG3A 2XYSA 4LMLA 4TNVA 4ZR6A 3WTJA 5AFLA 3JAFA 4ZK1A 4D01A 1I9BA 3SH1A 4HFCA 4ZRUA 3RHWA 4QACA 3UQ7A 3TLWA 4WV9A 5HCMA 4HFHA 5IUXA 2WNJA 4NZBA 3RQUA 5L4EA 3RQWA 4XK9A 2YMDA 3P4WA 2W8GA 4B5DA 4AFHA 2BR7A 5AFNA 2ZJVA 4PIRA 5SYOA 2BYQA 4AFGA 4F8HA 2BR8A 5HEGA 3PMZA 3TLVA 2XZ6A 2WN9A 2BYSA 3RIAA 2XQ8A 2XQ4A 4TWHA 2BYRA 4A97A 2XNVA 2VL0A 2Y54A 4IL4A 4IREA 3C84A 3PEOA 2XYTA 3U8MA 4ALXA 4UM3S 2XQ3A 4TWDA 2XNUA 3UQ4A 3UU4A 4QAAA 2ZJUA 4NPPA 4UM3A 5J0ZA 3SQ6A 3TLSA 3WTOA 2Y7YA 4TWFA 5L4HA 4IL9A 1UW6A 2PGZA 5KE4A 3SQ9A 3ZKRA 5J5GA 4ILBA 4ILAA 4QH4A 4XHEA 4ZJSA 3U8JA 4UM1A 3WTMA 5HEHA 5JMEA 3GUAA 4HFEA 4ZZBA 4QABA 5LXBA 3WTIA 5BP0A 2Y57A 2BG9B 2YMEA 2XNTA 3RI5A 2BJ0A 2XQ9A 5BRXA 3C79A 5J5FA 4LMJA 2X00A 5HEJA 3TLTA 4Z91A 2XQ7A 3P50A 3UU5A 2W8FA 2PH9A 5J5HA 3UU8A 2X00D 4UM3P 3EAMA 2BYPA 2Y56A 4TNWA 5BW2A 2UZ6A 4X5TA 2WZYA 2BG9E 3WTLA 4UY2A 4BQTA 3U8KA 3JAEA 3UU3A 3TLUA 5TVCA 5AFMB 5L47A 5HEOA 1UX2A 2XQAA 3UU6A 3JADA 4BFQA 3WTHA 4DBMA 3U8NA 3EHZA 4Z90A 3WTNA 4FRRA 5HEUA 4LMKA 5CO5A 4ILCA 2WNLA 4HQPA 5AFHA 2Y58A 4ZK4A 5AFJA 4HFIA 2XQ6A 5AFKA 2YKSA 3T4MA 5CFBA 2QC1B 4ZZCA 3RIFA 5KZUA 4EZ1A 4QH1A 4HFDA 5HCJA 3ZDGA 4QH5A 5AINA 3UUBA 5FJVA 4AFTA 3SIOA 2YOEA 2WNCA 3LSVA 2YN6A 3IGQA 2BYNA 2XQ5A 3U8LA 5AFMA 4ZJTA 2C9TA 3ZDHA 3EI0A 4HFBA 3WIPA 2XZ5A 4UXUA 2BG9A 2BG9C
chains in the Genus database with same CATH superfamily
4COFA 1UV6A 3WTKA 5J5IA 4A98A 5LG3A 2XYSA 4LMLA 4TNVA 4ZR6A 3WTJA 5AFLA 3JAFA 4ZK1A 4D01A 1I9BA 3SH1A 4HFCA 4ZRUA 3RHWA 4QACA 3UQ7A 3TLWA 4WV9A 5HCMA 4HFHA 5IUXA 2WNJA 4NZBA 3RQUA 5L4EA 3RQWA 4XK9A 2YMDA 3P4WA 2W8GA 4B5DA 4AFHA 2BR7A 5AFNA 2ZJVA 4PIRA 5SYOA 2BYQA 4AFGA 4F8HA 2BR8A 5HEGA 3PMZA 3TLVA 2XZ6A 2WN9A 2BYSA 3RIAA 2XQ8A 2XQ4A 4TWHA 2BYRA 4A97A 2XNVA 2VL0A 2Y54A 4IL4A 4IREA 3C84A 3PEOA 2XYTA 3U8MA 4ALXA 4UM3S 2XQ3A 4TWDA 2XNUA 3UQ4A 3UU4A 4QAAA 2ZJUA 4NPPA 4UM3A 5J0ZA 3SQ6A 3TLSA 3WTOA 2Y7YA 4TWFA 5L4HA 4IL9A 1UW6A 2PGZA 5KE4A 3SQ9A 3ZKRA 5J5GA 4ILBA 4ILAA 4QH4A 4XHEA 4ZJSA 3U8JA 4UM1A 3WTMA 5HEHA 5JMEA 3GUAA 4HFEA 4ZZBA 4QABA 5LXBA 3WTIA 5BP0A 2Y57A 2BG9B 2YMEA 2XNTA 3RI5A 