3WTIA

Crystal structure of lymnaea stagnalis acetylcholine-binding protein q55r mutant complexed with clothianidin
Total Genus 46
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
46
sequence length
207
structure length
207
Chain Sequence
b'ADRADILYNIRQTSRPDVIPTQRDRPVAVSVSLKFINILEVNEITNEVDVVFWQRTTWSDRTLAWDSSHSPDQVSVPISSLWVPDLAAYNAISKPEVLTPQLARVVSDGEVLYMPSIRQRFSCDVSGVDTESGATCRIKIGSWTHHSREISVDPTTENSDDSEYFSQYSRFEILDVTQKKNSVTYSCCPEAYEDVEVSLNFRKKGRS'
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Studies on an acetylcholine binding protein identify a basic residue in loop G on the beta 1 strand as a new structural determinant of neonicotinoid actions
pubmed doi rcsb
molecule keywords Acetylcholine-binding protein
source organism Lymnaea stagnalis
molecule tags Signaling protein
total genus 46
structure length 207
sequence length 207
chains with identical sequence B, C, D, E
ec nomenclature
pdb deposition date 2014-04-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02931 Neur_chan_LBD Neurotransmitter-gated ion-channel ligand binding domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.70.170.10 Mainly Beta Distorted Sandwich Acetylcholine Binding Protein; Chain: A, Neurotransmitter-gated ion-channel ligand-binding domain 3wtiA00
4QH4A 2BYRA 3GUAA 4XK9A 3JAFA 2BG9A 3RQWA 4ZJSA 3SIOA 3IGQA 4PIRA 2WNJA 2XQ9A 4ZZCA 3TLUA 4HFCA 1UW6A 5KZUA 5L47A 2BYNA 2YMDA 4TWHA 2PGZA 3U8NA 2BG9C 2BYPA 4FRRA 3U8LA 3UU3A 2XQ4A 3UU6A 4QH1A 2YN6A 4QABA 3P4WA 4IREA 2W8GA 3WTNA 4UM3S 4Z90A 2VL0A 3RIAA 3WTIA 4ZK1A 5LG3A 4TWFA 4ZK4A 4QAAA 2YMEA 2BJ0A 2XQ6A 3WTHA 3WTLA 5AFLA 5L4EA 4X5TA 4IL4A 3RIFA 3WTMA 3T4MA 4HFDA 3PEOA 3TLSA 2X00A 3TLVA 4F8HA 3TLTA 3UU8A 2XQ7A 5HEUA 5AFHA 2Y54A 4Z91A 5TVCA 3C84A 3ZDHA 5CO5A 2XQ5A 5AFMB 2WNLA 4TNWA 4UM3A 4EZ1A 3WTOA 4BFQA 5HEHA 2XQ3A 3JADA 5FJVA 5J0ZA 3ZKRA 3RI5A 4UM1A 2BG9B 4ILBA 2W8FA 4UXUA 5IUXA 2UZ6A 5J5HA 3WIPA 4TNVA 2XNUA 4AFGA 4ILCA 