2X00A

Crystal structure of a-achbp in complex with gymnodimine a
Total Genus 50

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
50
sequence length
216
structure length
216
Chain Sequence
YKDDDDKLHSQANLMRLKSDLFNRSPMYPGPTKDDPLTVTLGFTLQDIVKADSSTNEVDLVYYEQQRWKLNSLMWDPNEYGNITDFRTSAADIWTPDITAYSSTRPVQVLSPQIAVVTHDGSVMFIPAQRLSFMCDPTGVDSEEGATCAVKFGSWVYSGFEIDLKTDTDQVDLSSYYASSKYEILSATQTRQVQHYSCCPEPYIDVNLVVKFRERR

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYTI1 (24-27)S1 (29-44)TIV4 (158-161)TI10 (169-172)TIV5 (188-191)TI2 (44-47)S11 (174-187)TI3 (45-48)S2 (49-61)TI6 (134-137)O1 (104-106)TI5 (131-134)TII1 (129-132)3H1 (63-65)O2 (127-140)TI9 (165-168)3H2 (69-71)S8 (120-126)3H3 (82-84)TI'1 (72-75)S3 (77-81)S4 (90-92)TIV2 (92-95)TI4 (110-113)S5 (100-101)TI8 (150-153)S10 (154-157)S6 (106-110)S7 (114-117)TI7 (146-149)S12 (194-206)TVIII2 (172-175)S9 (138-146)AH1 (-5-15)Updating...
connected with : NaN
molecule tags Receptor
source organism Aplysia californica
publication title Structural Determinants in Phycotoxins and Achbp Conferring High Affinity Binding and Nicotinic Achr Antagonism.
pubmed doi rcsb
molecule keywords SOLUBLE ACETYLCHOLINE RECEPTOR
total genus 50
structure length 216
sequence length 216
chains with identical sequence B, C, E
ec nomenclature
pdb deposition date 2009-12-04

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02931 Neur_chan_LBD Neurotransmitter-gated ion-channel ligand binding domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.70.170.10 Mainly Beta Distorted Sandwich Acetylcholine Binding Protein; Chain: A, Neurotransmitter-gated ion-channel ligand-binding domain 2x00A00
4UM3S 5L4HA 3U8MA 4IL4A 3UU8A 4QH1A 4LMKA 5LXBA 5J0ZA 2PH9A 2BJ0A 3TLVA 4ILAA 4PIRA 4Z90A 4TNVA 2XNUA 2ZJVA 5HEJA 3SQ6A 3WTJA 3PMZA 5CFBA 4IREA 2BG9C 1UV6A 2BG9B 3WTMA 5HEOA 4DBMA 3RHWA 2XQ7A 3RQWA 3WTIA 2Y58A 4HFDA 2BG9E 2BYPA 3TLUA 3U8KA 3ZKRA 4B5DA 5KZUA 4TWHA 4NPPA 2ZJUA 2XZ5A 4AFGA 4UXUA 5J5FA 3ZDHA 4LMJA 4AFHA 2XYTA 3RIAA 