3WTIA

Crystal structure of lymnaea stagnalis acetylcholine-binding protein q55r mutant complexed with clothianidin
Total Genus 46
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
46
sequence length
207
structure length
207
Chain Sequence
ADRADILYNIRQTSRPDVIPTQRDRPVAVSVSLKFINILEVNEITNEVDVVFWQRTTWSDRTLAWDSSHSPDQVSVPISSLWVPDLAAYNAISKPEVLTPQLARVVSDGEVLYMPSIRQRFSCDVSGVDTESGATCRIKIGSWTHHSREISVDPTTENSDDSEYFSQYSRFEILDVTQKKNSVTYSCCPEAYEDVEVSLNFRKKGRS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Signaling protein
source organism Lymnaea stagnalis
publication title Studies on an acetylcholine binding protein identify a basic residue in loop G on the beta 1 strand as a new structural determinant of neonicotinoid actions
pubmed doi rcsb
molecule keywords Acetylcholine-binding protein
total genus 46
structure length 207
sequence length 207
chains with identical sequence B, C, D, E
ec nomenclature
pdb deposition date 2014-04-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02931 Neur_chan_LBD Neurotransmitter-gated ion-channel ligand binding domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.70.170.10 Mainly Beta Distorted Sandwich Acetylcholine Binding Protein; Chain: A, Neurotransmitter-gated ion-channel ligand-binding domain 3wtiA00
2BG9B 2YOEA 3U8JA 3WTJA 5LXBA 2XNUA 2XZ5A 3RHWA 3JAFA 4F8HA 2W8FA 4Z91A 2XZ6A 3EI0A 3P50A 4QAAA 2ZJVA 3UQ4A 2VL0A 4ZZBA 5KZUA 4D01A 5J5FA 3T4MA 4HFIA 3ZKRA 3WTNA 2UZ6A 2Y56A 1I9BA 3TLUA 4HFHA 2XNTA 4EZ1A 4QACA 2BG9C 4LMJA 3U8LA 4LMKA 3PMZA 2WNLA 5HEGA 3SQ6A 2BYRA 2BYSA 3JAEA 4TWDA 3TLTA 2BR7A 2Y57A 2YMDA 2PGZA 4AFGA 4HFBA 5CFBA 4TWHA 3UUBA 3SH1A 4BQTA 3U8MA 3UU3A 2BJ0A 2QC1B 2Y7YA 2XYTA 3RQWA 4BFQA 4UM3S 5KE4A 5HEUA 3PEOA 4NPPA 4UY2A 5AFNA 4ZK1A 4NZBA 2W8GA 3UQ7A 4ZZCA 3U8NA 2Y58A 5CO5A 2WZYA 4B5DA 3SIOA 2Y54A 2WN9A 4TNWA 5TVCA 5SYOA 2XYSA 5FJVA 2XQ5A 2ZJUA 4QABA 3SQ9A 4X5TA 4AFTA 4HFDA 4AFHA 4WV9A 3RI5A 1UW6A 2BG9A 3C79A 