1UX2 | Genus

Total Genus 51

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	51
sequence length	207
structure length	207
Chain Sequence	VEFDRADILYNIRQTSRPDVIPTQRDRPVAVSVSLKFINILEVNEITNEVDVVFWQQTTWSDRTLAWNSSHSPDQVSVPISSLWVPDLAAYNAISKPEVLTPQLARVVSDGEVLYMPSIRQRFSCDVSGVDTESGATCRIKIGSWTHHSREISVDPTTENSDDSEYFSQYSRFEILDVTQKKNSVTYSCCPEAYEDVEVSLNFRKKG

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Glycoprotein
source organism	Lymnaea stagnalis
publication title	Nicotine and Carbamylcholine Binding to Nicotinic Acetylcholine Receptors as Studied in Achbp Crystal Structures pubmed doi rcsb
molecule keywords	ACETYLCHOLINE BINDING PROTEIN
total genus	51
structure length	207
sequence length	207
chains with identical sequence	B, C, D, E, F, G, H, I, J
ec nomenclature
pdb deposition date	2004-02-18

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF02931	Neur_chan_LBD	Neurotransmitter-gated ion-channel ligand binding domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.70.170.10	Mainly Beta	Distorted Sandwich	Acetylcholine Binding Protein; Chain: A,	Neurotransmitter-gated ion-channel ligand-binding domain	1ux2A00

4QAAA 2W8GA 4QH4A 5KE4A 4BQTA 3P4WA 3WTOA 1UV6A 2YOEA 4UM1A 2XQ9A 3ZKRA 5HEUA 5AFMB 5CFBA 5L4HA 5FJVA 4NZBA 5HCMA 4ZZCA 2BG9B 5KZUA 2BYQA 5J0ZA 3C84A 4UY2A 4ILAA 4XHEA 3UQ4A 4HFEA 2BYPA 4AFTA 2YMEA 3RIAA 2XQ6A 3WTIA 4UM3P 5HEOA 3WIPA 2BG9A 2WNJA 3SH1A 3IGQA 3JADA 5AFNA 4ZJSA 4TWFA 5BW2A 5L47A 2X00A 2Y56A 5AFJA 3UQ7A 2XQ4A 3WTKA 2PH9A 5AFLA 3UUBA 2BYRA 3U8MA 2WNCA 3UU5A 5J5GA 3RQWA 3TLUA 5J5FA 3WTHA 2BJ0A 3EHZA 4PIRA 4TNVA 5HEGA 4EZ1A 3U8KA 4UM3S 5BRXA 3JAEA 3GUAA 3WTJA 2YKSA 3SQ6A 2W8FA 5CO5A 3ZDHA 5AFKA 2C9TA 2XZ5A 5J5HA 5AFMA 4UXUA 4TNWA 1UW6A 3EI0A 4A98A 4ZRUA 3RHWA 2BYNA 4X5TA 4ILCA 2XNUA 2Y7YA 2YMDA 4A97A 2Y54A 2YN6A 4IL4A 3UU6A 3TLVA 2XNVA 3WTNA 1UX2A 4B5DA 4QABA 4HFDA 4WV9A 3U8NA 5SYOA 2Y57A 4D01A 3JAFA 4XK9A 3UU3A 4ZJTA 2ZJVA 3SIOA 2XQ5A 2XQ8A 4AFGA 2Y58A 3TLSA 5TVCA 5HCJA 4HFHA 4LMKA 2ZJUA 3TLWA 3RQUA 3UU4A 3WTMA 5BP0A 2X00D 4TWHA 3U8JA 4BFQA 2XQAA 4Z91A 3UU8A 4ZK4A 3WTLA 3U8LA 5JMEA 3PEOA 4ILBA 4QH1A 5LG3A 4Z90A 2BR7A 3RI5A 4DBMA 4HQPA 4FRRA 4HFBA 2XYTA 3SQ9A 4ZK1A 2XQ3A 4QH5A 4UM3A 2XQ7A 4IL9A 5IUXA 2BG9C 2BG9E 2VL0A 4LMJA 2QC1B 4TWDA 4ALXA 3T4MA 4AFHA 3TLTA 2WNLA 5HEHA 2WZYA 4IREA 2XYSA 2XZ6A 3LSVA 5AINA 2XNTA 2BR8A 2UZ6A 4COFA 4NPPA 5HEJA 3P50A 5LXBA 5AFHA 3C79A 3PMZA 4HFCA 4LMLA 3ZDGA 4ZZBA 2PGZA 3EAMA 4HFIA 4QACA 4ZR6A 1I9BA 2WN9A 3RIFA 5J5IA 4F8HA 2BYSA 5L4EA
