5AFKA

Alpha7-achbp in complex with lobeline and fragment 2
Total Genus 45
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
45
sequence length
205
structure length
205
Chain Sequence
GEFQRKLYKELVKNYNPDVIPTQRDRPVTVYFSLSLLQIMDVDEKNQVVDVVFWLQMSWTDHYLQWNVSEYPGVKQVSVPISSLWVPDLAAYNAISKPEVLTPQLALVNSSGHVQYLPSIRQRFSCDVSGVDTESGATCKLKFGSWTHHSRELDLQMQEADISGYIPYSRFELVGVTQKRSERFYECCKEPYPDVTFTVTFRKKG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transport protein
molecule keywords ACETYLCHOLINE-BINDING PROTEIN, NEURONAL ACETYLCHOLINE RECEPT
publication title Molecular Blueprint of Allosteric Binding Sites in a Homologue of the Agonist-Binding Domain of the Alpha7 Nicotinic Acetylcholine Receptor.
pubmed doi rcsb
source organism Homo sapiens
total genus 45
structure length 205
sequence length 205
chains with identical sequence B, C, D, E
ec nomenclature
pdb deposition date 2015-01-22
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.70.170.10 Mainly Beta Distorted Sandwich Acetylcholine Binding Protein; Chain: A, Neurotransmitter-gated ion-channel ligand-binding domain 5afkA00
3UQ4A 4ZRUA 4XHEA 3TLVA 3UU8A 2YKSA 3WTOA 2BR7A 3EHZA 5J5IA 3U8MA 1UV6A 2UZ6A 2ZJUA 5AFMB 2BYQA 4ALXA 4NPPA 3ZDGA 2BG9A 3U8JA 4XK9A 1UX2A 4TWFA 3ZKRA 3P4WA 3WTKA 5CFBA 2BYRA 2BYSA 3LSVA 3C84A 2W8FA 5FJVA 5HCMA 3RHWA 3WTHA 4F8HA 4HFIA 5HEOA 4UM1A 2XNTA 2X00A 2ZJVA 4AFTA 3RQUA 4ZJSA 5KZUA 2Y58A 4UM3P 3RIFA 4QAAA 4A98A 5SYOA 3UUBA 3SQ9A 2YMDA 4QABA 2XQ4A 4TNVA 5L4HA 4BQTA 5KE4A 4Z90A 4BFQA 5TVCA 4LMLA 2XQ7A 4QACA 2BYPA 5CO5A 3RQWA 3WTLA 4COFA 4ZJTA 2BG9C 4LMJA 4WV9A 2XQAA 3ZDHA 4B5DA 4TWHA 2BG9B 4AFGA 5AFJA 3WTJA 5L47A 4ZZCA 4QH5A 2XYTA 2XQ6A 3PMZA 3TLTA 4HFBA 2WNJA 3SQ6A 3U8LA 1I9BA 2Y56A 3JAEA 5HEHA 3SIOA 2WN9A 4X5TA 4ILCA 3TLUA 4IREA 5LXBA 3TLSA 3UU3A 2BYNA 4LMKA 5BRXA 4ZZBA 4Z91A 4HFDA 2YOEA 4EZ1A 5BP0A 2Y7YA 4IL9A 2XNUA 2XQ5A 2XNVA 2YN6A 2WNCA 3WTMA 4AFHA 4ILAA 