5HEJA 5BW2A 5J5HA 2XQAA 3RIFA 5AINA 4QH4A 4HQPA 3WTOA 3WTHA 4UM3P 3WTKA 3JADA 3WIPA 5AFLA 4QH1A 4PIRA 5LG3A 2XQ7A 4TNVA 4ZR6A 4ILCA 4ALXA 1UX2A 2WNCA 4XK9A 5BRXA 3UU8A 2PH9A 3UU6A 5L47A 5AFKA 2XNVA 4Z90A 4TWFA 5BP0A 4QH5A 2BG9E 2BYNA 3WTLA 2YN6A 3EHZA 4HFCA 4ILAA 3TLSA 4DBMA 4ILBA 4COFA 3GUAA 2XQ6A 3UU5A 5AFMA 3TLVA 3WTMA 3P4WA 4ZK4A 5HCMA 2YMEA 4ZJSA 4IL4A 4UM1A 3RIAA 5AFJA 5L4EA 2C9TA 5JMEA 3EAMA 5AFHA 2BYPA 4ZJTA 3C84A 3IGQA 2BR8A 2XQ3A 5HCJA 4IL9A 5L4HA 2YKSA 4ZRUA 2WNJA 4FRRA 2X00D 4HFEA 3U8KA 2BYQA 2X00A 5J0ZA 2XQ8A 5HEHA 5IUXA 4IREA 3ZDGA 3TLWA 5J5IA 1UV6A 4XHEA 4LMLA 2XQ4A 4UM3A 5J5GA 3RQUA 3UU4A 5HEOA 3ZDHA 5AFMB 3LSVA 3WTIA 2XQ9A 4UXUA 4A98A 4A97A
chains in the Genus database with same CATH superfamily
2BG9B 2YOEA 3U8JA 3WTJA 5LXBA 2XNUA 2XZ5A 3RHWA 3JAFA 4F8HA 2W8FA 4Z91A 2XZ6A 3EI0A 3P50A 4QAAA 2ZJVA 3UQ4A 2VL0A 4ZZBA 5KZUA 4D01A 5J5FA 3T4MA 4HFIA 3ZKRA 3WTNA 2UZ6A 2Y56A 1I9BA 3TLUA 4HFHA 2XNTA 4EZ1A 4QACA 2BG9C 4LMJA 3U8LA 4LMKA 3PMZA 2WNLA 5HEGA 3SQ6A 2BYRA 2BYSA 3JAEA 4TWDA 3TLTA 2BR7A 2Y57A 2YMDA 2PGZA 4AFGA 4HFBA 5CFBA 4TWHA 3UUBA 3SH1A 4BQTA 3U8MA 3UU3A 2BJ0A 2QC1B 2Y7YA 2XYTA 3RQWA 4BFQA 4UM3S 5KE4A 5HEUA 3PEOA 4NPPA 4UY2A 5AFNA 4ZK1A 4NZBA 2W8GA 3UQ7A 4ZZCA 3U8NA 2Y58A 5CO5A 2WZYA 4B5DA 3SIOA 2Y54A 2WN9A 4TNWA 5TVCA 5SYOA 2XYSA 5FJVA 2XQ5A 2ZJUA 4QABA 3SQ9A 4X5TA 4AFTA 4HFDA 4AFHA 4WV9A 3RI5A 1UW6A 2BG9A 3C79A 5HEJA 5BW2A 5J5HA 2XQAA 3RIFA 5AINA 4QH4A 4HQPA 3WTOA 3WTHA 4UM3P 3WTKA 3JADA 3WIPA 5AFLA 4QH1A 4PIRA 5LG3A 2XQ7A 4TNVA 4ZR6A 4ILCA 4ALXA 1UX2A 2WNCA 4XK9A 5BRXA 3UU8A 2PH9A 3UU6A 5L47A 5AFKA 2XNVA 4Z90A 4TWFA 5BP0A 4QH5A 2BG9E 2BYNA 3WTLA 2YN6A 3EHZA 4HFCA 4ILAA 3TLSA 4DBMA 4ILBA 4COFA 3GUAA 2XQ6A 3UU5A 5AFMA 3TLVA 3WTMA 3P4WA 4ZK4A 5HCMA 2YMEA 4ZJSA 4IL4A 4UM1A 3RIAA 5AFJA 5L4EA 2C9TA 5JMEA 3EAMA 5AFHA 2BYPA 4ZJTA 3C84A 3IGQA 2BR8A 2XQ3A 5HCJA 4IL9A 5L4HA 2YKSA 4ZRUA 2WNJA 4FRRA 2X00D 4HFEA 3U8KA 2BYQA 2X00A 5J0ZA 2XQ8A 5HEHA 5IUXA 4IREA 3ZDGA 3TLWA 5J5IA 1UV6A 4XHEA 4LMLA 2XQ4A 4UM3A 5J5GA 3RQUA 3UU4A 5HEOA 3ZDHA 5AFMB 3LSVA 3WTIA 2XQ9A 4UXUA 4A98A 4A97A