3RHWA 2BG9E 2X00D 3U8JA 3WTJA 2XZ6A 4LMJA 4UM3P 3EHZA 2Y7YA 4WV9A 4DBMA 4HQPA 4HFBA 4NPPA 2ZJVA 5AFKA 5LXBA 2BR7A 4LMLA 5KE4A 2WZYA 4NZBA 1UV6A 2WN9A 5J5GA 5SYOA 5JMEA 2Y57A 3RQUA 2Y56A 3EI0A 2PH9A 3UU4A 4COFA 4UY2A 5BRXA 4ILAA 2Y58A 5L4HA 3C79A 2XYSA 4A98A 4ZR6A 5AINA 4QACA 4XHEA 4HFHA 3P50A 2ZJUA 4HFIA 4D01A 3UQ7A 3TLWA 4A97A 5HEOA 5CFBA 5J5IA 2WNCA 1UX2A 2XYTA 2XQAA 5HCMA 3JAEA 4ALXA 1I9BA 4TWDA 5BW2A 2XNTA 2XZ5A 5HEJA 2C9TA 4AFHA 2BYQA 3WTKA 2XQ8A 4AFTA 4LMKA 4BQTA 3U8KA 4ZJTA 2BYSA 3SQ9A 2YKSA 3LSVA 3UU5A 4B5DA 4HFEA 5HCJA 3ZDGA 5HEGA 4ZRUA 2YOEA 3UUBA 3SH1A 3SQ6A 2BR8A 5J5FA 3U8MA 5AFJA 2QC1B 3UQ4A 5BP0A 4IL9A 5AFMA 4QH5A 2XNVA 4ZZBA 3PMZA 3EAMA 5AFNA
chains in the Genus database with same CATH superfamily
4QH4A 2BYRA 3GUAA 4XK9A 3JAFA 2BG9A 3RQWA 4ZJSA 3SIOA 3IGQA 4PIRA 2WNJA 2XQ9A 4ZZCA 3TLUA 4HFCA 1UW6A 5KZUA 5L47A 2BYNA 2YMDA 4TWHA 2PGZA 3U8NA 2BG9C 2BYPA 4FRRA 3U8LA 3UU3A 2XQ4A 3UU6A 4QH1A 2YN6A 4QABA 3P4WA 4IREA 2W8GA 3WTNA 4UM3S 4Z90A 2VL0A 3RIAA 3WTIA 4ZK1A 5LG3A 4TWFA 4ZK4A 4QAAA 2YMEA 2BJ0A 2XQ6A 3WTHA 3WTLA 5AFLA 5L4EA 4X5TA 4IL4A 3RIFA 3WTMA 3T4MA 4HFDA 3PEOA 3TLSA 2X00A 3TLVA 4F8HA 3TLTA 3UU8A 2XQ7A 5HEUA 5AFHA 2Y54A 4Z91A 5TVCA 3C84A 3ZDHA 5CO5A 2XQ5A 5AFMB 2WNLA 4TNWA 4UM3A 4EZ1A 3WTOA 4BFQA 5HEHA 2XQ3A 3JADA 5FJVA 5J0ZA 3ZKRA 3RI5A 4UM1A 2BG9B 4ILBA 2W8FA 4UXUA 5IUXA 2UZ6A 5J5HA 3WIPA 4TNVA 2XNUA 4AFGA 4ILCA 3RHWA 2BG9E 2X00D 3U8JA 3WTJA 2XZ6A 4LMJA 4UM3P 3EHZA 2Y7YA 4WV9A 4DBMA 4HQPA 4HFBA 4NPPA 2ZJVA 5AFKA 5LXBA 2BR7A 4LMLA 5KE4A 2WZYA 4NZBA 1UV6A 2WN9A 5J5GA 5SYOA 5JMEA 2Y57A 3RQUA 2Y56A 3EI0A 2PH9A 3UU4A 4COFA 4UY2A 5BRXA 4ILAA 2Y58A 5L4HA 3C79A 2XYSA 4A98A 4ZR6A 5AINA 4QACA 4XHEA 4HFHA 3P50A 2ZJUA 4HFIA 4D01A 3UQ7A 3TLWA 4A97A 5HEOA 5CFBA 5J5IA 2WNCA 1UX2A 2XYTA 2XQAA 5HCMA 3JAEA 4ALXA 1I9BA 4TWDA 5BW2A 2XNTA 2XZ5A 5HEJA 2C9TA 4AFHA 2BYQA 3WTKA 2XQ8A 4AFTA 4LMKA 4BQTA 3U8KA 4ZJTA 2BYSA 3SQ9A 2YKSA 3LSVA 3UU5A 4B5DA 4HFEA 5HCJA 3ZDGA 5HEGA 4ZRUA 2YOEA 3UUBA 3SH1A 3SQ6A 2BR8A 5J5FA 3U8MA 5AFJA 2QC1B 3UQ4A 5BP0A 4IL9A 5AFMA 4QH5A 2XNVA 4ZZBA 3PMZA 3EAMA 5AFNA
chains in the Genus database with same CATH topology
4QH4A 2BYRA 3GUAA 4XK9A 3JAFA 2BG9A 3RQWA 4ZJSA 3SIOA 3IGQA 4PIRA 2WNJA 2XQ9A 4ZZCA 3TLUA 4HFCA 1UW6A 5KZUA 5L47A 2BYNA 2YMDA 4TWHA 2PGZA 3U8NA 2BG9C 2BYPA 4FRRA 3U8LA 3UU3A 2XQ4A 3UU6A 4QH1A 2YN6A 4QABA 3P4WA 4IREA 2W8GA 3WTNA 4UM3S 4Z90A 2VL0A 3RIAA 3WTIA 4ZK1A 5LG3A 4TWFA 4ZK4A 4QAAA 2YMEA 2BJ0A 2XQ6A 3WTHA 3WTLA 5AFLA 5L4EA 4X5TA 4IL4A 3RIFA 3WTMA 3T4MA 4HFDA 3PEOA 3TLSA 2X00A 3TLVA 4F8HA 3TLTA 3UU8A 2XQ7A 5HEUA 5AFHA 2Y54A 4Z91A 5TVCA 3C84A 3ZDHA 5CO5A 2XQ5A 5AFMB 2WNLA 4TNWA 4UM3A 4EZ1A 3WTOA 4BFQA 5HEHA 2XQ3A 3JADA 5FJVA 5J0ZA 3ZKRA 3RI5A 4UM1A 2BG9B 4ILBA 2W8FA 4UXUA 5IUXA 2UZ6A 5J5HA 3WIPA 4TNVA 2XNUA 4AFGA 4ILCA 3RHWA 2BG9E 2X00D 3U8JA 3WTJA 2XZ6A 4LMJA 4UM3P 3EHZA 2Y7YA 4WV9A 4DBMA 4HQPA 4HFBA 4NPPA 2ZJVA 5AFKA 5LXBA 2BR7A 4LMLA 5KE4A 2WZYA 4NZBA 1UV6A 2WN9A 5J5GA 5SYOA 5JMEA 2Y57A 3RQUA 2Y56A 3EI0A 2PH9A 3UU4A 4COFA 4UY2A 5BRXA 4ILAA 2Y58A 5L4HA 3C79A 2XYSA 4A98A 4ZR6A 5AINA 4QACA 4XHEA 4HFHA 3P50A 2ZJUA 4HFIA 4D01A 3UQ7A 3TLWA 4A97A 5HEOA 5CFBA 5J5IA 2WNCA 1UX2A 2XYTA 2XQAA 5HCMA 3JAEA 4ALXA 1I9BA 4TWDA 5BW2A 2XNTA 2XZ5A 5HEJA 2C9TA 4AFHA 2BYQA 3WTKA 2XQ8A 4AFTA 4LMKA 4BQTA 3U8KA 4ZJTA 2BYSA 3SQ9A 2YKSA 3LSVA 3UU5A 4B5DA 4HFEA 5HCJA 3ZDGA 5HEGA 4ZRUA 2YOEA 3UUBA 3SH1A 3SQ6A 2BR8A 5J5FA 3U8MA 5AFJA 2QC1B 3UQ4A 5BP0A 4IL9A 5AFMA 4QH5A 2XNVA 4ZZBA 3PMZA 3EAMA 5AFNA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4QH4 A;  2BYR A;  3GUA A;  4XK9 A;  3JAF A;  2BG9 A;  3RQW A;  4ZJS A;  3SIO A;  3IGQ A;  4PIR A;  2WNJ A;  2XQ9 A;  4ZZC A;  3TLU A;  4HFC A;  1UW6 A;  5KZU A;  5L47 A;  2BYN A;  2YMD A;  4TWH A;  2PGZ A;  3U8N A;  2BG9 C;  2BYP A;  4FRR A;  3U8L A;  3UU3 A;  2XQ4 A;  3UU6 A;  4QH1 A;  2YN6 A;  4QAB A;  3P4W A;  4IRE A;  2W8G A;  3WTN A;  4UM3 S;  4Z90 A;  2VL0 