2BJ0A 2XQ9A 5BRXA 3C79A 5J5FA 4LMJA 2X00A 5HEJA 3TLTA 4Z91A 2XQ7A 3P50A 3UU5A 2W8FA 2PH9A 5J5HA 3UU8A 2X00D 4UM3P 3EAMA 2BYPA 2Y56A 4TNWA 5BW2A 2UZ6A 4X5TA 2WZYA 2BG9E 3WTLA 4UY2A 4BQTA 3U8KA 3JAEA 3UU3A 3TLUA 5TVCA 5AFMB 5L47A 5HEOA 1UX2A 2XQAA 3UU6A 3JADA 4BFQA 3WTHA 4DBMA 3U8NA 3EHZA 4Z90A 3WTNA 4FRRA 5HEUA 4LMKA 5CO5A 4ILCA 2WNLA 4HQPA 5AFHA 2Y58A 4ZK4A 5AFJA 4HFIA 2XQ6A 5AFKA 2YKSA 3T4MA 5CFBA 2QC1B 4ZZCA 3RIFA 5KZUA 4EZ1A 4QH1A 4HFDA 5HCJA 3ZDGA 4QH5A 5AINA 3UUBA 5FJVA 4AFTA 3SIOA 2YOEA 2WNCA 3LSVA 2YN6A 3IGQA 2BYNA 2XQ5A 3U8LA 5AFMA 4ZJTA 2C9TA 3ZDHA 3EI0A 4HFBA 3WIPA 2XZ5A 4UXUA 2BG9A 2BG9C
chains in the Genus database with same CATH topology
4COFA 1UV6A 3WTKA 5J5IA 4A98A 5LG3A 2XYSA 4LMLA 4TNVA 4ZR6A 3WTJA 5AFLA 3JAFA 4ZK1A 4D01A 1I9BA 3SH1A 4HFCA 4ZRUA 3RHWA 4QACA 3UQ7A 3TLWA 4WV9A 5HCMA 4HFHA 5IUXA 2WNJA 4NZBA 3RQUA 5L4EA 3RQWA 4XK9A 2YMDA 3P4WA 2W8GA 4B5DA 4AFHA 2BR7A 5AFNA 2ZJVA 4PIRA 5SYOA 2BYQA 4AFGA 4F8HA 2BR8A 5HEGA 3PMZA 3TLVA 2XZ6A 2WN9A 2BYSA 3RIAA 2XQ8A 2XQ4A 4TWHA 2BYRA 4A97A 2XNVA 2VL0A 2Y54A 4IL4A 4IREA 3C84A 3PEOA 2XYTA 3U8MA 4ALXA 4UM3S 2XQ3A 4TWDA 2XNUA 3UQ4A 3UU4A 4QAAA 2ZJUA 4NPPA 4UM3A 5J0ZA 3SQ6A 3TLSA 3WTOA 2Y7YA 4TWFA 5L4HA 4IL9A 1UW6A 2PGZA 5KE4A 3SQ9A 3ZKRA 5J5GA 4ILBA 4ILAA 4QH4A 4XHEA 4ZJSA 3U8JA 4UM1A 3WTMA 5HEHA 5JMEA 3GUAA 4HFEA 4ZZBA 4QABA 5LXBA 3WTIA 5BP0A 2Y57A 2BG9B 2YMEA 2XNTA 3RI5A 2BJ0A 2XQ9A 5BRXA 3C79A 5J5FA 4LMJA 2X00A 5HEJA 3TLTA 4Z91A 2XQ7A 3P50A 3UU5A 2W8FA 2PH9A 5J5HA 3UU8A 2X00D 4UM3P 3EAMA 2BYPA 2Y56A 4TNWA 5BW2A 2UZ6A 4X5TA 2WZYA 2BG9E 3WTLA 4UY2A 4BQTA 3U8KA 3JAEA 3UU3A 3TLUA 5TVCA 5AFMB 5L47A 5HEOA 1UX2A 2XQAA 3UU6A 3JADA 4BFQA 3WTHA 4DBMA 3U8NA 3EHZA 4Z90A 3WTNA 4FRRA 5HEUA 4LMKA 5CO5A 4ILCA 2WNLA 4HQPA 5AFHA 2Y58A 4ZK4A 5AFJA 4HFIA 2XQ6A 5AFKA 2YKSA 3T4MA 5CFBA 2QC1B 4ZZCA 3RIFA 5KZUA 4EZ1A 4QH1A 4HFDA 5HCJA 3ZDGA 4QH5A 5AINA 3UUBA 5FJVA 4AFTA 3SIOA 2YOEA 2WNCA 3LSVA 2YN6A 3IGQA 2BYNA 2XQ5A 3U8LA 5AFMA 4ZJTA 2C9TA 3ZDHA 3EI0A 4HFBA 3WIPA 2XZ5A 4UXUA 2BG9A 2BG9C