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 4QAA A;  2W8G A;  4QH4 A;  5KE4 A;  4BQT A;  3P4W A;  3WTO A;  1UV6 A;  2YOE A;  4UM1 A;  2XQ9 A;  3ZKR A;  5HEU A;  5AFM B;  5CFB A;  5L4H A;  5FJV A;  4NZB A;  5HCM A;  4ZZC A;  2BG9 B;  5KZU A;  2BYQ A;  5J0Z A;  3C84 A;  4UY2 A;  4ILA A;  4XHE A;  3UQ4 A;  4HFE A;  2BYP A;  4AFT A;  2YME A;  3RIA A;  2XQ6 A;  3WTI A;  4UM3 P;  5HEO A;  3WIP A;  2BG9 A;  2WNJ A;  3SH1 A;  3IGQ A;  3JAD A;  5AFN A;  4ZJS A;  4TWF A;  5BW2 A;  5L47 A;  2X00 A;  2Y56 A;  5AFJ A;  3UQ7 A;  2XQ4 A;  3WTK A;  2PH9 A;  5AFL A;  3UUB A;  2BYR A;  3U8M A;  2WNC A;  3UU5 A;  5J5G A;  3RQW A;  3TLU A;  5J5F A;  3WTH A;  2BJ0 A;  3EHZ A;  4PIR A;  4TNV A;  5HEG A;  4EZ1 A;  3U8K A;  4UM3 S;  5BRX A;  3JAE A;  3GUA A;  3WTJ A;  2YKS A;  3SQ6 A;  2W8F A;  5CO5 A;  3ZDH A;  5AFK A;  2C9T A;  2XZ5 A;  5J5H A;  5AFM A;  4UXU A;  4TNW A;  1UW6 A;  3EI0 A;  4A98 A;  4ZRU A;  3RHW A;  2BYN A;  4X5T A;  4ILC A;  2XNU A;  2Y7Y A;  2YMD A;  4A97 A;  2Y54 A;  2YN6 A;  4IL4 A;  3UU6 A;  3TLV A;  2XNV A;  3WTN A;  1UX2 A;  4B5D A;  4QAB A;  4HFD A;  4WV9 A;  3U8N A;  5SYO A;  2Y57 A;  4D01 A;  3JAF A;  4XK9 A;  3UU3 A;  4ZJT A;  2ZJV A;  3SIO A;  2XQ5 A;  2XQ8 A;  4AFG A;  2Y58 A;  3TLS A;  5TVC A;  5HCJ A;  4HFH A;  4LMK A;  2ZJU A;  3TLW A;  3RQU A;  3UU4 A;  3WTM A;  5BP0 A;  2X00 D;  4TWH A;  3U8J A;  4BFQ A;  2XQA A;  4Z91 A;  3UU8 A;  4ZK4 A;  3WTL A;  3U8L A;  5JME A;  3PEO A;  4ILB A;  4QH1 A;  5LG3 A;  4Z90 A;  2BR7 A;  3RI5 A;  4DBM A;  4HQP A;  4FRR A;  4HFB A;  2XYT A;  3SQ9 A;  4ZK1 A;  2XQ3 A;  4QH5 A;  4UM3 A;  2XQ7 A;  4IL9 A;  5IUX A;  2BG9 C;  2BG9 E;  2VL0 A;  4LMJ A;  2QC1 B;  4TWD A;  4ALX A;  3T4M A;  4AFH A;  3TLT A;  2WNL A;  5HEH A;  2WZY A;  4IRE A;  2XYS A;  2XZ6 A;  3LSV A;  5AIN A;  2XNT A;  2BR8 A;  2UZ6 A;  4COF A;  4NPP A;  5HEJ A;  3P50 A;  5LXB A;  5AFH A;  3C79 A;  3PMZ A;  4HFC A;  4LML A;  3ZDG A;  4ZZB A;  2PGZ A;  3EAM A;  4HFI A;  4QAC A;  4ZR6 A;  1I9B A;  2WN9 A;  3RIF A;  5J5I A;  4F8H A;  2BYS A;  5L4E A; 