4UM3A 2XQ8A 4HFEA 4XHEA 4AFTA 5AINA 3U8JA 5HEHA 3EHZA 2Y54A 4COFA 4EZ1A 4WV9A 2BYRA 2XQ6A 4TWDA 4X5TA 4ZR6A 3UU4A 3SIOA 2W8FA 4HFIA 4NZBA 4F8HA 4QH4A 5FJVA 3ZDGA 4QAAA 2YMDA 2WZYA 3SH1A 4FRRA 2QC1B 3SQ9A 5BW2A 3JAEA 2W8GA 2X00A 3T4MA 3WTOA 2PGZA 4ZZBA 2XNVA 2UZ6A 5JMEA 5AFMA 5AFHA 2XYSA 4Z91A 3RQUA 2WNCA 4LMLA 4BFQA 3U8LA 2XQ5A 4QH5A 4ILCA 3TLWA 4A97A 5BP0A 4TWFA 2XQAA 4ZJTA 4UM1A 4ILBA 2Y7YA 3UU6A 5LG3A 4ZRUA 3UQ7A 3EI0A 2BYSA 2VL0A 3WTKA 3P50A 2BYNA 4QACA 4TNWA 4ZK4A 3JADA 5J5IA 4UY2A 3RI5A 5SYOA 2YKSA 1UW6A 2XNTA 5HEGA 5BRXA 4ZK1A 3GUAA 2YN6A 5J5HA 2WN9A 5J5GA 4ZJSA 2YMEA 2Y56A 4BQTA 4QABA 4UM3P 3UU5A 5L4EA 5AFNA 2WNJA 3UUBA 2XQ4A 4A98A 2XQ3A 4HQPA 5IUXA 3TLSA 4HFHA 5KE4A 3U8NA 2YOEA 2BYQA 3WTLA 3WIPA 5L47A 2X00D 5CO5A 3UQ4A 5AFLA 1UX2A 3LSVA 2BR8A 3WTHA 4IL9A 3UU3A 3IGQA 4ZZCA 3RIFA 3PEOA 2BR7A 2Y57A 4ALXA 2XZ6A 3P4WA 2XQ9A 3EAMA 5HCMA 4HFBA 5AFJA 2BG9A 3C84A 4XK9A 5TVCA 5HEUA 3TLTA 5AFMB 3C79A 3JAFA 4HFCA 5HCJA 4D01A 2WNLA 5AFKA 3WTNA 1I9BA 2C9TA
chains in the Genus database with same CATH superfamily
4UM3S 5L4HA 3U8MA 4IL4A 3UU8A 4QH1A 4LMKA 5LXBA 5J0ZA 2PH9A 2BJ0A 3TLVA 4ILAA 4PIRA 4Z90A 4TNVA 2XNUA 2ZJVA 5HEJA 3SQ6A 3WTJA 3PMZA 5CFBA 4IREA 2BG9C 1UV6A 2BG9B 3WTMA 5HEOA 4DBMA 3RHWA 2XQ7A 3RQWA 3WTIA 2Y58A 4HFDA 2BG9E 2BYPA 3TLUA 3U8KA 3ZKRA 4B5DA 5KZUA 4TWHA 4NPPA 2ZJUA 2XZ5A 4AFGA 4UXUA 5J5FA 3ZDHA 4LMJA 4AFHA 2XYTA 3RIAA 4UM3A 2XQ8A 4HFEA 4XHEA 4AFTA 5AINA 3U8JA 5HEHA 3EHZA 2Y54A 4COFA 4EZ1A 4WV9A 2BYRA 2XQ6A 4TWDA 4X5TA 4ZR6A 3UU4A 3SIOA 2W8FA 4HFIA 4NZBA 4F8HA 4QH4A 5FJVA 3ZDGA 4QAAA 2YMDA 2WZYA 3SH1A 4FRRA 2QC1B 3SQ9A 5BW2A 3JAEA 2W8GA 2X00A 3T4MA 3WTOA 2PGZA 4ZZBA 2XNVA 2UZ6A 5JMEA 5AFMA 5AFHA 2XYSA 4Z91A 3RQUA 2WNCA 4LMLA 4BFQA 3U8LA 2XQ5A 4QH5A 4ILCA 3TLWA 4A97A 5BP0A 4TWFA 2XQAA 4ZJTA 4UM1A 4ILBA 2Y7YA 3UU6A 5LG3A 4ZRUA 3UQ7A 3EI0A 2BYSA 2VL0A 3WTKA 3P50A 2BYNA 4QACA 4TNWA 4ZK4A 3JADA 5J5IA 4UY2A 3RI5A 5SYOA 2YKSA 1UW6A 2XNTA 5HEGA 5BRXA 4ZK1A 3GUAA 2YN6A 5J5HA 2WN9A 5J5GA 4ZJSA 2YMEA 2Y56A 4BQTA 4QABA 4UM3P 3UU5A 