5J0ZA 2BR8A 2VL0A 3WIPA 4ZR6A 5HEJA 4UM3S 2PGZA 5HCJA 5L4EA 2PH9A 3EAMA 4DBMA 3JAFA 3SH1A 4FRRA 3UU4A 5LG3A 2WNLA 1UW6A 3RI5A 3UU6A 2XYSA 3PEOA 5IUXA 5AFHA 3U8KA 4ILBA 5AFKA 4D01A 5HEUA 2BG9E 4QH4A 2W8GA 2XQ9A 2X00D 4HFHA 4UY2A 4ZK4A 2BJ0A 2YMEA 3C79A 2WZYA 5HEGA 3RIAA 5AFMA 5J5GA 4TWDA 2XQ8A 3T4MA 2C9TA 3EI0A 4ZK1A 3IGQA 5JMEA 2XZ6A 4HQPA 4A97A 5BW2A 4HFEA 4NZBA 4QH1A 3U8NA 4UXUA 3UQ7A 3UU5A 5J5FA 2QC1B 5AFLA 4TNWA 4UM3A 5J5HA 3GUAA 3WTIA 4IL4A 4PIRA 4HFCA 2Y57A 2XQ3A 3WTNA 3JADA 5AINA 5AFNA 2XZ5A 3TLWA 3P50A 2Y54A
chains in the Genus database with same CATH superfamily
3UQ4A 4ZRUA 4XHEA 3TLVA 3UU8A 2YKSA 3WTOA 2BR7A 3EHZA 5J5IA 3U8MA 1UV6A 2UZ6A 2ZJUA 5AFMB 2BYQA 4ALXA 4NPPA 3ZDGA 2BG9A 3U8JA 4XK9A 1UX2A 4TWFA 3ZKRA 3P4WA 3WTKA 5CFBA 2BYRA 2BYSA 3LSVA 3C84A 2W8FA 5FJVA 5HCMA 3RHWA 3WTHA 4F8HA 4HFIA 5HEOA 4UM1A 2XNTA 2X00A 2ZJVA 4AFTA 3RQUA 4ZJSA 5KZUA 2Y58A 4UM3P 3RIFA 4QAAA 4A98A 5SYOA 3UUBA 3SQ9A 2YMDA 4QABA 2XQ4A 4TNVA 5L4HA 4BQTA 5KE4A 4Z90A 4BFQA 5TVCA 4LMLA 2XQ7A 4QACA 2BYPA 5CO5A 3RQWA 3WTLA 4COFA 4ZJTA 2BG9C 4LMJA 4WV9A 2XQAA 3ZDHA 4B5DA 4TWHA 2BG9B 4AFGA 5AFJA 3WTJA 5L47A 4ZZCA 4QH5A 2XYTA 2XQ6A 3PMZA 3TLTA 4HFBA 2WNJA 3SQ6A 3U8LA 1I9BA 2Y56A 3JAEA 5HEHA 3SIOA 2WN9A 4X5TA 4ILCA 3TLUA 4IREA 5LXBA 3TLSA 3UU3A 2BYNA 4LMKA 5BRXA 4ZZBA 4Z91A 4HFDA 2YOEA 4EZ1A 5BP0A 2Y7YA 4IL9A 2XNUA 2XQ5A 2XNVA 2YN6A 2WNCA 3WTMA 4AFHA 4ILAA 5J0ZA 2BR8A 2VL0A 3WIPA 4ZR6A 5HEJA 4UM3S 2PGZA 5HCJA 5L4EA 2PH9A 3EAMA 4DBMA 3JAFA 3SH1A 4FRRA 3UU4A 5LG3A 2WNLA 1UW6A 3RI5A 3UU6A 2XYSA 3PEOA 5IUXA 5AFHA 3U8KA 4ILBA 5AFKA 4D01A 5HEUA 2BG9E 4QH4A 2W8GA 2XQ9A 2X00D 4HFHA 4UY2A 4ZK4A 2BJ0A 2YMEA 3C79A 2WZYA 5HEGA 3RIAA 5AFMA 5J5GA 4TWDA 2XQ8A 3T4MA 2C9TA 3EI0A 4ZK1A 3IGQA 5JMEA 2XZ6A 4HQPA 4A97A 5BW2A 4HFEA 4NZBA 4QH1A 3U8NA 4UXUA 3UQ7A 3UU5A 5J5FA 2QC1B 5AFLA 4TNWA 4UM3A 5J5HA 3GUAA 3WTIA 4IL4A 4PIRA 4HFCA 2Y57A 2XQ3A 3WTNA 3JADA 5AINA 5AFNA 2XZ5A 3TLWA 3P50A 2Y54A
chains in the Genus database with same CATH topology
3UQ4A 4ZRUA 4XHEA 3TLVA 3UU8A 2YKSA 3WTOA 2BR7A 3EHZA 5J5IA 3U8MA 1UV6A 2UZ6A 2ZJUA 5AFMB 2BYQA 4ALXA 4NPPA 3ZDGA 2BG9A 3U8JA 4XK9A 1UX2A 4TWFA 3ZKRA 3P4WA 3WTKA 5CFBA 2BYRA 2BYSA 3LSVA 3C84A 2W8FA 5FJVA 5HCMA 3RHWA 3WTHA 4F8HA 4HFIA 5HEOA 4UM1A 2XNTA 2X00A 2ZJVA 4AFTA 3RQUA 4ZJSA 5KZUA 2Y58A 4UM3P 3RIFA 4QAAA 4A98A 5SYOA 3UUBA 3SQ9A 2YMDA 4QABA 2XQ4A 4TNVA 5L4HA 4BQTA 5KE4A 4Z90A 4BFQA 5TVCA 4LMLA 2XQ7A 4QACA 2BYPA 5CO5A 3RQWA 3WTLA 4COFA 4ZJTA 2BG9C 4LMJA 4WV9A 2XQAA 3ZDHA 4B5DA 4TWHA 2BG9B 4AFGA 5AFJA 3WTJA 5L47A 4ZZCA 4QH5A 2XYTA 2XQ6A 3PMZA 3TLTA 4HFBA 2WNJA 3SQ6A 3U8LA 1I9BA 2Y56A 3JAEA 5HEHA 3SIOA 2WN9A 4X5TA 4ILCA 3TLUA 4IREA 5LXBA 3TLSA 3UU3A 2BYNA 4LMKA 5BRXA 4ZZBA 4Z91A 4HFDA 2YOEA 4EZ1A 5BP0A 2Y7YA 4IL9A 2XNUA 2XQ5A 2XNVA 2YN6A 2WNCA 3WTMA 4AFHA 4ILAA 5J0ZA 2BR8A 2VL0A 3WIPA 4ZR6A 5HEJA 4UM3S 2PGZA 5HCJA 5L4EA 2PH9A 3EAMA 4DBMA 3JAFA 3SH1A 4FRRA 3UU4A 5LG3A 2WNLA 1UW6A 3RI5A 3UU6A 2XYSA 3PEOA 5IUXA 5AFHA 3U8KA 4ILBA 5AFKA 4D01A 5HEUA 2BG9E 4QH4A 2W8GA 2XQ9A 2X00D 4HFHA 4UY2A 4ZK4A 2BJ0A 2YMEA 3C79A 2WZYA 5HEGA 3RIAA 5AFMA 5J5GA 4TWDA 2XQ8A 3T4MA 2C9TA 3EI0A 4ZK1A 3IGQA 5JMEA 2XZ6A 4HQPA 4A97A 5BW2A 4HFEA 4NZBA 4QH1A 3U8NA 4UXUA 3UQ7A 3UU5A 5J5FA 2QC1B 5AFLA 4TNWA 4UM3A 5J5HA 3GUAA 3WTIA 4IL4A 4PIRA 4HFCA 2Y57A 2XQ3A 3WTNA 3JADA 5AINA 5AFNA 2XZ5A 3TLWA 3P50A 2Y54A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3UQ4 A;  4ZRU A;  4XHE A;  3TLV A;  3UU8 A;  2YKS A;  3WTO A;  2BR7 A;  3EHZ A;  5J5I A;  3U8M A;  1UV6 A;  2UZ6 A;  2ZJU A;  5AFM B;  2BYQ A;  4ALX A;  4NPP A;  3ZDG A;  2BG9 A;  3U8J A;  4XK9 A;  1UX2 A;  4TWF A;  3ZKR A;  3P4W A;  3WTK A;  5CFB A;  2BYR A;  2BYS A;  3LSV A;  3C84 A;  2W8F A;  5FJV A;  5HCM A;  3RHW A;  3WTH A;  4F8H A;  4HFI A;  5HEO A;  4UM1 A;  2XNT A;  2X00 A;  2ZJV A;  4AFT A;  3RQU A;  4ZJS A;  5KZU A;  2Y58 A;  4UM3 P;  