#chains in the Genus database with same CATH topology
 4QAA A;  2W8G A;  4QH4 A;  5KE4 A;  4BQT A;  3P4W A;  3WTO A;  1UV6 A;  2YOE A;  4UM1 A;  2XQ9 A;  3ZKR A;  5HEU A;  5AFM B;  5CFB A;  5L4H A;  5FJV A;  4NZB A;  5HCM A;  4ZZC A;  2BG9 B;  5KZU A;  2BYQ A;  5J0Z A;  3C84 A;  4UY2 A;  4ILA A;  4XHE A;  3UQ4 A;  4HFE A;  2BYP A;  4AFT A;  2YME A;  3RIA A;  2XQ6 A;  3WTI A;  4UM3 P;  5HEO A;  3WIP A;  2BG9 A;  2WNJ A;  3SH1 A;  3IGQ A;  3JAD A;  5AFN A;  4ZJS A;  4TWF A;  5BW2 A;  5L47 A;  2X00 A;  2Y56 A;  5AFJ A;  3UQ7 A;  2XQ4 A;  3WTK A;  2PH9 A;  5AFL A;  3UUB A;  2BYR A;  3U8M A;  2WNC A;  3UU5 A;  5J5G A;  3RQW A;  3TLU A;  5J5F A;  3WTH A;  2BJ0 A;  3EHZ A;  4PIR A;  4TNV A;  5HEG A;  4EZ1 A;  3U8K A;  4UM3 S;  5BRX A;  3JAE A;  3GUA A;  3WTJ A;  2YKS A;  3SQ6 A;  2W8F A;  5CO5 A;  3ZDH A;  5AFK A;  2C9T A;  2XZ5 A;  5J5H A;  5AFM A;  4UXU A;  4TNW A;  1UW6 A;  3EI0 A;  4A98 A;  4ZRU A;  3RHW A;  2BYN A;  4X5T A;  4ILC A;  2XNU A;  2Y7Y A;  2YMD A;  4A97 A;  2Y54 A;  2YN6 A;  4IL4 A;  3UU6 A;  3TLV A;  2XNV A;  3WTN A;  1UX2 A;  4B5D A;  4QAB A;  4HFD A;  4WV9 A;  3U8N A;  5SYO A;  2Y57 A;  4D01 A;  3JAF A;  4XK9 A;  3UU3 A;  4ZJT A;  2ZJV A;  3SIO A;  2XQ5 A;  2XQ8 A;  4AFG A;  2Y58 A;  3TLS A;  5TVC A;  5HCJ A;  4HFH A;  4LMK A;  2ZJU A;  3TLW A;  3RQU A;  3UU4 A;  3WTM A;  5BP0 A;  2X00 D;  4TWH A;  3U8J A;  4BFQ A;  2XQA A;  4Z91 A;  3UU8 A;  4ZK4 A;  3WTL A;  3U8L A;  5JME A;  3PEO A;  4ILB A;  4QH1 A;  5LG3 A;  4Z90 A;  2BR7 A;  3RI5 A;  4DBM A;  4HQP A;  4FRR A;  4HFB A;  2XYT A;  3SQ9 A;  4ZK1 A;  2XQ3 A;  4QH5 A;  4UM3 A;  2XQ7 A;  4IL9 A;  5IUX A;  2BG9 C;  2BG9 E;  2VL0 A;  4LMJ A;  2QC1 B;  4TWD A;  4ALX A;  3T4M A;  4AFH A;  3TLT A;  2WNL A;  5HEH A;  2WZY A;  4IRE A;  2XYS A;  2XZ6 A;  3LSV A;  5AIN A;  2XNT A;  2BR8 A;  2UZ6 A;  4COF A;  4NPP A;  5HEJ A;  3P50 A;  5LXB A;  5AFH A;  3C79 A;  3PMZ A;  4HFC A;  4LML A;  3ZDG A;  4ZZB A;  2PGZ A;  3EAM A;  4HFI A;  4QAC A;  4ZR6 A;  1I9B A;  2WN9 A;  3RIF A;  5J5I A;  4F8H A;  2BYS A;  5L4E A; 
