2ZJVA

Crystal structure of lymnaea stagnalis acetylcholine binding protein (ls-achbp) complexed with clothianidin
Total Genus 51
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
51
sequence length
208
structure length
208
Chain Sequence
AADRADILYNIRQTSRPDVIPTQRDRPVAVSVSLKFINILEVNEITNEVDVVFWQQTTWSDRTLAWDSSHSPDQVSVPISSLWVPDLAAYNAISKPEVLTPQLARVVSDGEVLYMPSIRQRFSCDVSGVDTESGATCRIKIGSWTHHSREISVDPTTENSDDSEYFSQYSRFEILDVTQKKNSVTYSCCPEAYEDVEVSLNFRKKGRS
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Signaling protein
source organism Lymnaea stagnalis
publication title Crystal structures of Lymnaea stagnalis AChBP in complex with neonicotinoid insecticides imidacloprid and clothianidin
pubmed doi rcsb
molecule keywords Acetylcholine-binding protein
total genus 51
structure length 208
sequence length 208
chains with identical sequence B, C, D, E
ec nomenclature
pdb deposition date 2008-03-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02931 Neur_chan_LBD Neurotransmitter-gated ion-channel ligand binding domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.70.170.10 Mainly Beta Distorted Sandwich Acetylcholine Binding Protein; Chain: A, Neurotransmitter-gated ion-channel ligand-binding domain 2zjvA00
3JAFA 2UZ6A 1UV6A 4HFDA 4ZR6A 5L47A 3U8MA 3SQ9A 2BG9C 2XQ5A 3LSVA 4HFEA 4ZRUA 3C79A 2XZ6A 5KZUA 3RI5A 3WIPA 4ZJTA 3SQ6A 4IREA 3SIOA 3UQ4A 2XQ9A 4FRRA 4UM3S 4IL4A 5AINA 4HFHA 3UUBA 5HCMA 2BR8A 3TLWA 2Y7YA 3UU3A 3T4MA 5AFKA 1I9BA 2BYNA 4TNWA 5HEGA 3WTLA 2Y54A 3EI0A 4TWDA 4PIRA 2WN9A 2WNLA 2Y56A 4DBMA 5L4HA 4WV9A 5AFHA 3IGQA 2BYPA 2BG9A 2XZ5A 3TLTA 5AFMA 2YMEA 4QH4A 4TNVA 5IUXA 1UW6A 4UM3A 2WZYA 4ILBA 3U8JA 5HEUA 4QAAA 3RQWA 4D01A 2YKSA 4HFCA 4COFA 4LMJA 3WTHA 5KE4A 3C84A 3JAEA 5J0ZA 4Z90A 3TLVA 4XHEA 5J5GA 3UU8A 4X5TA 3TLUA 3PEOA 4XK9A 3ZKRA 3WTOA 4NPPA 2C9TA 4TWFA 3SH1A 3RIFA 4F8HA 4IL9A 4LMKA 5LG3A 5AFNA 4HFBA 5SYOA 2BR7A 3ZDGA 3P4WA 2ZJUA 5TVCA 4UY2A 