2XNTA

Acetylcholine binding protein (achbp) as template for hierarchical in silico screening procedures to identify structurally novel ligands for the nicotinic receptors
Total Genus 47
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
47
sequence length
205
structure length
205
Chain Sequence
QANLMRLKSDLFNRSPMYPGPTKDDPLTVTLGFTLQDIVKVDSSTNEVDLVYYEQQRWKLNSLMWDPNEYGNITDFRTSAADIWTPDITAYSSTRPVQVLSPQIAVVTHDGSVMFIPAQRLSFMCDPTGVDSEEGVTCAVKFGSWVYSGFEIDLKTDTDQVDLSSYYASSKYEILSATQTRQVQHYSCCPEPYIDVNLVVKFRER
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Receptor
source organism Aplysia californica
publication title Acetylcholine Binding Protein (Achbp) as Template for Hierarchical in Silico Screening Procedures to Identify Structurally Novel Ligands for the Nicotinic Receptors.
pubmed doi rcsb
molecule keywords SOLUBLE ACETYLCHOLINE RECEPTOR
total genus 47
structure length 205
sequence length 205
chains with identical sequence B, C, D, E, F, G, H, I, J
ec nomenclature
pdb deposition date 2010-08-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02931 Neur_chan_LBD Neurotransmitter-gated ion-channel ligand binding domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.70.170.10 Mainly Beta Distorted Sandwich Acetylcholine Binding Protein; Chain: A, Neurotransmitter-gated ion-channel ligand-binding domain 2xntA00
2BJ0A 2XQ8A 5AFMA 5L47A 4A98A 4ILBA 4UM3S 4D01A 2W8FA 4HFCA 3GUAA 3PEOA 5IUXA 4UM3P 4ZK4A 2YMEA 2Y54A 5HEOA 4UY2A 2XYSA 5HEGA 3SIOA 2XNTA 2W8GA 3EI0A 4F8HA 3TLWA 2YMDA 2BYQA 3SH1A 4FRRA 3TLSA 4LMKA 2BG9C 2WNJA 3UQ4A 3TLVA 5L4HA 2UZ6A 3JADA 3U8KA 4IL4A 4TWDA 3JAEA 4AFGA 4COFA 5BP0A 2XQ7A 5AFKA 2BG9B 5HCJA 4ILAA 5AFLA 2X00A 4NPPA 5AFNA 1UX2A 2C9TA 3JAFA 3U8LA 4Z91A 2XNVA 4ZRUA 3RHWA 4ALXA 4XK9A 4UM1A 5L4EA 5HEUA 5J0ZA 2Y7YA 4AFTA 4ILCA 4ZK1A 4DBMA 5CFBA 4Z90A 2BR8A 2WZYA 5TVCA 5AFJA 2XQ5A 4UXUA 4WV9A 5FJVA 5AFMB 5LG3A 3LSVA 3UU8A 2YOEA 4QH4A 4BQTA 2XYTA 4HFHA 4HFEA 