3RIF A;  4QAA A;  4A98 A;  5SYO A;  3UUB A;  3SQ9 A;  2YMD A;  4QAB A;  2XQ4 A;  4TNV A;  5L4H A;  4BQT A;  5KE4 A;  4Z90 A;  4BFQ A;  5TVC A;  4LML A;  2XQ7 A;  4QAC A;  2BYP A;  5CO5 A;  3RQW A;  3WTL A;  4COF A;  4ZJT A;  2BG9 C;  4LMJ A;  4WV9 A;  2XQA A;  3ZDH A;  4B5D A;  4TWH A;  2BG9 B;  4AFG A;  5AFJ A;  3WTJ A;  5L47 A;  4ZZC A;  4QH5 A;  2XYT A;  2XQ6 A;  3PMZ A;  3TLT A;  4HFB A;  2WNJ A;  3SQ6 A;  3U8L A;  1I9B A;  2Y56 A;  3JAE A;  5HEH A;  3SIO A;  2WN9 A;  4X5T A;  4ILC A;  3TLU A;  4IRE A;  5LXB A;  3TLS A;  3UU3 A;  2BYN A;  4LMK A;  5BRX A;  4ZZB A;  4Z91 A;  4HFD A;  2YOE A;  4EZ1 A;  5BP0 A;  2Y7Y A;  4IL9 A;  2XNU A;  2XQ5 A;  2XNV A;  2YN6 A;  2WNC A;  3WTM A;  4AFH A;  4ILA A;  5J0Z A;  2BR8 A;  2VL0 A;  3WIP A;  4ZR6 A;  5HEJ A;  4UM3 S;  2PGZ A;  5HCJ A;  5L4E A;  2PH9 A;  3EAM A;  4DBM A;  3JAF A;  3SH1 A;  4FRR A;  3UU4 A;  5LG3 A;  2WNL A;  1UW6 A;  3RI5 A;  3UU6 A;  2XYS A;  3PEO A;  5IUX A;  5AFH A;  3U8K A;  4ILB A;  5AFK A;  4D01 A;  5HEU A;  2BG9 E;  4QH4 A;  2W8G A;  2XQ9 A;  2X00 D;  4HFH A;  4UY2 A;  4ZK4 A;  2BJ0 A;  2YME A;  3C79 A;  2WZY A;  5HEG A;  3RIA A;  5AFM A;  5J5G A;  4TWD A;  2XQ8 A;  3T4M A;  2C9T A;  3EI0 A;  4ZK1 A;  3IGQ A;  5JME A;  2XZ6 A;  4HQP A;  4A97 A;  5BW2 A;  4HFE A;  4NZB A;  4QH1 A;  3U8N A;  4UXU A;  3UQ7 A;  3UU5 A;  5J5F A;  2QC1 B;  5AFL A;  4TNW A;  4UM3 A;  5J5H A;  3GUA A;  3WTI A;  4IL4 A;  4PIR A;  4HFC A;  2Y57 A;  2XQ3 A;  3WTN A;  3JAD A;  5AIN A;  5AFN A;  2XZ5 A;  3TLW A;  3P50 A;  2Y54 A; 
#chains in the Genus database with same CATH topology
 3UQ4 A;  4ZRU A;  4XHE A;  3TLV A;  3UU8 A;  2YKS A;  3WTO A;  2BR7 A;  3EHZ A;  5J5I A;  3U8M A;  1UV6 A;  2UZ6 A;  2ZJU A;  5AFM B;  2BYQ A;  4ALX A;  4NPP A;  3ZDG A;  2BG9 A;  3U8J A;  4XK9 A;  1UX2 A;  4TWF A;  3ZKR A;  3P4W A;  3WTK A;  5CFB A;  2BYR A;  2BYS A;  3LSV A;  3C84 A;  2W8F A;  5FJV A;  5HCM A;  