2XQAA 4ZZBA 3TLSA 5BRXA 2BJ0A 3WTIA 4BFQA 3UU4A 4ZK1A 2BG9B 2BYRA 3U8LA 4ZZCA 4AFTA 2Y57A 5HEJA 2ZJVA 4UXUA 5HCJA 4NZBA 3EAMA 2XNTA 3WTKA 2X00D 4EZ1A 4HQPA 5J5HA 2BYQA 1UX2A 2BG9E 3JADA 3PMZA 2XQ6A 5AFJA 3WTJA 5JMEA 3UQ7A 2XNUA 4UM1A 4TWHA 3ZDHA 5BP0A 4QH1A 2PGZA 4QACA 5CO5A 2XYTA 4ZK4A 5LXBA 4LMLA 3RQUA 3U8NA 4ZJSA 3RHWA 5CFBA 4ILCA 2XQ3A 4B5DA 2PH9A 5J5IA 3UU6A 2W8FA 2YMDA 3UU5A 5J5FA 2XQ8A 2WNJA 4ALXA 2YN6A 3WTNA 4HFIA 2W8GA 4QABA 5AFMB 5HEHA 5HEOA 5BW2A 2WNCA 2XQ4A 2YOEA 2XYSA 4A97A 2BYSA 3P50A 3U8KA 4BQTA 2Y58A 3GUAA 5FJVA 2XQ7A 4QH5A 4A98A 2VL0A 3EHZA 4UM3P 4AFHA 4ILAA 2XNVA 2X00A 5AFLA 2QC1B 4AFGA 5L4EA 3WTMA 3RIAA 4Z91A
chains in the Genus database with same CATH superfamily
3JAFA 2UZ6A 1UV6A 4HFDA 4ZR6A 5L47A 3U8MA 3SQ9A 2BG9C 2XQ5A 3LSVA 4HFEA 4ZRUA 3C79A 2XZ6A 5KZUA 3RI5A 3WIPA 4ZJTA 3SQ6A 4IREA 3SIOA 3UQ4A 2XQ9A 4FRRA 4UM3S 4IL4A 5AINA 4HFHA 3UUBA 5HCMA 2BR8A 3TLWA 2Y7YA 3UU3A 3T4MA 5AFKA 1I9BA 2BYNA 4TNWA 5HEGA 3WTLA 2Y54A 3EI0A 4TWDA 4PIRA 2WN9A 2WNLA 2Y56A 4DBMA 5L4HA 4WV9A 5AFHA 3IGQA 2BYPA 2BG9A 2XZ5A 3TLTA 5AFMA 2YMEA 4QH4A 4TNVA 5IUXA 1UW6A 4UM3A 2WZYA 4ILBA 3U8JA 5HEUA 4QAAA 3RQWA 4D01A 2YKSA 4HFCA 4COFA 4LMJA 3WTHA 5KE4A 3C84A 3JAEA 5J0ZA 4Z90A 3TLVA 4XHEA 5J5GA 3UU8A 4X5TA 3TLUA 3PEOA 4XK9A 3ZKRA 3WTOA 4NPPA 2C9TA 4TWFA 3SH1A 3RIFA 4F8HA 4IL9A 4LMKA 5LG3A 5AFNA 4HFBA 5SYOA 2BR7A 3ZDGA 3P4WA 2ZJUA 5TVCA 4UY2A 2XQAA 4ZZBA 3TLSA 5BRXA 2BJ0A 3WTIA 4BFQA 3UU4A 4ZK1A 2BG9B 2BYRA 3U8LA 4ZZCA 4AFTA 2Y57A 5HEJA 2ZJVA 4UXUA 5HCJA 4NZBA 3EAMA 2XNTA 3WTKA 2X00D 4EZ1A 4HQPA 5J5HA 2BYQA 1UX2A 2BG9E 3JADA 3PMZA 2XQ6A 5AFJA 3WTJA 5JMEA 3UQ7A 2XNUA 4UM1A 4TWHA 3ZDHA 5BP0A 4QH1A 2PGZA 4QACA 5CO5A 2XYTA 4ZK4A 5LXBA 4LMLA 3RQUA 3U8NA 4ZJSA 3RHWA 5CFBA 4ILCA 2XQ3A 4B5DA 2PH9A 5J5IA 3UU6A 2W8FA 2YMDA 3UU5A 5J5FA 2XQ8A 2WNJA 4ALXA 2YN6A 3WTNA 4HFIA 2W8GA 4QABA 5AFMB 5HEHA 5HEOA 5BW2A 2WNCA 2XQ4A 2YOEA 2XYSA 4A97A 2BYSA 3P50A 3U8KA 4BQTA 2Y58A 3GUAA 5FJVA 2XQ7A 4QH5A 4A98A 2VL0A 3EHZA 4UM3P 4AFHA 4ILAA 2XNVA 2X00A 5AFLA 2QC1B 4AFGA 5L4EA 3WTMA 3RIAA 4Z91A