4B5DA 4PIRA 4EZ1A 2YN6A 5J5IA 2BYPA 3WTIA 4IREA 5HCMA 3P4WA 2BYSA 4ZJTA 2PGZA 3UUBA 4QH1A 2Y57A 4HFIA 2WNCA 5KE4A 2VL0A 2XZ5A 3UU3A 3RI5A 4HQPA 4HFBA 3WTNA 3U8MA 3ZKRA 3UQ7A 3UU4A 2Y56A 2ZJVA 3WIPA 2XQAA 4TWHA 3WTMA 4BFQA 5HEJA 3T4MA 3P50A 3U8JA 1UW6A 4NZBA 2X00D 3PMZA 4AFHA 3ZDHA 5JMEA 4ZJSA 3TLUA 4TWFA 2XQ3A 2WN9A 4ZZBA 2XQ9A 4X5TA 2BR7A 4XHEA 2YKSA 4ZR6A 3RQUA 2BYRA 2QC1B 3SQ9A 2XNUA 4QAAA 5BW2A 3WTJA 2XQ6A 3WTOA 5AINA 2BG9E 3RIFA 4QACA 5J5GA 3TLTA 4TNVA 3C84A 4ZZCA 3ZDGA 3UU5A 3WTKA 5J5FA 3SQ6A 3RIAA 3WTHA 4QH5A 2ZJUA 4QABA 4A97A 5HEHA 5LXBA 5J5HA 2BG9A 2XQ4A 5CO5A 2PH9A 5SYOA 3IGQA 4TNWA 1UV6A 5AFHA 1I9BA 3UU6A 3EAMA 5KZUA 2Y58A 4HFDA 3WTLA 3RQWA 4IL9A 3U8NA 4LMLA 3EHZA 2BYNA 4UM3A 4LMJA 5BRXA 2XZ6A 2WNLA 3C79A
chains in the Genus database with same CATH superfamily
2BJ0A 2XQ8A 5AFMA 5L47A 4A98A 4ILBA 4UM3S 4D01A 2W8FA 4HFCA 3GUAA 3PEOA 5IUXA 4UM3P 4ZK4A 2YMEA 2Y54A 5HEOA 4UY2A 2XYSA 5HEGA 3SIOA 2XNTA 2W8GA 3EI0A 4F8HA 3TLWA 2YMDA 2BYQA 3SH1A 4FRRA 3TLSA 4LMKA 2BG9C 2WNJA 3UQ4A 3TLVA 5L4HA 2UZ6A 3JADA 3U8KA 4IL4A 4TWDA 3JAEA 4AFGA 4COFA 5BP0A 2XQ7A 5AFKA 2BG9B 5HCJA 4ILAA 5AFLA 2X00A 4NPPA 5AFNA 1UX2A 2C9TA 3JAFA 3U8LA 4Z91A 2XNVA 4ZRUA 3RHWA 4ALXA 4XK9A 4UM1A 5L4EA 5HEUA 5J0ZA 2Y7YA 4AFTA 4ILCA 4ZK1A 4DBMA 5CFBA 4Z90A 2BR8A 2WZYA 5TVCA 5AFJA 2XQ5A 4UXUA 4WV9A 5FJVA 5AFMB 5LG3A 3LSVA 3UU8A 2YOEA 4QH4A 4BQTA 2XYTA 4HFHA 4HFEA 4B5DA 4PIRA 4EZ1A 2YN6A 5J5IA 2BYPA 3WTIA 4IREA 5HCMA 3P4WA 2BYSA 4ZJTA 2PGZA 3UUBA 4QH1A 2Y57A 4HFIA 2WNCA 5KE4A 2VL0A 2XZ5A 3UU3A 3RI5A 4HQPA 4HFBA 3WTNA 3U8MA 3ZKRA 3UQ7A 3UU4A 2Y56A 2ZJVA 3WIPA 2XQAA 4TWHA 3WTMA 4BFQA 5HEJA 3T4MA 3P50A 3U8JA 1UW6A 4NZBA 2X00D 3PMZA 4AFHA 3ZDHA 5JMEA 4ZJSA 3TLUA 4TWFA 2XQ3A 2WN9A 4ZZBA 2XQ9A 4X5TA 2BR7A 4XHEA 2YKSA 4ZR6A 3RQUA 2BYRA 2QC1B 3SQ9A 2XNUA 4QAAA 5BW2A 3WTJA 2XQ6A 3WTOA 5AINA 2BG9E 3RIFA 4QACA 5J5GA 3TLTA 4TNVA 3C84A 4ZZCA 3ZDGA 3UU5A 3WTKA 5J5FA 3SQ6A 3RIAA 3WTHA 4QH5A 2ZJUA 4QABA 4A97A 5HEHA 5LXBA 5J5HA 2BG9A 2XQ4A 5CO5A 2PH9A 5SYOA 3IGQA 4TNWA 1UV6A 5AFHA 1I9BA 3UU6A 3EAMA 5KZUA 2Y58A 4HFDA 3WTLA 3RQWA 4IL9A 3U8NA 4LMLA 3EHZA 2BYNA 4UM3A 4LMJA 5BRXA 2XZ6A 2WNLA 3C79A