A;  3RIA A;  3WTI A;  4ZK1 A;  5LG3 A;  4TWF A;  4ZK4 A;  4QAA A;  2YME A;  2BJ0 A;  2XQ6 A;  3WTH A;  3WTL A;  5AFL A;  5L4E A;  4X5T A;  4IL4 A;  3RIF A;  3WTM A;  3T4M A;  4HFD A;  3PEO A;  3TLS A;  2X00 A;  3TLV A;  4F8H A;  3TLT A;  3UU8 A;  2XQ7 A;  5HEU A;  5AFH A;  2Y54 A;  4Z91 A;  5TVC A;  3C84 A;  3ZDH A;  5CO5 A;  2XQ5 A;  5AFM B;  2WNL A;  4TNW A;  4UM3 A;  4EZ1 A;  3WTO A;  4BFQ A;  5HEH A;  2XQ3 A;  3JAD A;  5FJV A;  5J0Z A;  3ZKR A;  3RI5 A;  4UM1 A;  2BG9 B;  4ILB A;  2W8F A;  4UXU A;  5IUX A;  2UZ6 A;  5J5H A;  3WIP A;  4TNV A;  2XNU A;  4AFG A;  4ILC A;  3RHW A;  2BG9 E;  2X00 D;  3U8J A;  3WTJ A;  2XZ6 A;  4LMJ A;  4UM3 P;  3EHZ A;  2Y7Y A;  4WV9 A;  4DBM A;  4HQP A;  4HFB A;  4NPP A;  2ZJV A;  5AFK A;  5LXB A;  2BR7 A;  4LML A;  5KE4 A;  2WZY A;  4NZB A;  1UV6 A;  2WN9 A;  5J5G A;  5SYO A;  5JME A;  2Y57 A;  3RQU A;  2Y56 A;  3EI0 A;  2PH9 A;  3UU4 A;  4COF A;  4UY2 A;  5BRX A;  4ILA A;  2Y58 A;  5L4H A;  3C79 A;  2XYS A;  4A98 A;  4ZR6 A;  5AIN A;  4QAC A;  4XHE A;  4HFH A;  3P50 A;  2ZJU A;  4HFI A;  4D01 A;  3UQ7 A;  3TLW A;  4A97 A;  5HEO A;  5CFB A;  5J5I A;  2WNC A;  1UX2 A;  2XYT A;  2XQA A;  5HCM A;  3JAE A;  4ALX A;  1I9B A;  4TWD A;  5BW2 A;  2XNT A;  2XZ5 A;  5HEJ A;  2C9T A;  4AFH A;  2BYQ A;  3WTK A;  2XQ8 A;  4AFT A;  4LMK A;  4BQT A;  3U8K A;  4ZJT A;  2BYS A;  3SQ9 A;  2YKS A;  3LSV A;  3UU5 A;  4B5D A;  4HFE A;  5HCJ A;  3ZDG A;  5HEG A;  4ZRU A;  2YOE A;  3UUB A;  3SH1 A;  3SQ6 A;  2BR8 A;  5J5F A;  3U8M A;  5AFJ A;  2QC1 B;  3UQ4 A;  5BP0 A;  4IL9 A;  5AFM A;  4QH5 A;  2XNV A;  4ZZB A;  3PMZ A;  3EAM A;  5AFN A; 
#chains in the Genus database with same CATH topology