chains in the Genus database with same CATH topology
3JAFA 2UZ6A 1UV6A 4HFDA 4ZR6A 5L47A 3U8MA 3SQ9A 2BG9C 2XQ5A 3LSVA 4HFEA 4ZRUA 3C79A 2XZ6A 5KZUA 3RI5A 3WIPA 4ZJTA 3SQ6A 4IREA 3SIOA 3UQ4A 2XQ9A 4FRRA 4UM3S 4IL4A 5AINA 4HFHA 3UUBA 5HCMA 2BR8A 3TLWA 2Y7YA 3UU3A 3T4MA 5AFKA 1I9BA 2BYNA 4TNWA 5HEGA 3WTLA 2Y54A 3EI0A 4TWDA 4PIRA 2WN9A 2WNLA 2Y56A 4DBMA 5L4HA 4WV9A 5AFHA 3IGQA 2BYPA 2BG9A 2XZ5A 3TLTA 5AFMA 2YMEA 4QH4A 4TNVA 5IUXA 1UW6A 4UM3A 2WZYA 4ILBA 3U8JA 5HEUA 4QAAA 3RQWA 4D01A 2YKSA 4HFCA 4COFA 4LMJA 3WTHA 5KE4A 3C84A 3JAEA 5J0ZA 4Z90A 3TLVA 4XHEA 5J5GA 3UU8A 4X5TA 3TLUA 3PEOA 4XK9A 3ZKRA 3WTOA 4NPPA 2C9TA 4TWFA 3SH1A 3RIFA 4F8HA 4IL9A 4LMKA 5LG3A 5AFNA 4HFBA 5SYOA 2BR7A 3ZDGA 3P4WA 2ZJUA 5TVCA 4UY2A 2XQAA 4ZZBA 3TLSA 5BRXA 2BJ0A 3WTIA 4BFQA 3UU4A 4ZK1A 2BG9B 2BYRA 3U8LA 4ZZCA 4AFTA 2Y57A 5HEJA 2ZJVA 4UXUA 5HCJA 4NZBA 3EAMA 2XNTA 3WTKA 2X00D 4EZ1A 4HQPA 5J5HA 2BYQA 1UX2A 2BG9E 3JADA 3PMZA 2XQ6A 5AFJA 3WTJA 5JMEA 3UQ7A 2XNUA 4UM1A 4TWHA 3ZDHA 5BP0A 4QH1A 2PGZA 4QACA 5CO5A 2XYTA 4ZK4A 5LXBA 4LMLA 3RQUA 3U8NA 4ZJSA 3RHWA 5CFBA 4ILCA 2XQ3A 4B5DA 2PH9A 5J5IA 3UU6A 2W8FA 2YMDA 3UU5A 5J5FA 2XQ8A 2WNJA 4ALXA 2YN6A 3WTNA 4HFIA 2W8GA 4QABA 5AFMB 5HEHA 5HEOA 5BW2A 2WNCA 2XQ4A 2YOEA 2XYSA 4A97A 2BYSA 3P50A 3U8KA 4BQTA 2Y58A 3GUAA 5FJVA 2XQ7A 4QH5A 4A98A 2VL0A 3EHZA 4UM3P 4AFHA 4ILAA 2XNVA 2X00A 5AFLA 2QC1B 4AFGA 5L4EA 3WTMA 3RIAA 4Z91A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3JAF A;  2UZ6 A;  1UV6 A;  4HFD A;  4ZR6 A;  5L47 A;  3U8M A;  3SQ9 A;  2BG9 C;  2XQ5 A;  3LSV A;  4HFE A;  4ZRU A;  3C79 A;  2XZ6 A;  5KZU A;  3RI5 A;  3WIP A;  4ZJT A;  3SQ6 A;  4IRE A;  3SIO A;  3UQ4 A;  2XQ9 A;  4FRR A;  4UM3 S;  4IL4 A;  5AIN A;  4HFH A;  3UUB A;  5HCM A;  2BR8 A;  3TLW A;  2Y7Y A;  3UU3 A;  3T4M A;  5AFK A;  1I9B A;  2BYN A;  4TNW A;  5HEG A;  3WTL A;  2Y54 A;  3EI0 A;  4TWD A;  4PIR A;  2WN9 A;  2WNL A;  2Y56 A;  4DBM A;  5L4H A;  4WV9 A;  5AFH A;  3IGQ A;  2BYP A;  2BG9 A;  2XZ5 A;  3TLT A;  5AFM A;  2YME A;  4QH4 A;  4TNV A;  5IUX A;  1UW6 A;  4UM3 A;  2WZY A;  4ILB A;  3U8J A;  5HEU A;  4QAA A;  3RQW A;  4D01 A;  2YKS A;  4HFC A;  4COF A;  4LMJ A;  3WTH A;  5KE4 A;  3C84 A;  3JAE A;  5J0Z A;  4Z90 A;  3TLV A;  4XHE A;  5J5G A;  3UU8 A;  4X5T A;  3TLU A;  3PEO A;  4XK9 A;  3ZKR A;  3WTO A;  4NPP A;  2C9T A;  4TWF A;  3SH1 A;  3RIF A;  4F8H A;  4IL9 A;  4LMK A;  5LG3 A;  5AFN A;  4HFB A;  5SYO A;  2BR7 A;  3ZDG A;  3P4W A;  2ZJU A;  5TVC A;  4UY2 A;  2XQA A;  4ZZB A;  3TLS A;  5BRX A;  2BJ0 A;  3WTI A;  4BFQ A;  3UU4 A;  4ZK1 A;  2BG9 B;  2BYR A;  3U8L A;  4ZZC A;  4AFT A;  2Y57 A;  5HEJ A;  2ZJV A;  4UXU A;  5HCJ A;  4NZB A;  3EAM A;  2XNT A;  3WTK A;  2X00 D;  4EZ1 A;  4HQP A;  5J5H A;  2BYQ A;  1UX2 A;  2BG9 E;  3JAD A;  3PMZ A;  2XQ6 A;  5AFJ A;  3WTJ A;  5JME A;  3UQ7 A;  2XNU A;  4UM1 A;  4TWH A;  3ZDH A;  5BP0 A;  4QH1 A;  2PGZ A;  4QAC A;  5CO5 A;  2XYT A;  4ZK4 A;  5LXB A;  4LML A;  3RQU A;  3U8N A;  4ZJS A;  3RHW A;  5CFB A;  4ILC A;  2XQ3 A;  4B5D A;  2PH9 A;  5J5I A;  3UU6 A;  2W8F A;  2YMD A;  3UU5 A;  5J5F A;  2XQ8 A;  2WNJ A;  4ALX A;  2YN6 A;  3WTN A;  4HFI A;  2W8G A;  4QAB A;  5AFM B;  5HEH A;  5HEO A;  5BW2 A;  2WNC A;  2XQ4 A;  2YOE A;  2XYS A;  4A97 A;  2BYS A;  3P50 A;  3U8K A;  4BQT A;  2Y58 A;  3GUA A;  5FJV A;  2XQ7 A;  4QH5 A;  4A98 A;  2VL0 A;  3EHZ A;  4UM3 P;  4AFH A;  4ILA A;  2XNV A;  2X00 A;  5AFL A;  2QC1 B;  4AFG A;  5L4E A;  3WTM A;  3RIA A;  4Z91 A; 
#chains in the Genus database with same CATH topology