chains in the Genus database with same CATH topology
2BJ0A 2XQ8A 5AFMA 5L47A 4A98A 4ILBA 4UM3S 4D01A 2W8FA 4HFCA 3GUAA 3PEOA 5IUXA 4UM3P 4ZK4A 2YMEA 2Y54A 5HEOA 4UY2A 2XYSA 5HEGA 3SIOA 2XNTA 2W8GA 3EI0A 4F8HA 3TLWA 2YMDA 2BYQA 3SH1A 4FRRA 3TLSA 4LMKA 2BG9C 2WNJA 3UQ4A 3TLVA 5L4HA 2UZ6A 3JADA 3U8KA 4IL4A 4TWDA 3JAEA 4AFGA 4COFA 5BP0A 2XQ7A 5AFKA 2BG9B 5HCJA 4ILAA 5AFLA 2X00A 4NPPA 5AFNA 1UX2A 2C9TA 3JAFA 3U8LA 4Z91A 2XNVA 4ZRUA 3RHWA 4ALXA 4XK9A 4UM1A 5L4EA 5HEUA 5J0ZA 2Y7YA 4AFTA 4ILCA 4ZK1A 4DBMA 5CFBA 4Z90A 2BR8A 2WZYA 5TVCA 5AFJA 2XQ5A 4UXUA 4WV9A 5FJVA 5AFMB 5LG3A 3LSVA 3UU8A 2YOEA 4QH4A 4BQTA 2XYTA 4HFHA 4HFEA 4B5DA 4PIRA 4EZ1A 2YN6A 5J5IA 2BYPA 3WTIA 4IREA 5HCMA 3P4WA 2BYSA 4ZJTA 2PGZA 3UUBA 4QH1A 2Y57A 4HFIA 2WNCA 5KE4A 2VL0A 2XZ5A 3UU3A 3RI5A 4HQPA 4HFBA 3WTNA 3U8MA 3ZKRA 3UQ7A 3UU4A 2Y56A 2ZJVA 3WIPA 2XQAA 4TWHA 3WTMA 4BFQA 5HEJA 3T4MA 3P50A 3U8JA 1UW6A 4NZBA 2X00D 3PMZA 4AFHA 3ZDHA 5JMEA 4ZJSA 3TLUA 4TWFA 2XQ3A 2WN9A 4ZZBA 2XQ9A 4X5TA 2BR7A 4XHEA 2YKSA 4ZR6A 3RQUA 2BYRA 2QC1B 3SQ9A 2XNUA 4QAAA 5BW2A 3WTJA 2XQ6A 3WTOA 5AINA 2BG9E 3RIFA 4QACA 5J5GA 3TLTA 4TNVA 3C84A 4ZZCA 3ZDGA 3UU5A 3WTKA 5J5FA 3SQ6A 3RIAA 3WTHA 4QH5A 2ZJUA 4QABA 4A97A 5HEHA 5LXBA 5J5HA 2BG9A 2XQ4A 5CO5A 2PH9A 5SYOA 3IGQA 4TNWA 1UV6A 5AFHA 1I9BA 3UU6A 3EAMA 5KZUA 2Y58A 4HFDA 3WTLA 3RQWA 4IL9A 3U8NA 4LMLA 3EHZA 2BYNA 4UM3A 4LMJA 5BRXA 2XZ6A 2WNLA 3C79A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2BJ0 A;  2XQ8 A;  5AFM A;  5L47 A;  4A98 A;  4ILB A;  4UM3 S;  4D01 A;  2W8F A;  4HFC A;  3GUA A;  3PEO A;  5IUX A;  4UM3 P;  4ZK4 A;  2YME A;  2Y54 A;  5HEO A;  4UY2 A;  2XYS A;  5HEG A;  3SIO A;  2XNT A;  2W8G A;  3EI0 A;  4F8H A;  3TLW A;  2YMD A;  2BYQ A;  3SH1 A;  4FRR A;  3TLS A;  4LMK A;  2BG9 C;  2WNJ A;  3UQ4 A;  3TLV