chains in the Genus database with same CATH topology
2BG9B 2YOEA 3U8JA 3WTJA 5LXBA 2XNUA 2XZ5A 3RHWA 3JAFA 4F8HA 2W8FA 4Z91A 2XZ6A 3EI0A 3P50A 4QAAA 2ZJVA 3UQ4A 2VL0A 4ZZBA 5KZUA 4D01A 5J5FA 3T4MA 4HFIA 3ZKRA 3WTNA 2UZ6A 2Y56A 1I9BA 3TLUA 4HFHA 2XNTA 4EZ1A 4QACA 2BG9C 4LMJA 3U8LA 4LMKA 3PMZA 2WNLA 5HEGA 3SQ6A 2BYRA 2BYSA 3JAEA 4TWDA 3TLTA 2BR7A 2Y57A 2YMDA 2PGZA 4AFGA 4HFBA 5CFBA 4TWHA 3UUBA 3SH1A 4BQTA 3U8MA 3UU3A 2BJ0A 2QC1B 2Y7YA 2XYTA 3RQWA 4BFQA 4UM3S 5KE4A 5HEUA 3PEOA 4NPPA 4UY2A 5AFNA 4ZK1A 4NZBA 2W8GA 3UQ7A 4ZZCA 3U8NA 2Y58A 5CO5A 2WZYA 4B5DA 3SIOA 2Y54A 2WN9A 4TNWA 5TVCA 5SYOA 2XYSA 5FJVA 2XQ5A 2ZJUA 4QABA 3SQ9A 4X5TA 4AFTA 4HFDA 4AFHA 4WV9A 3RI5A 1UW6A 2BG9A 3C79A 5HEJA 5BW2A 5J5HA 2XQAA 3RIFA 5AINA 4QH4A 4HQPA 3WTOA 3WTHA 4UM3P 3WTKA 3JADA 3WIPA 5AFLA 4QH1A 4PIRA 5LG3A 2XQ7A 4TNVA 4ZR6A 4ILCA 4ALXA 1UX2A 2WNCA 4XK9A 5BRXA 3UU8A 2PH9A 3UU6A 5L47A 5AFKA 2XNVA 4Z90A 4TWFA 5BP0A 4QH5A 2BG9E 2BYNA 3WTLA 2YN6A 3EHZA 4HFCA 4ILAA 3TLSA 4DBMA 4ILBA 4COFA 3GUAA 2XQ6A 3UU5A 5AFMA 3TLVA 3WTMA 3P4WA 4ZK4A 5HCMA 2YMEA 4ZJSA 4IL4A 4UM1A 3RIAA 5AFJA 5L4EA 2C9TA 5JMEA 3EAMA 5AFHA 2BYPA 4ZJTA 3C84A 3IGQA 2BR8A 2XQ3A 5HCJA 4IL9A 5L4HA 2YKSA 4ZRUA 2WNJA 4FRRA 2X00D 4HFEA 3U8KA 2BYQA 2X00A 5J0ZA 2XQ8A 5HEHA 5IUXA 4IREA 3ZDGA 3TLWA 5J5IA 1UV6A 4XHEA 4LMLA 2XQ4A 4UM3A 5J5GA 3RQUA 3UU4A 5HEOA 3ZDHA 5AFMB 3LSVA 3WTIA 2XQ9A 4UXUA 4A98A 4A97A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2BG9 B;  2YOE A;  3U8J A;  3WTJ A;  5LXB A;  2XNU A;  2XZ5 A;  3RHW A;  3JAF A;  4F8H A;  2W8F A;  4Z91 A;  2XZ6 A;  3EI0 A;  3P50 A;  4QAA A;  2ZJV A;  3UQ4 A;  2VL0 A;  4ZZB A;  5KZU A;  4D01 A;  5J5F A;  3T4M A;  4HFI A;  3ZKR A;  3WTN A;  2UZ6 A;  2Y56 A;  1I9B A;  3TLU A;  4HFH A;  2XNT A;  4EZ1 A;  4QAC A;  2BG9 C;  4LMJ A;  3U8L A;  4LMK A;  3PMZ A;  2WNL A;  5HEG A;  3SQ6 A;  2BYR A;  2BYS A;  3JAE A;  4TWD A;  3TLT A;  2BR7 A;  2Y57 A;  2YMD A;  2PGZ A;  4AFG A;  4HFB A;  5CFB A;  4TWH A;  3UUB A;  3SH1 A;  4BQT A;  3U8M A;  3UU3 A;  2BJ0 A;  2QC1 B;  2Y7Y A;  2XYT A;  3RQW A;  4BFQ A;  4UM3 S;  5KE4 A;  5HEU A;  3PEO A;  4NPP A;  4UY2 A;  5AFN A;  4ZK1 A;  4NZB A;  2W8G A;  3UQ7 A;  4ZZC A;  3U8N A;  2Y58 A;  5CO5 A;  2WZY A;  4B5D A;  3SIO A;  2Y54 A;  2WN9 A;  4TNW A;  5TVC A;  5SYO A;  2XYS A;  5FJV A;  2XQ5 A;  2ZJU A;  4QAB A;  3SQ9 A;  4X5T A;  4AFT A;  4HFD A;  4AFH A;  4WV9 A;  3RI5 A;  1UW6 A;  2BG9 A;  3C79 A;  5HEJ A;  5BW2 A;  5J5H A;  2XQA A;  3RIF A;  5AIN A;  4QH4 A;  4HQP A;  3WTO A;  3WTH A;  4UM3 P;  3WTK A;  3JAD A;  3WIP A;  5AFL A;  4QH1 A;  4PIR A;  5LG3 A;  2XQ7 A;  4TNV A;  4ZR6 A;  4ILC A;  4ALX A;  1UX2 A;  2WNC A;  4XK9 A;  5BRX A;  3UU8 A;  2PH9 A;  3UU6 A;  5L47 A;  5AFK A;  2XNV A;  4Z90 A;  4TWF A;  5BP0 A;  4QH5 A;  2BG9 E;  2BYN A;  3WTL A;  2YN6 A;  3EHZ A;  4HFC A;  4ILA A;  3TLS A;  4DBM A;  4ILB A;  4COF A;  3GUA A;  2XQ6 A;  3UU5 A;  5AFM A;  3TLV A;  3WTM A;  3P4W A;  4ZK4 A;  5HCM A;  2YME A;  4ZJS A;  4IL4 A;  4UM1 A;  3RIA A;  5AFJ A;  5L4E A;  2C9T A;  5JME A;  3EAM A;  5AFH A;  2BYP A;  4ZJT A;  3C84 A;  3IGQ A;  2BR8 A;  2XQ3 A;  5HCJ A;  4IL9 A;  5L4H A;  2YKS A;  4ZRU A;  2WNJ A;  4FRR A;  2X00 D;  4HFE A;  3U8K A;  2BYQ A;  2X00 A;  5J0Z A;  2XQ8 A;  5HEH A;  5IUX A;  4IRE A;  3ZDG A;  3TLW A;  5J5I A;  1UV6 A;  4XHE A;  4LML A;  2XQ4 A;  4UM3 A;  5J5G A;  3RQU A;  3UU4 A;  5HEO A;  3ZDH A;  5AFM B;  3LSV A;  3WTI A;  2XQ9 A;  4UXU A;  4A98 A;  4A97 A; 
#chains in the Genus database with same CATH topology