 3JAF A;  2UZ6 A;  1UV6 A;  4HFD A;  4ZR6 A;  5L47 A;  3U8M A;  3SQ9 A;  2BG9 C;  2XQ5 A;  3LSV A;  4HFE A;  4ZRU A;  3C79 A;  2XZ6 A;  5KZU A;  3RI5 A;  3WIP A;  4ZJT A;  3SQ6 A;  4IRE A;  3SIO A;  3UQ4 A;  2XQ9 A;  4FRR A;  4UM3 S;  4IL4 A;  5AIN A;  4HFH A;  3UUB A;  5HCM A;  2BR8 A;  3TLW A;  2Y7Y A;  3UU3 A;  3T4M A;  5AFK A;  1I9B A;  2BYN A;  4TNW A;  5HEG A;  3WTL A;  2Y54 A;  3EI0 A;  4TWD A;  4PIR A;  2WN9 A;  2WNL A;  2Y56 A;  4DBM A;  5L4H A;  4WV9 A;  5AFH A;  3IGQ A;  2BYP A;  2BG9 A;  2XZ5 A;  3TLT A;  5AFM A;  2YME A;  4QH4 A;  4TNV A;  5IUX A;  1UW6 A;  4UM3 A;  2WZY A;  4ILB A;  3U8J A;  5HEU A;  4QAA A;  3RQW A;  4D01 A;  2YKS A;  4HFC A;  4COF A;  4LMJ A;  3WTH A;  5KE4 A;  3C84 A;  3JAE A;  5J0Z A;  4Z90 A;  3TLV A;  4XHE A;  5J5G A;  3UU8 A;  4X5T A;  3TLU A;  3PEO A;  4XK9 A;  3ZKR A;  3WTO A;  4NPP A;  2C9T A;  4TWF A;  3SH1 A;  3RIF A;  4F8H A;  4IL9 A;  4LMK A;  5LG3 A;  5AFN A;  4HFB A;  5SYO A;  2BR7 A;  3ZDG A;  3P4W A;  2ZJU A;  5TVC A;  4UY2 A;  2XQA A;  4ZZB A;  3TLS A;  5BRX A;  2BJ0 A;  3WTI A;  4BFQ A;  3UU4 A;  4ZK1 A;  2BG9 B;  2BYR A;  3U8L A;  4ZZC A;  4AFT A;  2Y57 A;  5HEJ A;  2ZJV A;  4UXU A;  5HCJ A;  4NZB A;  3EAM A;  2XNT A;  3WTK A;  2X00 D;  4EZ1 A;  4HQP A;  5J5H A;  2BYQ A;  1UX2 A;  2BG9 E;  3JAD A;  3PMZ A;  2XQ6 A;  5AFJ A;  3WTJ A;  5JME A;  3UQ7 A;  2XNU A;  4UM1 A;  4TWH A;  3ZDH A;  5BP0 A;  4QH1 A;  2PGZ A;  4QAC A;  5CO5 A;  2XYT A;  4ZK4 A;  5LXB A;  4LML A;  3RQU A;  3U8N A;  4ZJS A;  3RHW A;  5CFB A;  4ILC A;  2XQ3 A;  4B5D A;  2PH9 A;  5J5I A;  3UU6 A;  2W8F A;  2YMD A;  3UU5 A;  5J5F A;  2XQ8 A;  2WNJ A;  4ALX A;  2YN6 A;  3WTN A;  4HFI A;  2W8G A;  4QAB A;  5AFM B;  5HEH A;  5HEO A;  5BW2 A;  2WNC A;  2XQ4 A;  2YOE A;  2XYS A;  4A97 A;  2BYS A;  3P50 A;  3U8K A;  4BQT A;  2Y58 A;  3GUA A;  5FJV A;  2XQ7 A;  4QH5 A;  4A98 A;  2VL0 A;  3EHZ A;  4UM3 P;  4AFH A;  4ILA A;  2XNV A;  2X00 A;  5AFL A;  2QC1 B;  4AFG A;  5L4E A;  3WTM A;  3RIA A;  4Z91 A; 
#chains in the Genus database with same CATH homology