A;  5L4H A;  2UZ6 A;  3JAD A;  3U8K A;  4IL4 A;  4TWD A;  3JAE A;  4AFG A;  4COF A;  5BP0 A;  2XQ7 A;  5AFK A;  2BG9 B;  5HCJ A;  4ILA A;  5AFL A;  2X00 A;  4NPP A;  5AFN A;  1UX2 A;  2C9T A;  3JAF A;  3U8L A;  4Z91 A;  2XNV A;  4ZRU A;  3RHW A;  4ALX A;  4XK9 A;  4UM1 A;  5L4E A;  5HEU A;  5J0Z A;  2Y7Y A;  4AFT A;  4ILC A;  4ZK1 A;  4DBM A;  5CFB A;  4Z90 A;  2BR8 A;  2WZY A;  5TVC A;  5AFJ A;  2XQ5 A;  4UXU A;  4WV9 A;  5FJV A;  5AFM B;  5LG3 A;  3LSV A;  3UU8 A;  2YOE A;  4QH4 A;  4BQT A;  2XYT A;  4HFH A;  4HFE A;  4B5D A;  4PIR A;  4EZ1 A;  2YN6 A;  5J5I A;  2BYP A;  3WTI A;  4IRE A;  5HCM A;  3P4W A;  2BYS A;  4ZJT A;  2PGZ A;  3UUB A;  4QH1 A;  2Y57 A;  4HFI A;  2WNC A;  5KE4 A;  2VL0 A;  2XZ5 A;  3UU3 A;  3RI5 A;  4HQP A;  4HFB A;  3WTN A;  3U8M A;  3ZKR A;  3UQ7 A;  3UU4 A;  2Y56 A;  2ZJV A;  3WIP A;  2XQA A;  4TWH A;  3WTM A;  4BFQ A;  5HEJ A;  3T4M A;  3P50 A;  3U8J A;  1UW6 A;  4NZB A;  2X00 D;  3PMZ A;  4AFH A;  3ZDH A;  5JME A;  4ZJS A;  3TLU A;  4TWF A;  2XQ3 A;  2WN9 A;  4ZZB A;  2XQ9 A;  4X5T A;  2BR7 A;  4XHE A;  2YKS A;  4ZR6 A;  3RQU A;  2BYR A;  2QC1 B;  3SQ9 A;  2XNU A;  4QAA A;  5BW2 A;  3WTJ A;  2XQ6 A;  3WTO A;  5AIN A;  2BG9 E;  3RIF A;  4QAC A;  5J5G A;  3TLT A;  4TNV A;  3C84 A;  4ZZC A;  3ZDG A;  3UU5 A;  3WTK A;  5J5F A;  3SQ6 A;  3RIA A;  3WTH A;  4QH5 A;  2ZJU A;  4QAB A;  4A97 A;  5HEH A;  5LXB A;  5J5H A;  2BG9 A;  2XQ4 A;  5CO5 A;  2PH9 A;  5SYO A;  3IGQ A;  4TNW A;  1UV6 A;  5AFH A;  1I9B A;  3UU6 A;  3EAM A;  5KZU A;  2Y58 A;  4HFD A;  3WTL A;  3RQW A;  4IL9 A;  3U8N A;  4LML A;  3EHZ A;  2BYN A;  4UM3 A;  4LMJ A;  5BRX A;  2XZ6 A;  2WNL A;  3C79 A; 
#chains in the Genus database with same CATH topology