5L4EA 5AFNA 2WNJA 3UUBA 2XQ4A 4A98A 2XQ3A 4HQPA 5IUXA 3TLSA 4HFHA 5KE4A 3U8NA 2YOEA 2BYQA 3WTLA 3WIPA 5L47A 2X00D 5CO5A 3UQ4A 5AFLA 1UX2A 3LSVA 2BR8A 3WTHA 4IL9A 3UU3A 3IGQA 4ZZCA 3RIFA 3PEOA 2BR7A 2Y57A 4ALXA 2XZ6A 3P4WA 2XQ9A 3EAMA 5HCMA 4HFBA 5AFJA 2BG9A 3C84A 4XK9A 5TVCA 5HEUA 3TLTA 5AFMB 3C79A 3JAFA 4HFCA 5HCJA 4D01A 2WNLA 5AFKA 3WTNA 1I9BA 2C9TA
chains in the Genus database with same CATH topology
4UM3S 5L4HA 3U8MA 4IL4A 3UU8A 4QH1A 4LMKA 5LXBA 5J0ZA 2PH9A 2BJ0A 3TLVA 4ILAA 4PIRA 4Z90A 4TNVA 2XNUA 2ZJVA 5HEJA 3SQ6A 3WTJA 3PMZA 5CFBA 4IREA 2BG9C 1UV6A 2BG9B 3WTMA 5HEOA 4DBMA 3RHWA 2XQ7A 3RQWA 3WTIA 2Y58A 4HFDA 2BG9E 2BYPA 3TLUA 3U8KA 3ZKRA 4B5DA 5KZUA 4TWHA 4NPPA 2ZJUA 2XZ5A 4AFGA 4UXUA 5J5FA 3ZDHA 4LMJA 4AFHA 2XYTA 3RIAA 4UM3A 2XQ8A 4HFEA 4XHEA 4AFTA 5AINA 3U8JA 5HEHA 3EHZA 2Y54A 4COFA 4EZ1A 4WV9A 2BYRA 2XQ6A 4TWDA 4X5TA 4ZR6A 3UU4A 3SIOA 2W8FA 4HFIA 4NZBA 4F8HA 4QH4A 5FJVA 3ZDGA 4QAAA 2YMDA 2WZYA 3SH1A 4FRRA 2QC1B 3SQ9A 5BW2A 3JAEA 2W8GA 2X00A 3T4MA 3WTOA 2PGZA 4ZZBA 2XNVA 2UZ6A 5JMEA 5AFMA 5AFHA 2XYSA 4Z91A 3RQUA 2WNCA 4LMLA 4BFQA 3U8LA 2XQ5A 4QH5A 4ILCA 3TLWA 4A97A 5BP0A 4TWFA 2XQAA 4ZJTA 4UM1A 4ILBA 2Y7YA 3UU6A 5LG3A 4ZRUA 3UQ7A 3EI0A 2BYSA 2VL0A 3WTKA 3P50A 2BYNA 4QACA 4TNWA 4ZK4A 3JADA 5J5IA 4UY2A 3RI5A 5SYOA 2YKSA 1UW6A 2XNTA 5HEGA 5BRXA 4ZK1A 3GUAA 2YN6A 5J5HA 2WN9A 5J5GA 4ZJSA 2YMEA 2Y56A 4BQTA 4QABA 4UM3P 3UU5A 5L4EA 5AFNA 2WNJA 3UUBA 2XQ4A 4A98A 2XQ3A 4HQPA 5IUXA 3TLSA 4HFHA 5KE4A 3U8NA 2YOEA 2BYQA 3WTLA 3WIPA 5L47A 2X00D 5CO5A 3UQ4A 5AFLA 1UX2A 3LSVA 2BR8A 3WTHA 4IL9A 3UU3A 3IGQA 4ZZCA 3RIFA 3PEOA 2BR7A 2Y57A 4ALXA 2XZ6A 3P4WA 2XQ9A 3EAMA 5HCMA 4HFBA 5AFJA 2BG9A 3C84A 4XK9A 5TVCA 5HEUA 3TLTA 5AFMB 3C79A 3JAFA 4HFCA 5HCJA 4D01A 2WNLA 5AFKA 3WTNA 1I9BA 2C9TA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4UM3 S;  5L4H A;  3U8M A;  4IL4 A;  3UU8 A;  4QH1 A;  4LMK A;  5LXB A;  5J0Z A;  2PH9 A;  2BJ0 A;  3TLV A;  4ILA A;  4PIR A;  4Z90 A;  4TNV A;  2XNU A;  2ZJV A;  5HEJ A;  3SQ6 A;  3WTJ A;  3PMZ A;  5CFB A;  4IRE A;  2BG9 C;  1UV6 A;  2BG9 B;  3WTM A;  5HEO A;  4DBM A;  3RHW A;  2XQ7 A;  3RQW A;  3WTI A;  2Y58 A;  4HFD A;  2BG9 E;  2BYP A;  3TLU A;  3U8K A;  3ZKR A;  4B5D A;  5KZU A;  4TWH A;  4NPP A;  2ZJU A;  2XZ5 A;  4AFG A;  4UXU A;  5J5F A;  3ZDH A;  4LMJ A;  4AFH A;  2XYT A;  3RIA A;  4UM3 A;  2XQ8 A;  4HFE A;  4XHE A;  4AFT A;  5AIN A;  3U8J A;  5HEH A;  3EHZ A;  2Y54 A;  4COF A;  4EZ1 A;  4WV9 A;  2BYR A;  2XQ6 A;  4TWD A;  4X5T A;  4ZR6 A;  3UU4 A;  3SIO A;  2W8F A;  4HFI A;  4NZB A;  4F8H A;  4QH4 A;  5FJV A;  3ZDG A;  4QAA A;  2YMD A;  2WZY A;  3SH1 A;  4FRR A;  2QC1 B;  3SQ9 A;  5BW2 A;  3JAE A;  2W8G A;  2X00 A;  3T4M A;  3WTO A;  2PGZ A;  4ZZB A;  2XNV A;  2UZ6 A;  5JME A;  5AFM A;  5AFH A;  2XYS A;  4Z91 A;  3RQU A;  2WNC A;  4LML A;  4BFQ A;  3U8L A;  2XQ5 A;  4QH5 A;  4ILC A;  3TLW A;  4A97 A;  5BP0 A;  4TWF A;  2XQA A;  4ZJT A;  4UM1 A;  4ILB A;  2Y7Y A;  3UU6 A;  5LG3 A;  4ZRU A;  3UQ7 A;  3EI0 A;  2BYS A;  2VL0 A;  3WTK A;  3P50 A;  2BYN A;  4QAC A;  4TNW A;  4ZK4 A;  3JAD A;  5J5I A;  4UY2 A;  3RI5 A;  5SYO A;  2YKS A;  1UW6 A;  2XNT A;  5HEG A;  5BRX A;  4ZK1 A;  3GUA A;  2YN6 A;  5J5H A;  2WN9 A;  5J5G A;  4ZJS A;  2YME A;  2Y56 A;  4BQT A;  4QAB A;  4UM3 P;  3UU5 A;  5L4E A;  5AFN A;  2WNJ A;  3UUB A;  2XQ4 A;  4A98 A;  2XQ3 A;  4HQP A;  5IUX A;  3TLS A;  4HFH A;  5KE4 A;  3U8N A;  2YOE A;  2BYQ A;  3WTL A;  3WIP A;  5L47 A;  2X00 D;  5CO5 A;  3UQ4 A;  5AFL A;  1UX2 A;  3LSV A;  2BR8 A;  3WTH A;  4IL9 A;  3UU3 A;  3IGQ A;  4ZZC A;  3RIF A;  3PEO A;  2BR7 A;  2Y57 A;  4ALX A;  2XZ6 A;  3P4W A;  2XQ9 A;  3EAM A;  5HCM A;  4HFB A;  5AFJ A;  2BG9 A;  3C84 A;  4XK9 A;  5TVC A;  5HEU A;  3TLT A;  5AFM B;  3C79 A;  3JAF A;  4HFC A;  5HCJ A;  4D01 A;  2WNL A;  5AFK A;  3WTN A;  1I9B A;  2C9T A; 
#chains in the Genus database with same CATH topology
 4UM3 S;  5L4H A;  3U8M A;  4IL4 A;  3UU8 A;  4QH1 A;  4LMK A;  5LXB A;  5J0Z A;  2PH9 A;  2BJ0 A;  3TLV A;  4ILA A;  4PIR A;  4Z90 A;  4TNV A;  2XNU A;  2ZJV A;  5HEJ A;  3SQ6 A;  3WTJ A;  3PMZ A;  5CFB A;  4IRE A;  2BG9 C;  1UV6 A;  2BG9 B;  3WTM A;  5HEO A;  4DBM A;  3RHW A;  2XQ7 A;  3RQW A;  3WTI A;  2Y58 A;  4HFD A;  2BG9 E;  2BYP A;  3TLU A;  3U8K A;  3ZKR A;  4B5D A;  5KZU A;  4TWH A;  4NPP A;  2ZJU A;  2XZ5 A;  4AFG A;  4UXU A;  5J5F A;  3ZDH A;  4LMJ A;  4AFH A;  2XYT A;  3RIA A;  4UM3 A;  2XQ8 A;  4HFE A;  4XHE A;  4AFT A;  5AIN A;  3U8J A;  5HEH A;  3EHZ A;  2Y54 A;  4COF A;  4EZ1 A;  4WV9 A;  2BYR A;  2XQ6 A;  4TWD A;  4X5T A;  4ZR6 A;  3UU4 A;  3SIO A;  2W8F A;  4HFI A;  4NZB A;  4F8H A;  4QH4 A;  5FJV A;  3ZDG A;  4QAA A;  2YMD A;  2WZY A;  3SH1 A;  4FRR A;  2QC1 B;  3SQ9 A;  5BW2 A;  3JAE A;  2W8G A;  2X00 A;  3T4M A;  3WTO A;  2PGZ A;  4ZZB A;  2XNV A;  2UZ6 A;  5JME A;  5AFM A;  5AFH A;  2XYS A;  4Z91 A;  3RQU A;  2WNC A;  4LML A;  4BFQ A;  3U8L A;  2XQ5 A;  4QH5 A;  4ILC A;  3TLW A;  4A97 A;  5BP0 A;  4TWF A;  2XQA A;  4ZJT A;  4UM1 A;  4ILB A;  2Y7Y A;  3UU6 A;  5LG3 A;  4ZRU A;  3UQ7 A;  3EI0 A;  2BYS A;  2VL0 A;  3WTK A;  3P50 A;  2BYN A;  4QAC A;  4TNW A;  4ZK4 A;  3JAD A;  5J5I A;  4UY2 A;  3RI5 A;  5SYO A;  2YKS A;  1UW6 A;  2XNT A;  5HEG A;  5BRX A;  4ZK1 A;  3GUA A;  2YN6 A;  5J5H A;  2WN9 A;  5J5G A;  4ZJS A;  2YME A;  2Y56 A;  4BQT A;  4QAB A;  4UM3 P;  3UU5 A;  5L4E A;  5AFN A;  2WNJ A;  3UUB A;  2XQ4 A;  4A98 A;  2XQ3 A;  4HQP A;  5IUX A;  3TLS A;  4HFH A;  5KE4 A;  3U8N A;  2YOE A;  2BYQ A;  3WTL A;  3WIP A;  5L47 A;  2X00 D;  5CO5 A;  3UQ4 A;  5AFL A;  1UX2 A;  3LSV A;  2BR8 A;  3WTH A;  4IL9 A;  3UU3 A;  3IGQ A;  4ZZC A;  3RIF A;  3PEO A;  2BR7 A;  2Y57 A;  4ALX A;  2XZ6 A;  3P4W A;  2XQ9 A;  3EAM A;  5HCM A;  4HFB A;  5AFJ A;  2BG9 A;  3C84 A;  4XK9 A;  5TVC A;  5HEU A;  3TLT A;  5AFM B;  3C79 A;  3JAF A;  4HFC A;  5HCJ A;  4D01 A;  2WNL A;  5AFK A;  3WTN A;  1I9B A;  2C9T A; 
#chains in the Genus database with same CATH homology
 4UM3 S;  5L4H A;  3U8M A;  4IL4 A;  3UU8 A;  4QH1 A;  4LMK A;  5LXB A;  5J0Z A;  2PH9 A;  2BJ0 A;  3TLV A;  4ILA A;  4PIR A;  4Z90 A;  4TNV A;  2XNU A;  2ZJV A;  5HEJ A;  3SQ6 A;  3WTJ A;  3PMZ A;  5CFB A;  4IRE A;  2BG9 C;  1UV6 A;  2BG9 B;  3WTM A;  5HEO A;  4DBM A;  3RHW A;  2XQ7 A;  3RQW A;  3WTI A;  2Y58 A;  4HFD A;  2BG9 E;  2BYP A;  3TLU A;  3U8K A;  3ZKR A;  4B5D A;  5KZU A;  4TWH A;  4NPP A;  2ZJU A;  2XZ5 A;  4AFG A;  4UXU A;  5J5F A;  3ZDH A;  4LMJ A;  4AFH A;  2XYT A;  3RIA A;  4UM3 A;  2XQ8 A;  4HFE A;  4XHE A;  4AFT A;  5AIN A;  3U8J A;  5HEH A;  3EHZ A;  2Y54 A;  4COF A;  4EZ1 A;  4WV9 A;  2BYR A;  2XQ6 A;  4TWD A;  4X5T A;  4ZR6 A;  3UU4 A;  3SIO A;  2W8F A;  4HFI A;  4NZB A;  4F8H A;  4QH4 A;  5FJV A;  3ZDG A;  4QAA A;  2YMD A;  2WZY A;  3SH1 A;  4FRR A;  2QC1 B;  3SQ9 A;  5BW2 A;  3JAE A;  2W8G A;  2X00 A;  3T4M A;  3WTO A;  2PGZ A;  4ZZB A;  2XNV A;  2UZ6 A;  5JME A;  5AFM A;  5AFH A;  2XYS A;  4Z91 A;  3RQU A;  2WNC A;  4LML A;  4BFQ A;  3U8L A;  2XQ5 A;  4QH5 A;  4ILC A;  3TLW A;  4A97 A;  5BP0 A;  4TWF A;  2XQA A;  4ZJT A;  4UM1 A;  4ILB A;  2Y7Y A;  3UU6 A;  5LG3 A;  4ZRU A;  3UQ7 A;  3EI0 A;  2BYS A;  2VL0 A;  3WTK A;  3P50 A;  2BYN A;  4QAC A;  4TNW A;  4ZK4 A;  3JAD A;  5J5I A;  4UY2 A;  3RI5 A;  5SYO A;  2YKS A;  1UW6 A;  2XNT A;  5HEG A;  5BRX A;  4ZK1 A;  3GUA A;  2YN6 A;  5J5H A;  2WN9 A;  5J5G A;  4ZJS A;  2YME A;  2Y56 A;  4BQT A;  4QAB A;  4UM3 P;  3UU5 A;  5L4E A;  5AFN A;  2WNJ A;  3UUB A;  2XQ4 A;  4A98 A;  2XQ3 A;  4HQP A;  5IUX A;  3TLS A;  4HFH A;  5KE4 A;  3U8N A;  2YOE A;  2BYQ A;  3WTL A;  3WIP A;  5L47 A;  2X00 D;  5CO5 A;  3UQ4 A;  5AFL A;  1UX2 A;  3LSV A;  2BR8 A;  3WTH A;  4IL9 A;  3UU3 A;  3IGQ A;  4ZZC A;  3RIF A;  3PEO A;  2BR7 A;  2Y57 A;  4ALX A;  2XZ6 A;  3P4W A;  2XQ9 A;  3EAM A;  5HCM A;  4HFB A;  5AFJ A;  2BG9 A;  3C84 A;  4XK9 A;  5TVC A;  5HEU A;  3TLT A;  5AFM B;  3C79 A;  3JAF A;  4HFC A;  5HCJ A;  4D01 A;  2WNL A;  5AFK A;  3WTN A;  1I9B A;  2C9T A; 
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similar chains in the Genus database (?% sequence similarity)
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