 2BG9 B;  2YOE A;  3U8J A;  3WTJ A;  5LXB A;  2XNU A;  2XZ5 A;  3RHW A;  3JAF A;  4F8H A;  2W8F A;  4Z91 A;  2XZ6 A;  3EI0 A;  3P50 A;  4QAA A;  2ZJV A;  3UQ4 A;  2VL0 A;  4ZZB A;  5KZU A;  4D01 A;  5J5F A;  3T4M A;  4HFI A;  3ZKR A;  3WTN A;  2UZ6 A;  2Y56 A;  1I9B A;  3TLU A;  4HFH A;  2XNT A;  4EZ1 A;  4QAC A;  2BG9 C;  4LMJ A;  3U8L A;  4LMK A;  3PMZ A;  2WNL A;  5HEG A;  3SQ6 A;  2BYR A;  2BYS A;  3JAE A;  4TWD A;  3TLT A;  2BR7 A;  2Y57 A;  2YMD A;  2PGZ A;  4AFG A;  4HFB A;  5CFB A;  4TWH A;  3UUB A;  3SH1 A;  4BQT A;  3U8M A;  3UU3 A;  2BJ0 A;  2QC1 B;  2Y7Y A;  2XYT A;  3RQW A;  4BFQ A;  4UM3 S;  5KE4 A;  5HEU A;  3PEO A;  4NPP A;  4UY2 A;  5AFN A;  4ZK1 A;  4NZB A;  2W8G A;  3UQ7 A;  4ZZC A;  3U8N A;  2Y58 A;  5CO5 A;  2WZY A;  4B5D A;  3SIO A;  2Y54 A;  2WN9 A;  4TNW A;  5TVC A;  5SYO A;  2XYS A;  5FJV A;  2XQ5 A;  2ZJU A;  4QAB A;  3SQ9 A;  4X5T A;  4AFT A;  4HFD A;  4AFH A;  4WV9 A;  3RI5 A;  1UW6 A;  2BG9 A;  3C79 A;  5HEJ A;  5BW2 A;  5J5H A;  2XQA A;  3RIF A;  5AIN A;  4QH4 A;  4HQP A;  3WTO A;  3WTH A;  4UM3 P;  3WTK A;  3JAD A;  3WIP A;  5AFL A;  4QH1 A;  4PIR A;  5LG3 A;  2XQ7 A;  4TNV A;  4ZR6 A;  4ILC A;  4ALX A;  1UX2 A;  2WNC A;  4XK9 A;  5BRX A;  3UU8 A;  2PH9 A;  3UU6 A;  5L47 A;  5AFK A;  2XNV A;  4Z90 A;  4TWF A;  5BP0 A;  4QH5 A;  2BG9 E;  2BYN A;  3WTL A;  2YN6 A;  3EHZ A;  4HFC A;  4ILA A;  3TLS A;  4DBM A;  4ILB A;  4COF A;  3GUA A;  2XQ6 A;  3UU5 A;  5AFM A;  3TLV A;  3WTM A;  3P4W A;  4ZK4 A;  5HCM A;  2YME A;  4ZJS A;  4IL4 A;  4UM1 A;  3RIA A;  5AFJ A;  5L4E A;  2C9T A;  5JME A;  3EAM A;  5AFH A;  2BYP A;  4ZJT A;  3C84 A;  3IGQ A;  2BR8 A;  2XQ3 A;  5HCJ A;  4IL9 A;  5L4H A;  2YKS A;  4ZRU A;  2WNJ A;  4FRR A;  2X00 D;  4HFE A;  3U8K A;  2BYQ A;  2X00 A;  5J0Z A;  2XQ8 A;  5HEH A;  5IUX A;  4IRE A;  3ZDG A;  3TLW A;  5J5I A;  1UV6 A;  4XHE A;  4LML A;  2XQ4 A;  4UM3 A;  5J5G A;  3RQU A;  3UU4 A;  5HEO A;  3ZDH A;  5AFM B;  3LSV A;  3WTI A;  2XQ9 A;  4UXU A;  4A98 A;  4A97 A; 
#chains in the Genus database with same CATH homology