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4COF A;  1UV6 A;  3WTK A;  5J5I A;  4A98 A;  5LG3 A;  2XYS A;  4LML A;  4TNV A;  4ZR6 A;  3WTJ A;  5AFL A;  3JAF A;  4ZK1 A;  4D01 A;  1I9B A;  3SH1 A;  4HFC A;  4ZRU A;  3RHW A;  4QAC A;  3UQ7 A;  3TLW A;  4WV9 A;  5HCM A;  4HFH A;  5IUX A;  2WNJ A;  4NZB A;  3RQU A;  5L4E A;  3RQW A;  4XK9 A;  2YMD A;  3P4W A;  2W8G A;  4B5D A;  4AFH A;  2BR7 A;  5AFN A;  2ZJV A;  4PIR A;  5SYO A;  2BYQ A;  4AFG A;  4F8H A;  2BR8 A;  5HEG A;  3PMZ A;  3TLV A;  2XZ6 A;  2WN9 A;  2BYS A;  3RIA A;  2XQ8 A;  2XQ4 A;  4TWH A;  2BYR A;  4A97 A;  2XNV A;  2VL0 A;  2Y54 A;  4IL4 A;  4IRE A;  3C84 A;  3PEO A;  2XYT A;  3U8M A;  4ALX A;  4UM3 S;  2XQ3 A;  4TWD A;  2XNU A;  3UQ4 A;  3UU4 A;  4QAA A;  2ZJU A;  4NPP A;  4UM3 A;  5J0Z A;  3SQ6 A;  3TLS A;  3WTO A;  2Y7Y A;  4TWF A;  5L4H A;  4IL9 A;  1UW6 A;  2PGZ A;  5KE4 A;  3SQ9 A;  3ZKR A;  5J5G A;  4ILB A;  4ILA A;  4QH4 A;  4XHE A;  4ZJS A;  3U8J A;  4UM1 A;  3WTM A;  5HEH A;  5JME A;  3GUA A;  4HFE A;  4ZZB A;  4QAB A;  5LXB A;  3WTI A;  5BP0 A;  2Y57 A;  2BG9 B;  2YME A;  2XNT A;  3RI5 A;  2BJ0 A;  2XQ9 A;  5BRX A;  3C79 A;  5J5F A;  4LMJ A;  2X00 A;  5HEJ A;  3TLT A;  4Z91 A;  2XQ7 A;  3P50 A;  3UU5 A;  2W8F A;  2PH9 A;  5J5H A;  3UU8 A;  2X00 D;  4UM3 P;  3EAM A;  2BYP A;  2Y56 A;  4TNW A;  5BW2 A;  2UZ6 A;  4X5T A;  2WZY A;  2BG9 E;  3WTL A;  4UY2 A;  4BQT A;  3U8K A;  3JAE A;  3UU3 A;  3TLU A;  5TVC A;  5AFM B;  5L47 A;  5HEO A;  1UX2 A;  2XQA A;  3UU6 A;  3JAD A;  4BFQ A;  3WTH A;  4DBM A;  3U8N A;  3EHZ A;  4Z90 A;  3WTN A;  4FRR A;  5HEU A;  4LMK A;  5CO5 A;  4ILC A;  2WNL A;  4HQP A;  5AFH A;  2Y58 A;  4ZK4 A;  5AFJ A;  4HFI A;  2XQ6 A;  5AFK A;  2YKS A;  3T4M A;  5CFB A;  2QC1 B;  4ZZC A;  3RIF A;  5KZU A;  4EZ1 A;  4QH1 A;  4HFD A;  5HCJ A;  3ZDG A;  4QH5 A;  5AIN A;  3UUB A;  5FJV A;  4AFT A;  3SIO A;  2YOE A;  2WNC A;  3LSV A;  2YN6 A;  3IGQ A;  2BYN A;  2XQ5 A;  3U8L A;  5AFM A;  4ZJT A;  2C9T A;  3ZDH A;  3EI0 A;  4HFB A;  3WIP A;  2XZ5 A;  4UXU A;  2BG9 A;  2BG9 C; 
#chains in the Genus database with same CATH topology