 3JAF A;  2UZ6 A;  1UV6 A;  4HFD A;  4ZR6 A;  5L47 A;  3U8M A;  3SQ9 A;  2BG9 C;  2XQ5 A;  3LSV A;  4HFE A;  4ZRU A;  3C79 A;  2XZ6 A;  5KZU A;  3RI5 A;  3WIP A;  4ZJT A;  3SQ6 A;  4IRE A;  3SIO A;  3UQ4 A;  2XQ9 A;  4FRR A;  4UM3 S;  4IL4 A;  5AIN A;  4HFH A;  3UUB A;  5HCM A;  2BR8 A;  3TLW A;  2Y7Y A;  3UU3 A;  3T4M A;  5AFK A;  1I9B A;  2BYN A;  4TNW A;  5HEG A;  3WTL A;  2Y54 A;  3EI0 A;  4TWD A;  4PIR A;  2WN9 A;  2WNL A;  2Y56 A;  4DBM A;  5L4H A;  4WV9 A;  5AFH A;  3IGQ A;  2BYP A;  2BG9 A;  2XZ5 A;  3TLT A;  5AFM A;  2YME A;  4QH4 A;  4TNV A;  5IUX A;  1UW6 A;  4UM3 A;  2WZY A;  4ILB A;  3U8J A;  5HEU A;  4QAA A;  3RQW A;  4D01 A;  2YKS A;  4HFC A;  4COF A;  4LMJ A;  3WTH A;  5KE4 A;  3C84 A;  3JAE A;  5J0Z A;  4Z90 A;  3TLV A;  4XHE A;  5J5G A;  3UU8 A;  4X5T A;  3TLU A;  3PEO A;  4XK9 A;  3ZKR A;  3WTO A;  4NPP A;  2C9T A;  4TWF A;  3SH1 A;  3RIF A;  4F8H A;  4IL9 A;  4LMK A;  5LG3 A;  5AFN A;  4HFB A;  5SYO A;  2BR7 A;  3ZDG A;  3P4W A;  2ZJU A;  5TVC A;  4UY2 A;  2XQA A;  4ZZB A;  3TLS A;  5BRX A;  2BJ0 A;  3WTI A;  4BFQ A;  3UU4 A;  4ZK1 A;  2BG9 B;  2BYR A;  3U8L A;  4ZZC A;  4AFT A;  2Y57 A;  5HEJ A;  2ZJV A;  4UXU A;  5HCJ A;  4NZB A;  3EAM A;  2XNT A;  3WTK A;  2X00 D;  4EZ1 A;  4HQP A;  5J5H A;  2BYQ A;  1UX2 A;  2BG9 E;  3JAD A;  3PMZ A;  2XQ6 A;  5AFJ A;  3WTJ A;  5JME A;  3UQ7 A;  2XNU A;  4UM1 A;  4TWH A;  3ZDH A;  5BP0 A;  4QH1 A;  2PGZ A;  4QAC A;  5CO5 A;  2XYT A;  4ZK4 A;  5LXB A;  4LML A;  3RQU A;  3U8N A;  4ZJS A;  3RHW A;  5CFB A;  4ILC A;  2XQ3 A;  4B5D A;  2PH9 A;  5J5I A;  3UU6 A;  2W8F A;  2YMD A;  3UU5 A;  5J5F A;  2XQ8 A;  2WNJ A;  4ALX A;  2YN6 A;  3WTN A;  4HFI A;  2W8G A;  4QAB A;  5AFM B;  5HEH A;  5HEO A;  5BW2 A;  2WNC A;  2XQ4 A;  2YOE A;  2XYS A;  4A97 A;  2BYS A;  3P50 A;  3U8K A;  4BQT A;  2Y58 A;  3GUA A;  5FJV A;  2XQ7 A;  4QH5 A;  4A98 A;  2VL0 A;  3EHZ A;  4UM3 P;  4AFH A;  4ILA A;  2XNV A;  2X00 A;  5AFL A;  2QC1 B;  4AFG A;  5L4E A;  3WTM A;  3RIA A;  4Z91 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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