 4QH4 A;  2BYR A;  3GUA A;  4XK9 A;  3JAF A;  2BG9 A;  3RQW A;  4ZJS A;  3SIO A;  3IGQ A;  4PIR A;  2WNJ A;  2XQ9 A;  4ZZC A;  3TLU A;  4HFC A;  1UW6 A;  5KZU A;  5L47 A;  2BYN A;  2YMD A;  4TWH A;  2PGZ A;  3U8N A;  2BG9 C;  2BYP A;  4FRR A;  3U8L A;  3UU3 A;  2XQ4 A;  3UU6 A;  4QH1 A;  2YN6 A;  4QAB A;  3P4W A;  4IRE A;  2W8G A;  3WTN A;  4UM3 S;  4Z90 A;  2VL0 A;  3RIA A;  3WTI A;  4ZK1 A;  5LG3 A;  4TWF A;  4ZK4 A;  4QAA A;  2YME A;  2BJ0 A;  2XQ6 A;  3WTH A;  3WTL A;  5AFL A;  5L4E A;  4X5T A;  4IL4 A;  3RIF A;  3WTM A;  3T4M A;  4HFD A;  3PEO A;  3TLS A;  2X00 A;  3TLV A;  4F8H A;  3TLT A;  3UU8 A;  2XQ7 A;  5HEU A;  5AFH A;  2Y54 A;  4Z91 A;  5TVC A;  3C84 A;  3ZDH A;  5CO5 A;  2XQ5 A;  5AFM B;  2WNL A;  4TNW A;  4UM3 A;  4EZ1 A;  3WTO A;  4BFQ A;  5HEH A;  2XQ3 A;  3JAD A;  5FJV A;  5J0Z A;  3ZKR A;  3RI5 A;  4UM1 A;  2BG9 B;  4ILB A;  2W8F A;  4UXU A;  5IUX A;  2UZ6 A;  5J5H A;  3WIP A;  4TNV A;  2XNU A;  4AFG A;  4ILC A;  3RHW A;  2BG9 E;  2X00 D;  3U8J A;  3WTJ A;  2XZ6 A;  4LMJ A;  4UM3 P;  3EHZ A;  2Y7Y A;  4WV9 A;  4DBM A;  4HQP A;  4HFB A;  4NPP A;  2ZJV A;  5AFK A;  5LXB A;  2BR7 A;  4LML A;  5KE4 A;  2WZY A;  4NZB A;  1UV6 A;  2WN9 A;  5J5G A;  5SYO A;  5JME A;  2Y57 A;  3RQU A;  2Y56 A;  3EI0 A;  2PH9 A;  3UU4 A;  4COF A;  4UY2 A;  5BRX A;  4ILA A;  2Y58 A;  5L4H A;  3C79 A;  2XYS A;  4A98 A;  4ZR6 A;  5AIN A;  4QAC A;  4XHE A;  4HFH A;  3P50 A;  2ZJU A;  4HFI A;  4D01 A;  3UQ7 A;  3TLW A;  4A97 A;  5HEO A;  5CFB A;  5J5I A;  2WNC A;  1UX2 A;  2XYT A;  2XQA A;  5HCM A;  3JAE A;  4ALX A;  1I9B A;  4TWD A;  5BW2 A;  2XNT A;  2XZ5 A;  5HEJ A;  2C9T A;  4AFH A;  2BYQ A;  3WTK A;  2XQ8 A;  4AFT A;  4LMK A;  4BQT A;  3U8K A;  4ZJT A;  2BYS A;  3SQ9 A;  2YKS A;  3LSV A;  3UU5 A;  4B5D A;  4HFE A;  5HCJ A;  3ZDG A;  5HEG A;  4ZRU A;  2YOE A;  3UUB A;  3SH1 A;  3SQ6 A;  2BR8 A;  5J5F A;  3U8M A;  5AFJ A;  2QC1 B;  3UQ4 A;  5BP0 A;  4IL9 A;  5AFM A;  4QH5 A;  2XNV A;  4ZZB A;  3PMZ A;  3EAM A;  5AFN A; 
#chains in the Genus database with same CATH homology