 4COF A;  1UV6 A;  3WTK A;  5J5I A;  4A98 A;  5LG3 A;  2XYS A;  4LML A;  4TNV A;  4ZR6 A;  3WTJ A;  5AFL A;  3JAF A;  4ZK1 A;  4D01 A;  1I9B A;  3SH1 A;  4HFC A;  4ZRU A;  3RHW A;  4QAC A;  3UQ7 A;  3TLW A;  4WV9 A;  5HCM A;  4HFH A;  5IUX A;  2WNJ A;  4NZB A;  3RQU A;  5L4E A;  3RQW A;  4XK9 A;  2YMD A;  3P4W A;  2W8G A;  4B5D A;  4AFH A;  2BR7 A;  5AFN A;  2ZJV A;  4PIR A;  5SYO A;  2BYQ A;  4AFG A;  4F8H A;  2BR8 A;  5HEG A;  3PMZ A;  3TLV A;  2XZ6 A;  2WN9 A;  2BYS A;  3RIA A;  2XQ8 A;  2XQ4 A;  4TWH A;  2BYR A;  4A97 A;  2XNV A;  2VL0 A;  2Y54 A;  4IL4 A;  4IRE A;  3C84 A;  3PEO A;  2XYT A;  3U8M A;  4ALX A;  4UM3 S;  2XQ3 A;  4TWD A;  2XNU A;  3UQ4 A;  3UU4 A;  4QAA A;  2ZJU A;  4NPP A;  4UM3 A;  5J0Z A;  3SQ6 A;  3TLS A;  3WTO A;  2Y7Y A;  4TWF A;  5L4H A;  4IL9 A;  1UW6 A;  2PGZ A;  5KE4 A;  3SQ9 A;  3ZKR A;  5J5G A;  4ILB A;  4ILA A;  4QH4 A;  4XHE A;  4ZJS A;  3U8J A;  4UM1 A;  3WTM A;  5HEH A;  5JME A;  3GUA A;  4HFE A;  4ZZB A;  4QAB A;  5LXB A;  3WTI A;  5BP0 A;  2Y57 A;  2BG9 B;  2YME A;  2XNT A;  3RI5 A;  2BJ0 A;  2XQ9 A;  5BRX A;  3C79 A;  5J5F A;  4LMJ A;  2X00 A;  5HEJ A;  3TLT A;  4Z91 A;  2XQ7 A;  3P50 A;  3UU5 A;  2W8F A;  2PH9 A;  5J5H A;  3UU8 A;  2X00 D;  4UM3 P;  3EAM A;  2BYP A;  2Y56 A;  4TNW A;  5BW2 A;  2UZ6 A;  4X5T A;  2WZY A;  2BG9 E;  3WTL A;  4UY2 A;  4BQT A;  3U8K A;  3JAE A;  3UU3 A;  3TLU A;  5TVC A;  5AFM B;  5L47 A;  5HEO A;  1UX2 A;  2XQA A;  3UU6 A;  3JAD A;  4BFQ A;  3WTH A;  4DBM A;  3U8N A;  3EHZ A;  4Z90 A;  3WTN A;  4FRR A;  5HEU A;  4LMK A;  5CO5 A;  4ILC A;  2WNL A;  4HQP A;  5AFH A;  2Y58 A;  4ZK4 A;  5AFJ A;  4HFI A;  2XQ6 A;  5AFK A;  2YKS A;  3T4M A;  5CFB A;  2QC1 B;  4ZZC A;  3RIF A;  5KZU A;  4EZ1 A;  4QH1 A;  4HFD A;  5HCJ A;  3ZDG A;  4QH5 A;  5AIN A;  3UUB A;  5FJV A;  4AFT A;  3SIO A;  2YOE A;  2WNC A;  3LSV A;  2YN6 A;  3IGQ A;  2BYN A;  2XQ5 A;  3U8L A;  5AFM A;  4ZJT A;  2C9T A;  3ZDH A;  3EI0 A;  4HFB A;  3WIP A;  2XZ5 A;  4UXU A;  2BG9 A;  2BG9 C; 
#chains in the Genus database with same CATH homology