 2BJ0 A;  2XQ8 A;  5AFM A;  5L47 A;  4A98 A;  4ILB A;  4UM3 S;  4D01 A;  2W8F A;  4HFC A;  3GUA A;  3PEO A;  5IUX A;  4UM3 P;  4ZK4 A;  2YME A;  2Y54 A;  5HEO A;  4UY2 A;  2XYS A;  5HEG A;  3SIO A;  2XNT A;  2W8G A;  3EI0 A;  4F8H A;  3TLW A;  2YMD A;  2BYQ A;  3SH1 A;  4FRR A;  3TLS A;  4LMK A;  2BG9 C;  2WNJ A;  3UQ4 A;  3TLV A;  5L4H A;  2UZ6 A;  3JAD A;  3U8K A;  4IL4 A;  4TWD A;  3JAE A;  4AFG A;  4COF A;  5BP0 A;  2XQ7 A;  5AFK A;  2BG9 B;  5HCJ A;  4ILA A;  5AFL A;  2X00 A;  4NPP A;  5AFN A;  1UX2 A;  2C9T A;  3JAF A;  3U8L A;  4Z91 A;  2XNV A;  4ZRU A;  3RHW A;  4ALX A;  4XK9 A;  4UM1 A;  5L4E A;  5HEU A;  5J0Z A;  2Y7Y A;  4AFT A;  4ILC A;  4ZK1 A;  4DBM A;  5CFB A;  4Z90 A;  2BR8 A;  2WZY A;  5TVC A;  5AFJ A;  2XQ5 A;  4UXU A;  4WV9 A;  5FJV A;  5AFM B;  5LG3 A;  3LSV A;  3UU8 A;  2YOE A;  4QH4 A;  4BQT A;  2XYT A;  4HFH A;  4HFE A;  4B5D A;  4PIR A;  4EZ1 A;  2YN6 A;  5J5I A;  2BYP A;  3WTI A;  4IRE A;  5HCM A;  3P4W A;  2BYS A;  4ZJT A;  2PGZ A;  3UUB A;  4QH1 A;  2Y57 A;  4HFI A;  2WNC A;  5KE4 A;  2VL0 A;  2XZ5 A;  3UU3 A;  3RI5 A;  4HQP A;  4HFB A;  3WTN A;  3U8M A;  3ZKR A;  3UQ7 A;  3UU4 A;  2Y56 A;  2ZJV A;  3WIP A;  2XQA A;  4TWH A;  3WTM A;  4BFQ A;  5HEJ A;  3T4M A;  3P50 A;  3U8J A;  1UW6 A;  4NZB A;  2X00 D;  3PMZ A;  4AFH A;  3ZDH A;  5JME A;  4ZJS A;  3TLU A;  4TWF A;  2XQ3 A;  2WN9 A;  4ZZB A;  2XQ9 A;  4X5T A;  2BR7 A;  4XHE A;  2YKS A;  4ZR6 A;  3RQU A;  2BYR A;  2QC1 B;  3SQ9 A;  2XNU A;  4QAA A;  5BW2 A;  3WTJ A;  2XQ6 A;  3WTO A;  5AIN A;  2BG9 E;  3RIF A;  4QAC A;  5J5G A;  3TLT A;  4TNV A;  3C84 A;  4ZZC A;  3ZDG A;  3UU5 A;  3WTK A;  5J5F A;  3SQ6 A;  3RIA A;  3WTH A;  4QH5 A;  2ZJU A;  4QAB A;  4A97 A;  5HEH A;  5LXB A;  5J5H A;  2BG9 A;  2XQ4 A;  5CO5 A;  2PH9 A;  5SYO A;  3IGQ A;  4TNW A;  1UV6 A;  5AFH A;  1I9B A;  3UU6 A;  3EAM A;  5KZU A;  2Y58 A;  4HFD A;  3WTL A;  3RQW A;  4IL9 A;  3U8N A;  4LML A;  3EHZ A;  2BYN A;  4UM3 A;  4LMJ A;  5BRX A;  2XZ6 A;  2WNL A;  3C79 A; 
#chains in the Genus database with same CATH homology