#chains in the Genus database with same CATH homology
 4QAA A;  2W8G A;  4QH4 A;  5KE4 A;  4BQT A;  3P4W A;  3WTO A;  1UV6 A;  2YOE A;  4UM1 A;  2XQ9 A;  3ZKR A;  5HEU A;  5AFM B;  5CFB A;  5L4H A;  5FJV A;  4NZB A;  5HCM A;  4ZZC A;  2BG9 B;  5KZU A;  2BYQ A;  5J0Z A;  3C84 A;  4UY2 A;  4ILA A;  4XHE A;  3UQ4 A;  4HFE A;  2BYP A;  4AFT A;  2YME A;  3RIA A;  2XQ6 A;  3WTI A;  4UM3 P;  5HEO A;  3WIP A;  2BG9 A;  2WNJ A;  3SH1 A;  3IGQ A;  3JAD A;  5AFN A;  4ZJS A;  4TWF A;  5BW2 A;  5L47 A;  2X00 A;  2Y56 A;  5AFJ A;  3UQ7 A;  2XQ4 A;  3WTK A;  2PH9 A;  5AFL A;  3UUB A;  2BYR A;  3U8M A;  2WNC A;  3UU5 A;  5J5G A;  3RQW A;  3TLU A;  5J5F A;  3WTH A;  2BJ0 A;  3EHZ A;  4PIR A;  4TNV A;  5HEG A;  4EZ1 A;  3U8K A;  4UM3 S;  5BRX A;  3JAE A;  3GUA A;  3WTJ A;  2YKS A;  3SQ6 A;  2W8F A;  5CO5 A;  3ZDH A;  5AFK A;  2C9T A;  2XZ5 A;  5J5H A;  5AFM A;  4UXU A;  4TNW A;  1UW6 A;  3EI0 A;  4A98 A;  4ZRU A;  3RHW A;  2BYN A;  4X5T A;  4ILC A;  2XNU A;  2Y7Y A;  2YMD A;  4A97 A;  2Y54 A;  2YN6 A;  4IL4 A;  3UU6 A;  3TLV A;  2XNV A;  3WTN A;  1UX2 A;  4B5D A;  4QAB A;  4HFD A;  4WV9 A;  3U8N A;  5SYO A;  2Y57 A;  4D01 A;  3JAF A;  4XK9 A;  3UU3 A;  4ZJT A;  2ZJV A;  3SIO A;  2XQ5 A;  2XQ8 A;  4AFG A;  2Y58 A;  3TLS A;  5TVC A;  5HCJ A;  4HFH A;  4LMK A;  2ZJU A;  3TLW A;  3RQU A;  3UU4 A;  3WTM A;  5BP0 A;  2X00 D;  4TWH A;  3U8J A;  4BFQ A;  2XQA A;  4Z91 A;  3UU8 A;  4ZK4 A;  3WTL A;  3U8L A;  5JME A;  3PEO A;  4ILB A;  4QH1 A;  5LG3 A;  4Z90 A;  2BR7 A;  3RI5 A;  4DBM A;  4HQP A;  4FRR A;  4HFB A;  2XYT A;  3SQ9 A;  4ZK1 A;  2XQ3 A;  4QH5 A;  4UM3 A;  2XQ7 A;  4IL9 A;  5IUX A;  2BG9 C;  2BG9 E;  2VL0 A;  4LMJ A;  2QC1 B;  4TWD A;  4ALX A;  3T4M A;  4AFH A;  3TLT A;  2WNL A;  5HEH A;  2WZY A;  4IRE A;  2XYS A;  2XZ6 A;  3LSV A;  5AIN A;  2XNT A;  2BR8 A;  2UZ6 A;  4COF A;  4NPP A;  5HEJ A;  3P50 A;  5LXB A;  5AFH A;  3C79 A;  3PMZ A;  4HFC A;  4LML A;  3ZDG A;  4ZZB A;  2PGZ A;  3EAM A;  4HFI A;  4QAC A;  4ZR6 A;  1I9B A;  2WN9 A;  3RIF A;  5J5I A;  4F8H A;  2BYS A;  5L4E A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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1UX2A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations