2BYRA

Crystal structure of achbp from aplysia californica in complex with methyllycaconitine
Total Genus 53

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
53
sequence length
213
structure length
213
Chain Sequence
DDDKLHSQANLMRLKSDLFNRSPMYPGPTKDDPLTVTLGFTLQDIVKADSSTNEVDLVYYEQQRWKLNSLMWDPNEYGNITDFRTSAADIWTPDITAYSSTRPVQVLSPQIAVVTHDGSVMFIPAQRLSFMCDPTGVDSEEGATCAVKFGSWVYSGFEIDLKTDTDQVDLSSYYASSKYEILSATQTRQVQHYSCCPEPYIDVNLVVKFRERR

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYS3 (77-81)S1 (29-44)3H1 (63-65)TI2 (44-47)TVIII2 (172-175)S11 (174-187)S2 (49-61)S5 (100-101)S7 (114-117)TI'1 (72-75)3H3 (82-84)TI5 (110-113)S4 (90-92)S6 (106-110)TI4 (92-95)TI8 (146-149)TII1 (129-132)O1 (127-140)S8 (120-126)S9 (138-146)TI6 (131-134)TI7 (134-137)TI9 (150-153)S10 (154-157)S12 (194-206)TI11 (165-168)TI12 (169-172)3H2 (69-71)TVIII1 (158-161)TI13 (188-191)AH1 (-4-16)Updating...
connected with : NaN
molecule tags Receptor
source organism Aplysia californica
publication title Structures of Aplysia Achbp Complexes with Nicotinic Agonists and Antagonists Reveal Distinctive Binding Interfaces and Conformations.
pubmed doi rcsb
molecule keywords ACETYLCHOLINE-BINDING PROTEIN
total genus 53
structure length 213
sequence length 213
chains with identical sequence B, C, D, E, F, G, H, I, J
ec nomenclature
pdb deposition date 2005-08-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02931 Neur_chan_LBD Neurotransmitter-gated ion-channel ligand binding domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.70.170.10 Mainly Beta Distorted Sandwich Acetylcholine Binding Protein; Chain: A, Neurotransmitter-gated ion-channel ligand-binding domain 2byrA00
4HFEA 4QACA 4ZRUA 4ZJSA 2Y56A 3PEOA 1I9BA 5HEOA 2BG9C 4XK9A 2W8FA 3U8KA 2BYPA 4ALXA 2XQ8A 4QH4A 3SQ6A 4QABA 5HCJA 3U8LA 4ILBA 4A97A 4EZ1A 4TWDA 2BYRA 4ZZBA 4NZBA 3EI0A 5J5GA 5SYOA 3T4MA 2BR8A 3RIAA 5AFHA 3ZDHA 3JADA 3P4WA 4LMLA 3SIOA 3EAMA 2XQ6A 4PIRA 2UZ6A 4HFDA 3WTKA 5CFBA 4XHEA 2PH9A 2XZ6A 2Y7YA 5J5IA 2BG9E 4BFQA 5LXBA 3TLSA 4HFIA 4UXUA 4TWHA 3SH1A 5BP0A 2BJ0A 3RQUA 2C9TA 3U8JA 2XQ7A 2XNTA 5HEHA 2BG9A 5HEUA 2BYNA 5IUXA 2WZYA 5L47A 2BYQA 2WNLA 3U8MA 4ZK4A 3RQWA 4NPPA 3WTHA 3UU6A 5AFMA 3UU3A 2QC1B 4UM1A 4UM3P 4TNVA 4HFHA 2YMDA 2XZ5A 5L4HA 4HFCA 4UM3A 4Z91A 4AFTA 3JAFA 2XNVA 4BQTA 5AFLA 4ZR6A 2ZJVA 4ILAA 4QH1A 2BG9B 3C79A 5BW2A 3RHWA 3JAEA 3TLWA 3PMZA 1UV6A 4Z90A 2WNCA 3WTMA 3ZKRA 2BYSA 2VL0A 3UU8A 3WTNA 5AFJA 4DBMA 3WTOA 4TNWA 5J5FA 4UY2A 5JMEA 5J0ZA 2XQAA 2XYSA 2Y57A 3WTLA 3EHZA 4IL4A 4D01A 5AFNA 2YKSA 4F8HA 4LMJA 2YN6A 3WIPA 2X00D 4AFGA 4FRRA 3C84A 3WTIA 4A98A 5KE4A 5L4EA 2Y58A 5LG3A 3TLVA 4IREA 5AFKA 1UW6A 4ZJTA 5J5HA 1UX2A 5HEJA 3IGQA 2XQ3A 5HEGA 2X00A 3RIFA 3SQ9A 5BRXA 4B5DA 3UQ7A 2XNUA 2ZJUA 5AINA 4TWFA 5KZUA 4QH5A 2YMEA 4UM3S 2WN9A 2BR7A 3RI5A 4ZZCA 4ZK1A 4COFA 3UQ4A 2W8GA 3UU4A 3TLTA 4HQPA 2XQ9A 5CO5A 4X5TA 5HCMA 4QAAA 4IL9A 3TLUA 4HFBA 3WTJA 5AFMB 2XQ4A 5FJVA 3ZDGA 3LSVA 2Y54A 3UU5A 3U8NA 5TVCA 2PGZA 3P50A 4ILCA 3UUBA 4WV9A 4AFHA 3GUAA 2XQ5A 4LMKA 2WNJA 2XYTA 2YOEA
chains in the Genus database with same CATH superfamily
4HFEA 4QACA 4ZRUA 4ZJSA 2Y56A 3PEOA 1I9BA 5HEOA 2BG9C 4XK9A 2W8FA 3U8KA 2BYPA 4ALXA 2XQ8A 4QH4A 3SQ6A 4QABA 5HCJA 3U8LA 4ILBA 4A97A 4EZ1A 4TWDA 2BYRA 4ZZBA 4NZBA 3EI0A 5J5GA 5SYOA 3T4MA 2BR8A 3RIAA 5AFHA 3ZDHA 3JADA 3P4WA 4LMLA 3SIOA 3EAMA 2XQ6A 4PIRA 2UZ6A 4HFDA 3WTKA 5CFBA 4XHEA 2PH9A 2XZ6A 2Y7YA 5J5IA 2BG9E 4BFQA 5LXBA 3TLSA 4HFIA 4UXUA 4TWHA 3SH1A 5BP0A 2BJ0A 3RQUA 2C9TA 3U8JA 2XQ7A 2XNTA 5HEHA 2BG9A 5HEUA 2BYNA 5IUXA 2WZYA 5L47A 2BYQA 2WNLA 3U8MA 4ZK4A 3RQWA 4NPPA 3WTHA 3UU6A 5AFMA 3UU3A 2QC1B 4UM1A 4UM3P 4TNVA 4HFHA 2YMDA 2XZ5A 5L4HA 4HFCA 4UM3A 4Z91A 4AFTA 3JAFA 2XNVA 4BQTA 5AFLA 4ZR6A 2ZJVA 4ILAA 4QH1A 2BG9B 3C79A 5BW2A 3RHWA 3JAEA 3TLWA 3PMZA 1UV6A 4Z90A 2WNCA 3WTMA 3ZKRA 2BYSA 2VL0A 3UU8A 3WTNA 5AFJA 4DBMA 3WTOA 4TNWA 5J5FA 4UY2A 5JMEA 5J0ZA 2XQAA 2XYSA 2Y57A 3WTLA 3EHZA 4IL4A 4D01A 5AFNA 2YKSA 4F8HA 4LMJA 2YN6A 3WIPA 2X00D 4AFGA 4FRRA 3C84A 3WTIA 4A98A 5KE4A 5L4EA 2Y58A 5LG3A 3TLVA 4IREA 5AFKA 1UW6A 4ZJTA 5J5HA 1UX2A 5HEJA 3IGQA 2XQ3A 5HEGA 2X00A 3RIFA 3SQ9A 5BRXA 4B5DA 3UQ7A 2XNUA 2ZJUA 5AINA 4TWFA 5KZUA 4QH5A 2YMEA 4UM3S 2WN9A 2BR7A 3RI5A 4ZZCA 4ZK1A 4COFA 3UQ4A 2W8GA 3UU4A 3TLTA 4HQPA 2XQ9A 5CO5A 4X5TA 5HCMA 4QAAA 4IL9A 3TLUA 4HFBA 3WTJA 5AFMB 2XQ4A 5FJVA 3ZDGA 3LSVA 2Y54A 3UU5A 3U8NA 5TVCA 2PGZA 3P50A 4ILCA 3UUBA 4WV9A 4AFHA 3GUAA 2XQ5A 4LMKA 2WNJA 2XYTA 2YOEA
chains in the Genus database with same CATH topology
4HFEA 4QACA 4ZRUA 4ZJSA 2Y56A 3PEOA 1I9BA 5HEOA 2BG9C 4XK9A 2W8FA 3U8KA 2BYPA 4ALXA 2XQ8A 4QH4A 3SQ6A 4QABA 5HCJA 3U8LA 4ILBA 4A97A 4EZ1A 4TWDA 2BYRA 4ZZBA 4NZBA 3EI0A 5J5GA 5SYOA 3T4MA 2BR8A 3RIAA 5AFHA 3ZDHA 3JADA 3P4WA 4LMLA 3SIOA 3EAMA 2XQ6A 4PIRA 2UZ6A 4HFDA 3WTKA 5CFBA 4XHEA 2PH9A 2XZ6A 2Y7YA 5J5IA 2BG9E 4BFQA 5LXBA 3TLSA 4HFIA 4UXUA 4TWHA 3SH1A 5BP0A 2BJ0A 3RQUA 2C9TA 3U8JA 2XQ7A 2XNTA 5HEHA 2BG9A 5HEUA 2BYNA 5IUXA 2WZYA 5L47A 2BYQA 2WNLA 3U8MA 4ZK4A 3RQWA 4NPPA 3WTHA 3UU6A 5AFMA 3UU3A 2QC1B 4UM1A 4UM3P 4TNVA 4HFHA 2YMDA 2XZ5A 5L4HA 4HFCA 4UM3A 4Z91A 4AFTA 3JAFA 2XNVA 4BQTA 5AFLA 4ZR6A 2ZJVA 4ILAA 4QH1A 2BG9B 3C79A 5BW2A 3RHWA 3JAEA 3TLWA 3PMZA 1UV6A 4Z90A 2WNCA 3WTMA 3ZKRA 2BYSA 2VL0A 3UU8A 3WTNA 5AFJA 4DBMA 3WTOA 4TNWA 5J5FA 4UY2A 5JMEA 5J0ZA 2XQAA 2XYSA 2Y57A 3WTLA 3EHZA 4IL4A 4D01A 5AFNA 2YKSA 4F8HA 4LMJA 2YN6A 3WIPA 2X00D 4AFGA 4FRRA 3C84A 3WTIA 4A98A 5KE4A 5L4EA 2Y58A 5LG3A 3TLVA 4IREA 5AFKA 1UW6A 4ZJTA 5J5HA 1UX2A 5HEJA 3IGQA 2XQ3A 5HEGA 2X00A 3RIFA 3SQ9A 5BRXA 4B5DA 3UQ7A 2XNUA 2ZJUA 5AINA 4TWFA 5KZUA 4QH5A 2YMEA 4UM3S 2WN9A 2BR7A 3RI5A 4ZZCA 4ZK1A 4COFA 3UQ4A 2W8GA 3UU4A 3TLTA 4HQPA 2XQ9A 5CO5A 4X5TA 5HCMA 4QAAA 4IL9A 3TLUA 4HFBA 3WTJA 5AFMB 2XQ4A 5FJVA 3ZDGA 3LSVA 2Y54A 3UU5A 3U8NA 5TVCA 2PGZA 3P50A 4ILCA 3UUBA 4WV9A 4AFHA 3GUAA 2XQ5A 4LMKA 2WNJA 2XYTA 2YOEA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4HFE A;  4QAC A;  4ZRU A;  4ZJS A;  2Y56 A;  3PEO A;  1I9B A;  5HEO A;  2BG9 C;  4XK9 A;  2W8F A;  3U8K A;  2BYP A;  4ALX A;  2XQ8 A;  4QH4 A;  3SQ6 A;  4QAB A;  5HCJ A;  3U8L A;  4ILB A;  4A97 A;  4EZ1 A;  4TWD A;  2BYR A;  4ZZB A;  4NZB A;  3EI0 A;  5J5G A;  5SYO A;  3T4M A;  2BR8 A;  3RIA A;  5AFH A;  3ZDH A;  3JAD A;  3P4W A;  4LML A;  3SIO A;  3EAM A;  2XQ6 A;  4PIR A;  2UZ6 A;  4HFD A;  3WTK A;  5CFB A;  4XHE A;  2PH9 A;  2XZ6 A;  2Y7Y A;  5J5I A;  2BG9 E;  4BFQ A;  5LXB A;  3TLS A;  4HFI A;  4UXU A;  4TWH A;  3SH1 A;  5BP0 A;  2BJ0 A;  3RQU A;  2C9T A;  3U8J A;  2XQ7 A;  2XNT A;  5HEH A;  2BG9 A;  5HEU A;  2BYN A;  5IUX A;  2WZY A;  5L47 A;  2BYQ A;  2WNL A;  3U8M A;  4ZK4 A;  3RQW A;  4NPP A;  3WTH A;  3UU6 A;  5AFM A;  3UU3 A;  2QC1 B;  4UM1 A;  4UM3 P;  4TNV A;  4HFH A;  2YMD A;  2XZ5 A;  5L4H A;  4HFC A;  4UM3 A;  4Z91 A;  4AFT A;  3JAF A;  2XNV A;  4BQT A;  5AFL A;  4ZR6 A;  2ZJV A;  4ILA A;  4QH1 A;  2BG9 B;  3C79 A;  5BW2 A;  3RHW A;  3JAE A;  3TLW A;  3PMZ A;  1UV6 A;  4Z90 A;  2WNC A;  3WTM A;  3ZKR A;  2BYS A;  2VL0 A;  3UU8 A;  3WTN A;  5AFJ A;  4DBM A;  3WTO A;  4TNW A;  5J5F A;  4UY2 A;  5JME A;  5J0Z A;  2XQA A;  2XYS A;  2Y57 A;  3WTL A;  3EHZ A;  4IL4 A;  4D01 A;  5AFN A;  2YKS A;  4F8H A;  4LMJ A;  2YN6 A;  3WIP A;  2X00 D;  4AFG A;  4FRR A;  3C84 A;  3WTI A;  4A98 A;  5KE4 A;  5L4E A;  2Y58 A;  5LG3 A;  3TLV A;  4IRE A;  5AFK A;  1UW6 A;  4ZJT A;  5J5H A;  1UX2 A;  5HEJ A;  3IGQ A;  2XQ3 A;  5HEG A;  2X00 A;  3RIF A;  3SQ9 A;  5BRX A;  4B5D A;  3UQ7 A;  2XNU A;  2ZJU A;  5AIN A;  4TWF A;  5KZU A;  4QH5 A;  2YME A;  4UM3 S;  2WN9 A;  2BR7 A;  3RI5 A;  4ZZC A;  4ZK1 A;  4COF A;  3UQ4 A;  2W8G A;  3UU4 A;  3TLT A;  4HQP A;  2XQ9 A;  5CO5 A;  4X5T A;  5HCM A;  4QAA A;  4IL9 A;  3TLU A;  4HFB A;  3WTJ A;  5AFM B;  2XQ4 A;  5FJV A;  3ZDG A;  3LSV A;  2Y54 A;  3UU5 A;  3U8N A;  5TVC A;  2PGZ A;  3P50 A;  4ILC A;  3UUB A;  4WV9 A;  4AFH A;  3GUA A;  2XQ5 A;  4LMK A;  2WNJ A;  2XYT A;  2YOE A; 
#chains in the Genus database with same CATH topology
 4HFE A;  4QAC A;  4ZRU A;  4ZJS A;  2Y56 A;  3PEO A;  1I9B A;  5HEO A;  2BG9 C;  4XK9 A;  2W8F A;  3U8K A;  2BYP A;  4ALX A;  2XQ8 A;  4QH4 A;  3SQ6 A;  4QAB A;  5HCJ A;  3U8L A;  4ILB A;  4A97 A;  4EZ1 A;  4TWD A;  2BYR A;  4ZZB A;  4NZB A;  3EI0 A;  5J5G A;  5SYO A;  3T4M A;  2BR8 A;  3RIA A;  5AFH A;  3ZDH A;  3JAD A;  3P4W A;  4LML A;  3SIO A;  3EAM A;  2XQ6 A;  4PIR A;  2UZ6 A;  4HFD A;  3WTK A;  5CFB A;  4XHE A;  2PH9 A;  2XZ6 A;  2Y7Y A;  5J5I A;  2BG9 E;  4BFQ A;  5LXB A;  3TLS A;  4HFI A;  4UXU A;  4TWH A;  3SH1 A;  5BP0 A;  2BJ0 A;  3RQU A;  2C9T A;  3U8J A;  2XQ7 A;  2XNT A;  5HEH A;  2BG9 A;  5HEU A;  2BYN A;  5IUX A;  2WZY A;  5L47 A;  2BYQ A;  2WNL A;  3U8M A;  4ZK4 A;  3RQW A;  4NPP A;  3WTH A;  3UU6 A;  5AFM A;  3UU3 A;  2QC1 B;  4UM1 A;  4UM3 P;  4TNV A;  4HFH A;  2YMD A;  2XZ5 A;  5L4H A;  4HFC A;  4UM3 A;  4Z91 A;  4AFT A;  3JAF A;  2XNV A;  4BQT A;  5AFL A;  4ZR6 A;  2ZJV A;  4ILA A;  4QH1 A;  2BG9 B;  3C79 A;  5BW2 A;  3RHW A;  3JAE A;  3TLW A;  3PMZ A;  1UV6 A;  4Z90 A;  2WNC A;  3WTM A;  3ZKR A;  2BYS A;  2VL0 A;  3UU8 A;  3WTN A;  5AFJ A;  4DBM A;  3WTO A;  4TNW A;  5J5F A;  4UY2 A;  5JME A;  5J0Z A;  2XQA A;  2XYS A;  2Y57 A;  3WTL A;  3EHZ A;  4IL4 A;  4D01 A;  5AFN A;  2YKS A;  4F8H A;  4LMJ A;  2YN6 A;  3WIP A;  2X00 D;  4AFG A;  4FRR A;  3C84 A;  3WTI A;  4A98 A;  5KE4 A;  5L4E A;  2Y58 A;  5LG3 A;  3TLV A;  4IRE A;  5AFK A;  1UW6 A;  4ZJT A;  5J5H A;  1UX2 A;  5HEJ A;  3IGQ A;  2XQ3 A;  5HEG A;  2X00 A;  3RIF A;  3SQ9 A;  5BRX A;  4B5D A;  3UQ7 A;  2XNU A;  2ZJU A;  5AIN A;  4TWF A;  5KZU A;  4QH5 A;  2YME A;  4UM3 S;  2WN9 A;  2BR7 A;  3RI5 A;  4ZZC A;  4ZK1 A;  4COF A;  3UQ4 A;  2W8G A;  3UU4 A;  3TLT A;  4HQP A;  2XQ9 A;  5CO5 A;  4X5T A;  5HCM A;  4QAA A;  4IL9 A;  3TLU A;  4HFB A;  3WTJ A;  5AFM B;  2XQ4 A;  5FJV A;  3ZDG A;  3LSV A;  2Y54 A;  3UU5 A;  3U8N A;  5TVC A;  2PGZ A;  3P50 A;  4ILC A;  3UUB A;  4WV9 A;  4AFH A;  3GUA A;  2XQ5 A;  4LMK A;  2WNJ A;  2XYT A;  2YOE A; 
#chains in the Genus database with same CATH homology
 4HFE A;  4QAC A;  4ZRU A;  4ZJS A;  2Y56 A;  3PEO A;  1I9B A;  5HEO A;  2BG9 C;  4XK9 A;  2W8F A;  3U8K A;  2BYP A;  4ALX A;  2XQ8 A;  4QH4 A;  3SQ6 A;  4QAB A;  5HCJ A;  3U8L A;  4ILB A;  4A97 A;  4EZ1 A;  4TWD A;  2BYR A;  4ZZB A;  4NZB A;  3EI0 A;  5J5G A;  5SYO A;  3T4M A;  2BR8 A;  3RIA A;  5AFH A;  3ZDH A;  3JAD A;  3P4W A;  4LML A;  3SIO A;  3EAM A;  2XQ6 A;  4PIR A;  2UZ6 A;  4HFD A;  3WTK A;  5CFB A;  4XHE A;  2PH9 A;  2XZ6 A;  2Y7Y A;  5J5I A;  2BG9 E;  4BFQ A;  5LXB A;  3TLS A;  4HFI A;  4UXU A;  4TWH A;  3SH1 A;  5BP0 A;  2BJ0 A;  3RQU A;  2C9T A;  3U8J A;  2XQ7 A;  2XNT A;  5HEH A;  2BG9 A;  5HEU A;  2BYN A;  5IUX A;  2WZY A;  5L47 A;  2BYQ A;  2WNL A;  3U8M A;  4ZK4 A;  3RQW A;  4NPP A;  3WTH A;  3UU6 A;  5AFM A;  3UU3 A;  2QC1 B;  4UM1 A;  4UM3 P;  4TNV A;  4HFH A;  2YMD A;  2XZ5 A;  5L4H A;  4HFC A;  4UM3 A;  4Z91 A;  4AFT A;  3JAF A;  2XNV A;  4BQT A;  5AFL A;  4ZR6 A;  2ZJV A;  4ILA A;  4QH1 A;  2BG9 B;  3C79 A;  5BW2 A;  3RHW A;  3JAE A;  3TLW A;  3PMZ A;  1UV6 A;  4Z90 A;  2WNC A;  3WTM A;  3ZKR A;  2BYS A;  2VL0 A;  3UU8 A;  3WTN A;  5AFJ A;  4DBM A;  3WTO A;  4TNW A;  5J5F A;  4UY2 A;  5JME A;  5J0Z A;  2XQA A;  2XYS A;  2Y57 A;  3WTL A;  3EHZ A;  4IL4 A;  4D01 A;  5AFN A;  2YKS A;  4F8H A;  4LMJ A;  2YN6 A;  3WIP A;  2X00 D;  4AFG A;  4FRR A;  3C84 A;  3WTI A;  4A98 A;  5KE4 A;  5L4E A;  2Y58 A;  5LG3 A;  3TLV A;  4IRE A;  5AFK A;  1UW6 A;  4ZJT A;  5J5H A;  1UX2 A;  5HEJ A;  3IGQ A;  2XQ3 A;  5HEG A;  2X00 A;  3RIF A;  3SQ9 A;  5BRX A;  4B5D A;  3UQ7 A;  2XNU A;  2ZJU A;  5AIN A;  4TWF A;  5KZU A;  4QH5 A;  2YME A;  4UM3 S;  2WN9 A;  2BR7 A;  3RI5 A;  4ZZC A;  4ZK1 A;  4COF A;  3UQ4 A;  2W8G A;  3UU4 A;  3TLT A;  4HQP A;  2XQ9 A;  5CO5 A;  4X5T A;  5HCM A;  4QAA A;  4IL9 A;  3TLU A;  4HFB A;  3WTJ A;  5AFM B;  2XQ4 A;  5FJV A;  3ZDG A;  3LSV A;  2Y54 A;  3UU5 A;  3U8N A;  5TVC A;  2PGZ A;  3P50 A;  4ILC A;  3UUB A;  4WV9 A;  4AFH A;  3GUA A;  2XQ5 A;  4LMK A;  2WNJ A;  2XYT A;  2YOE A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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