 2BJ0 A;  2XQ8 A;  5AFM A;  5L47 A;  4A98 A;  4ILB A;  4UM3 S;  4D01 A;  2W8F A;  4HFC A;  3GUA A;  3PEO A;  5IUX A;  4UM3 P;  4ZK4 A;  2YME A;  2Y54 A;  5HEO A;  4UY2 A;  2XYS A;  5HEG A;  3SIO A;  2XNT A;  2W8G A;  3EI0 A;  4F8H A;  3TLW A;  2YMD A;  2BYQ A;  3SH1 A;  4FRR A;  3TLS A;  4LMK A;  2BG9 C;  2WNJ A;  3UQ4 A;  3TLV A;  5L4H A;  2UZ6 A;  3JAD A;  3U8K A;  4IL4 A;  4TWD A;  3JAE A;  4AFG A;  4COF A;  5BP0 A;  2XQ7 A;  5AFK A;  2BG9 B;  5HCJ A;  4ILA A;  5AFL A;  2X00 A;  4NPP A;  5AFN A;  1UX2 A;  2C9T A;  3JAF A;  3U8L A;  4Z91 A;  2XNV A;  4ZRU A;  3RHW A;  4ALX A;  4XK9 A;  4UM1 A;  5L4E A;  5HEU A;  5J0Z A;  2Y7Y A;  4AFT A;  4ILC A;  4ZK1 A;  4DBM A;  5CFB A;  4Z90 A;  2BR8 A;  2WZY A;  5TVC A;  5AFJ A;  2XQ5 A;  4UXU A;  4WV9 A;  5FJV A;  5AFM B;  5LG3 A;  3LSV A;  3UU8 A;  2YOE A;  4QH4 A;  4BQT A;  2XYT A;  4HFH A;  4HFE A;  4B5D A;  4PIR A;  4EZ1 A;  2YN6 A;  5J5I A;  2BYP A;  3WTI A;  4IRE A;  5HCM A;  3P4W A;  2BYS A;  4ZJT A;  2PGZ A;  3UUB A;  4QH1 A;  2Y57 A;  4HFI A;  2WNC A;  5KE4 A;  2VL0 A;  2XZ5 A;  3UU3 A;  3RI5 A;  4HQP A;  4HFB A;  3WTN A;  3U8M A;  3ZKR A;  3UQ7 A;  3UU4 A;  2Y56 A;  2ZJV A;  3WIP A;  2XQA A;  4TWH A;  3WTM A;  4BFQ A;  5HEJ A;  3T4M A;  3P50 A;  3U8J A;  1UW6 A;  4NZB A;  2X00 D;  3PMZ A;  4AFH A;  3ZDH A;  5JME A;  4ZJS A;  3TLU A;  4TWF A;  2XQ3 A;  2WN9 A;  4ZZB A;  2XQ9 A;  4X5T A;  2BR7 A;  4XHE A;  2YKS A;  4ZR6 A;  3RQU A;  2BYR A;  2QC1 B;  3SQ9 A;  2XNU A;  4QAA A;  5BW2 A;  3WTJ A;  2XQ6 A;  3WTO A;  5AIN A;  2BG9 E;  3RIF A;  4QAC A;  5J5G A;  3TLT A;  4TNV A;  3C84 A;  4ZZC A;  3ZDG A;  3UU5 A;  3WTK A;  5J5F A;  3SQ6 A;  3RIA A;  3WTH A;  4QH5 A;  2ZJU A;  4QAB A;  4A97 A;  5HEH A;  5LXB A;  5J5H A;  2BG9 A;  2XQ4 A;  5CO5 A;  2PH9 A;  5SYO A;  3IGQ A;  4TNW A;  1UV6 A;  5AFH A;  1I9B A;  3UU6 A;  3EAM A;  5KZU A;  2Y58 A;  4HFD A;  3WTL A;  3RQW A;  4IL9 A;  3U8N A;  4LML A;  3EHZ A;  2BYN A;  4UM3 A;  4LMJ A;  5BRX A;  2XZ6 A;  2WNL A;  3C79 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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