 4QH4 A;  2BYR A;  3GUA A;  4XK9 A;  3JAF A;  2BG9 A;  3RQW A;  4ZJS A;  3SIO A;  3IGQ A;  4PIR A;  2WNJ A;  2XQ9 A;  4ZZC A;  3TLU A;  4HFC A;  1UW6 A;  5KZU A;  5L47 A;  2BYN A;  2YMD A;  4TWH A;  2PGZ A;  3U8N A;  2BG9 C;  2BYP A;  4FRR A;  3U8L A;  3UU3 A;  2XQ4 A;  3UU6 A;  4QH1 A;  2YN6 A;  4QAB A;  3P4W A;  4IRE A;  2W8G A;  3WTN A;  4UM3 S;  4Z90 A;  2VL0 A;  3RIA A;  3WTI A;  4ZK1 A;  5LG3 A;  4TWF A;  4ZK4 A;  4QAA A;  2YME A;  2BJ0 A;  2XQ6 A;  3WTH A;  3WTL A;  5AFL A;  5L4E A;  4X5T A;  4IL4 A;  3RIF A;  3WTM A;  3T4M A;  4HFD A;  3PEO A;  3TLS A;  2X00 A;  3TLV A;  4F8H A;  3TLT A;  3UU8 A;  2XQ7 A;  5HEU A;  5AFH A;  2Y54 A;  4Z91 A;  5TVC A;  3C84 A;  3ZDH A;  5CO5 A;  2XQ5 A;  5AFM B;  2WNL A;  4TNW A;  4UM3 A;  4EZ1 A;  3WTO A;  4BFQ A;  5HEH A;  2XQ3 A;  3JAD A;  5FJV A;  5J0Z A;  3ZKR A;  3RI5 A;  4UM1 A;  2BG9 B;  4ILB A;  2W8F A;  4UXU A;  5IUX A;  2UZ6 A;  5J5H A;  3WIP A;  4TNV A;  2XNU A;  4AFG A;  4ILC A;  3RHW A;  2BG9 E;  2X00 D;  3U8J A;  3WTJ A;  2XZ6 A;  4LMJ A;  4UM3 P;  3EHZ A;  2Y7Y A;  4WV9 A;  4DBM A;  4HQP A;  4HFB A;  4NPP A;  2ZJV A;  5AFK A;  5LXB A;  2BR7 A;  4LML A;  5KE4 A;  2WZY A;  4NZB A;  1UV6 A;  2WN9 A;  5J5G A;  5SYO A;  5JME A;  2Y57 A;  3RQU A;  2Y56 A;  3EI0 A;  2PH9 A;  3UU4 A;  4COF A;  4UY2 A;  5BRX A;  4ILA A;  2Y58 A;  5L4H A;  3C79 A;  2XYS A;  4A98 A;  4ZR6 A;  5AIN A;  4QAC A;  4XHE A;  4HFH A;  3P50 A;  2ZJU A;  4HFI A;  4D01 A;  3UQ7 A;  3TLW A;  4A97 A;  5HEO A;  5CFB A;  5J5I A;  2WNC A;  1UX2 A;  2XYT A;  2XQA A;  5HCM A;  3JAE A;  4ALX A;  1I9B A;  4TWD A;  5BW2 A;  2XNT A;  2XZ5 A;  5HEJ A;  2C9T A;  4AFH A;  2BYQ A;  3WTK A;  2XQ8 A;  4AFT A;  4LMK A;  4BQT A;  3U8K A;  4ZJT A;  2BYS A;  3SQ9 A;  2YKS A;  3LSV A;  3UU5 A;  4B5D A;  4HFE A;  5HCJ A;  3ZDG A;  5HEG A;  4ZRU A;  2YOE A;  3UUB A;  3SH1 A;  3SQ6 A;  2BR8 A;  5J5F A;  3U8M A;  5AFJ A;  2QC1 B;  3UQ4 A;  5BP0 A;  4IL9 A;  5AFM A;  4QH5 A;  2XNV A;  4ZZB A;  3PMZ A;  3EAM A;  5AFN A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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