 2BG9 B;  2YOE A;  3U8J A;  3WTJ A;  5LXB A;  2XNU A;  2XZ5 A;  3RHW A;  3JAF A;  4F8H A;  2W8F A;  4Z91 A;  2XZ6 A;  3EI0 A;  3P50 A;  4QAA A;  2ZJV A;  3UQ4 A;  2VL0 A;  4ZZB A;  5KZU A;  4D01 A;  5J5F A;  3T4M A;  4HFI A;  3ZKR A;  3WTN A;  2UZ6 A;  2Y56 A;  1I9B A;  3TLU A;  4HFH A;  2XNT A;  4EZ1 A;  4QAC A;  2BG9 C;  4LMJ A;  3U8L A;  4LMK A;  3PMZ A;  2WNL A;  5HEG A;  3SQ6 A;  2BYR A;  2BYS A;  3JAE A;  4TWD A;  3TLT A;  2BR7 A;  2Y57 A;  2YMD A;  2PGZ A;  4AFG A;  4HFB A;  5CFB A;  4TWH A;  3UUB A;  3SH1 A;  4BQT A;  3U8M A;  3UU3 A;  2BJ0 A;  2QC1 B;  2Y7Y A;  2XYT A;  3RQW A;  4BFQ A;  4UM3 S;  5KE4 A;  5HEU A;  3PEO A;  4NPP A;  4UY2 A;  5AFN A;  4ZK1 A;  4NZB A;  2W8G A;  3UQ7 A;  4ZZC A;  3U8N A;  2Y58 A;  5CO5 A;  2WZY A;  4B5D A;  3SIO A;  2Y54 A;  2WN9 A;  4TNW A;  5TVC A;  5SYO A;  2XYS A;  5FJV A;  2XQ5 A;  2ZJU A;  4QAB A;  3SQ9 A;  4X5T A;  4AFT A;  4HFD A;  4AFH A;  4WV9 A;  3RI5 A;  1UW6 A;  2BG9 A;  3C79 A;  5HEJ A;  5BW2 A;  5J5H A;  2XQA A;  3RIF A;  5AIN A;  4QH4 A;  4HQP A;  3WTO A;  3WTH A;  4UM3 P;  3WTK A;  3JAD A;  3WIP A;  5AFL A;  4QH1 A;  4PIR A;  5LG3 A;  2XQ7 A;  4TNV A;  4ZR6 A;  4ILC A;  4ALX A;  1UX2 A;  2WNC A;  4XK9 A;  5BRX A;  3UU8 A;  2PH9 A;  3UU6 A;  5L47 A;  5AFK A;  2XNV A;  4Z90 A;  4TWF A;  5BP0 A;  4QH5 A;  2BG9 E;  2BYN A;  3WTL A;  2YN6 A;  3EHZ A;  4HFC A;  4ILA A;  3TLS A;  4DBM A;  4ILB A;  4COF A;  3GUA A;  2XQ6 A;  3UU5 A;  5AFM A;  3TLV A;  3WTM A;  3P4W A;  4ZK4 A;  5HCM A;  2YME A;  4ZJS A;  4IL4 A;  4UM1 A;  3RIA A;  5AFJ A;  5L4E A;  2C9T A;  5JME A;  3EAM A;  5AFH A;  2BYP A;  4ZJT A;  3C84 A;  3IGQ A;  2BR8 A;  2XQ3 A;  5HCJ A;  4IL9 A;  5L4H A;  2YKS A;  4ZRU A;  2WNJ A;  4FRR A;  2X00 D;  4HFE A;  3U8K A;  2BYQ A;  2X00 A;  5J0Z A;  2XQ8 A;  5HEH A;  5IUX A;  4IRE A;  3ZDG A;  3TLW A;  5J5I A;  1UV6 A;  4XHE A;  4LML A;  2XQ4 A;  4UM3 A;  5J5G A;  3RQU A;  3UU4 A;  5HEO A;  3ZDH A;  5AFM B;  3LSV A;  3WTI A;  2XQ9 A;  4UXU A;  4A98 A;  4A97 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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