 4COF A;  1UV6 A;  3WTK A;  5J5I A;  4A98 A;  5LG3 A;  2XYS A;  4LML A;  4TNV A;  4ZR6 A;  3WTJ A;  5AFL A;  3JAF A;  4ZK1 A;  4D01 A;  1I9B A;  3SH1 A;  4HFC A;  4ZRU A;  3RHW A;  4QAC A;  3UQ7 A;  3TLW A;  4WV9 A;  5HCM A;  4HFH A;  5IUX A;  2WNJ A;  4NZB A;  3RQU A;  5L4E A;  3RQW A;  4XK9 A;  2YMD A;  3P4W A;  2W8G A;  4B5D A;  4AFH A;  2BR7 A;  5AFN A;  2ZJV A;  4PIR A;  5SYO A;  2BYQ A;  4AFG A;  4F8H A;  2BR8 A;  5HEG A;  3PMZ A;  3TLV A;  2XZ6 A;  2WN9 A;  2BYS A;  3RIA A;  2XQ8 A;  2XQ4 A;  4TWH A;  2BYR A;  4A97 A;  2XNV A;  2VL0 A;  2Y54 A;  4IL4 A;  4IRE A;  3C84 A;  3PEO A;  2XYT A;  3U8M A;  4ALX A;  4UM3 S;  2XQ3 A;  4TWD A;  2XNU A;  3UQ4 A;  3UU4 A;  4QAA A;  2ZJU A;  4NPP A;  4UM3 A;  5J0Z A;  3SQ6 A;  3TLS A;  3WTO A;  2Y7Y A;  4TWF A;  5L4H A;  4IL9 A;  1UW6 A;  2PGZ A;  5KE4 A;  3SQ9 A;  3ZKR A;  5J5G A;  4ILB A;  4ILA A;  4QH4 A;  4XHE A;  4ZJS A;  3U8J A;  4UM1 A;  3WTM A;  5HEH A;  5JME A;  3GUA A;  4HFE A;  4ZZB A;  4QAB A;  5LXB A;  3WTI A;  5BP0 A;  2Y57 A;  2BG9 B;  2YME A;  2XNT A;  3RI5 A;  2BJ0 A;  2XQ9 A;  5BRX A;  3C79 A;  5J5F A;  4LMJ A;  2X00 A;  5HEJ A;  3TLT A;  4Z91 A;  2XQ7 A;  3P50 A;  3UU5 A;  2W8F A;  2PH9 A;  5J5H A;  3UU8 A;  2X00 D;  4UM3 P;  3EAM A;  2BYP A;  2Y56 A;  4TNW A;  5BW2 A;  2UZ6 A;  4X5T A;  2WZY A;  2BG9 E;  3WTL A;  4UY2 A;  4BQT A;  3U8K A;  3JAE A;  3UU3 A;  3TLU A;  5TVC A;  5AFM B;  5L47 A;  5HEO A;  1UX2 A;  2XQA A;  3UU6 A;  3JAD A;  4BFQ A;  3WTH A;  4DBM A;  3U8N A;  3EHZ A;  4Z90 A;  3WTN A;  4FRR A;  5HEU A;  4LMK A;  5CO5 A;  4ILC A;  2WNL A;  4HQP A;  5AFH A;  2Y58 A;  4ZK4 A;  5AFJ A;  4HFI A;  2XQ6 A;  5AFK A;  2YKS A;  3T4M A;  5CFB A;  2QC1 B;  4ZZC A;  3RIF A;  5KZU A;  4EZ1 A;  4QH1 A;  4HFD A;  5HCJ A;  3ZDG A;  4QH5 A;  5AIN A;  3UUB A;  5FJV A;  4AFT A;  3SIO A;  2YOE A;  2WNC A;  3LSV A;  2YN6 A;  3IGQ A;  2BYN A;  2XQ5 A;  3U8L A;  5AFM A;  4ZJT A;  2C9T A;  3ZDH A;  3EI0 A;  4HFB A;  3WIP A;  2XZ5 A;  4UXU A;  2BG9 A;  2BG9 C; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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