3RHW A;  3WTH A;  4F8H A;  4HFI A;  5HEO A;  4UM1 A;  2XNT A;  2X00 A;  2ZJV A;  4AFT A;  3RQU A;  4ZJS A;  5KZU A;  2Y58 A;  4UM3 P;  3RIF A;  4QAA A;  4A98 A;  5SYO A;  3UUB A;  3SQ9 A;  2YMD A;  4QAB A;  2XQ4 A;  4TNV A;  5L4H A;  4BQT A;  5KE4 A;  4Z90 A;  4BFQ A;  5TVC A;  4LML A;  2XQ7 A;  4QAC A;  2BYP A;  5CO5 A;  3RQW A;  3WTL A;  4COF A;  4ZJT A;  2BG9 C;  4LMJ A;  4WV9 A;  2XQA A;  3ZDH A;  4B5D A;  4TWH A;  2BG9 B;  4AFG A;  5AFJ A;  3WTJ A;  5L47 A;  4ZZC A;  4QH5 A;  2XYT A;  2XQ6 A;  3PMZ A;  3TLT A;  4HFB A;  2WNJ A;  3SQ6 A;  3U8L A;  1I9B A;  2Y56 A;  3JAE A;  5HEH A;  3SIO A;  2WN9 A;  4X5T A;  4ILC A;  3TLU A;  4IRE A;  5LXB A;  3TLS A;  3UU3 A;  2BYN A;  4LMK A;  5BRX A;  4ZZB A;  4Z91 A;  4HFD A;  2YOE A;  4EZ1 A;  5BP0 A;  2Y7Y A;  4IL9 A;  2XNU A;  2XQ5 A;  2XNV A;  2YN6 A;  2WNC A;  3WTM A;  4AFH A;  4ILA A;  5J0Z A;  2BR8 A;  2VL0 A;  3WIP A;  4ZR6 A;  5HEJ A;  4UM3 S;  2PGZ A;  5HCJ A;  5L4E A;  2PH9 A;  3EAM A;  4DBM A;  3JAF A;  3SH1 A;  4FRR A;  3UU4 A;  5LG3 A;  2WNL A;  1UW6 A;  3RI5 A;  3UU6 A;  2XYS A;  3PEO A;  5IUX A;  5AFH A;  3U8K A;  4ILB A;  5AFK A;  4D01 A;  5HEU A;  2BG9 E;  4QH4 A;  2W8G A;  2XQ9 A;  2X00 D;  4HFH A;  4UY2 A;  4ZK4 A;  2BJ0 A;  2YME A;  3C79 A;  2WZY A;  5HEG A;  3RIA A;  5AFM A;  5J5G A;  4TWD A;  2XQ8 A;  3T4M A;  2C9T A;  3EI0 A;  4ZK1 A;  3IGQ A;  5JME A;  2XZ6 A;  4HQP A;  4A97 A;  5BW2 A;  4HFE A;  4NZB A;  4QH1 A;  3U8N A;  4UXU A;  3UQ7 A;  3UU5 A;  5J5F A;  2QC1 B;  5AFL A;  4TNW A;  4UM3 A;  5J5H A;  3GUA A;  3WTI A;  4IL4 A;  4PIR A;  4HFC A;  2Y57 A;  2XQ3 A;  3WTN A;  3JAD A;  5AIN A;  5AFN A;  2XZ5 A;  3TLW A;  3P50 A;  2Y54 A; 
#chains in the Genus database with same CATH homology
 3UQ4 A;  4ZRU A;  4XHE A;  3TLV A;  3UU8 A;  2YKS A;  3WTO A;  2BR7 A;  3EHZ A;  5J5I A;  3U8M A;  1UV6 A;  2UZ6 A;  2ZJU A;  5AFM B;  2BYQ A;  4ALX A;  4NPP A;  3ZDG A;  2BG9 A;  3U8J A;  4XK9 A;  1UX2 A;  4TWF A;  3ZKR A;  3P4W A;  3WTK A;  5CFB A;  2BYR A;  2BYS A;  3LSV A;  3C84 A;  2W8F A;  5FJV A;  5HCM A;  3RHW A;  3WTH A;  4F8H A;  4HFI A;  5HEO A;  4UM1 A;  2XNT A;  2X00 A;  2ZJV A;  4AFT A;  3RQU A;  4ZJS A;  5KZU A;  2Y58 A;  4UM3 P;  3RIF A;  4QAA A;  4A98 A;  5SYO A;  3UUB A;  3SQ9 A;  2YMD A;  4QAB A;  2XQ4 A;  4TNV A;  5L4H A;  4BQT A;  5KE4 A;  4Z90 A;  4BFQ A;  5TVC A;  4LML A;  2XQ7 A;  4QAC A;  2BYP A;  5CO5 A;  3RQW A;  3WTL A;  4COF A;  4ZJT A;  2BG9 C;  4LMJ A;  4WV9 A;  2XQA A;  3ZDH A;  4B5D A;  4TWH A;  2BG9 B;  4AFG A;  5AFJ A;  3WTJ A;  5L47 A;  4ZZC A;  4QH5 A;  2XYT A;  2XQ6 A;  3PMZ A;  3TLT A;  4HFB A;  2WNJ A;  3SQ6 A;  3U8L A;  1I9B A;  2Y56 A;  3JAE A;  5HEH A;  3SIO A;  2WN9 A;  4X5T A;  4ILC A;  3TLU A;  4IRE A;  5LXB A;  3TLS A;  3UU3 A;  2BYN A;  4LMK A;  5BRX A;  4ZZB A;  4Z91 A;  4HFD A;  2YOE A;  4EZ1 A;  5BP0 A;  2Y7Y A;  4IL9 A;  2XNU A;  2XQ5 A;  2XNV A;  2YN6 A;  2WNC A;  3WTM A;  4AFH A;  4ILA A;  5J0Z A;  2BR8 A;  2VL0 A;  3WIP A;  4ZR6 A;  5HEJ A;  4UM3 S;  2PGZ A;  5HCJ A;  5L4E A;  2PH9 A;  3EAM A;  4DBM A;  3JAF A;  3SH1 A;  4FRR A;  3UU4 A;  5LG3 A;  2WNL A;  1UW6 A;  3RI5 A;  3UU6 A;  2XYS A;  3PEO A;  5IUX A;  5AFH A;  3U8K A;  4ILB A;  5AFK A;  4D01 A;  5HEU A;  2BG9 E;  4QH4 A;  2W8G A;  2XQ9 A;  2X00 D;  4HFH A;  4UY2 A;  4ZK4 A;  2BJ0 A;  2YME A;  3C79 A;  2WZY A;  5HEG A;  3RIA A;  5AFM A;  5J5G A;  4TWD A;  2XQ8 A;  3T4M A;  2C9T A;  3EI0 A;  4ZK1 A;  3IGQ A;  5JME A;  2XZ6 A;  4HQP A;  4A97 A;  5BW2 A;  4HFE A;  4NZB A;  4QH1 A;  3U8N A;  4UXU A;  3UQ7 A;  3UU5 A;  5J5F A;  2QC1 B;  5AFL A;  4TNW A;  4UM3 A;  5J5H A;  3GUA A;  3WTI A;  4IL4 A;  4PIR A;  4HFC A;  2Y57 A;  2XQ3 A;  3WTN A;  3JAD A;  5AIN A;  5AFN A;  2XZ5 A;  3TLW A;  3P50 A;  2Y54 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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