2YMDA

Crystal structure of a mutant binding protein (5htbp-achbp) in complex with serotonin (5-hydroxytryptamine)
Total Genus 48

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
48
sequence length
212
structure length
212
Chain Sequence
QANLMRLKSDLFNRSPMYPGPTKDDPLTVTLGFTLQDIVKVDSSTNEVDLVYWEQQRWKLNSLMWDPNEYGNITDFRTSAADIWTPDITAYESTRPVQVLSPQIAVVTHDGSVMFIPAQRLSFMCDPTGVDSEEGVTCALTFGSWVYSGFEIDLKTDTDQVDLSSYYASSKYEILSATQTRQVQHYSCCPEPYIDVNLVVKFRERRAGNGFF

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
3H2 (67-69)AH1 (2-13)S3 (75-79)TI'1 (70-73)TI1 (22-25)S1 (27-42)TI9 (148-151)S11 (172-186)TI11 (163-166)S2 (47-59)TI2 (42-45)O1 (125-138)TI3 (43-46)TIV2 (156-159)EMPTYS4 (88-90)S9 (136-144)S8 (118-124)TI4 (90-93)S5 (98-99)S6 (104-108)TI5 (108-111)S7 (112-115)TII1 (127-130)TI6 (129-132)S12 (189-204)TI7 (132-135)TI8 (144-147)S10 (152-155)TI12 (167-170)TVIII1 (170-173)3H1 (61-63)3H3 (80-82)Updating...
connected with : NaN
molecule tags Receptor
source organism Aplysia californica
publication title Structural Basis of Ligand Recognition in 5-Ht(3) Receptors.
pubmed doi rcsb
molecule keywords SOLUBLE ACETYLCHOLINE RECEPTOR
total genus 48
structure length 212
sequence length 212
chains with identical sequence B, C, D, E, F, G, H, I, J
ec nomenclature
pdb deposition date 2012-10-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02931 Neur_chan_LBD Neurotransmitter-gated ion-channel ligand binding domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.70.170.10 Mainly Beta Distorted Sandwich Acetylcholine Binding Protein; Chain: A, Neurotransmitter-gated ion-channel ligand-binding domain 2ymdA00
5SYOA 3SH1A 5BW2A 3JAFA 4HFCA 4IL4A 4ZR6A 3C79A 4BQTA 5HEHA 3WTLA 3TLSA 2XQ9A 4ZRUA 4LMJA 2YMEA 5AFHA 2XYSA 4NZBA 3UU3A 4TWFA 4QABA 5KZUA 2BG9B 3T4MA 4QH5A 5HEUA 2UZ6A 3PEOA 2BJ0A 1I9BA 3U8NA 3JAEA 2YKSA 4FRRA 2BYQA 4ILAA 3TLTA 5J5HA 2WN9A 2YN6A 4AFHA 2W8GA 2Y56A 4QAAA 4AFGA 4WV9A 5L4EA 4DBMA 4IL9A 5L4HA 4ZZBA 2XNUA 2Y54A 4NPPA 4TWHA 4HFHA 4UM3A 2VL0A 2BG9E 5HEGA 2BYNA 3ZDHA 3U8LA 2XQAA 4XK9A 3ZKRA 5J5IA 2BYRA 3UQ4A 2WNLA 5J5FA 3RIAA 4QH1A 4UM3S 4QH4A 4ZK4A 4ILCA 3SIOA 3WTJA 4ZJTA 2XQ8A 2WNJA 4PIRA 4A97A 3U8MA 1UX2A 2ZJVA 2BG9C 4F8HA 3UU5A 5HEJA 2XQ6A 4HQPA 3SQ9A 2PH9A 2XZ6A 2BR8A 2XQ5A 5AFNA 3RIFA 2PGZA 2QC1B 5IUXA 1UV6A 2C9TA 5KE4A 4COFA 2XYTA 2XNTA 4A98A 3WTNA 4QACA 3U8JA 2BYPA 4HFBA 2BG9A 5HEOA 3P4WA 4HFIA 2BYSA 3PMZA 3JADA 4X5TA 1UW6A 3TLVA 2WZYA 3UU4A 5AFMB 3SQ6A 2BR7A 2XQ4A 5CO5A 3WTMA 5LXBA 4Z91A 2Y58A 5J5GA 5AFKA 5CFBA 4EZ1A 3WTHA 4ZJSA 3RHWA 4LMLA 5HCMA 4BFQA 4TNWA 3UUBA 3WTOA 4ALXA 5BP0A 5TVCA 3IGQA 2X00A 4UM1A 4D01A 5L47A 5FJVA 3TLWA 4UXUA 3GUAA 5HCJA 2XNVA 2XQ3A 3EAMA 3RQWA 4ILBA 3RQUA 3WTKA 5BRXA 2YMDA 4B5DA 2WNCA 2Y7YA 4TNVA 5JMEA 5AINA 2ZJUA 4XHEA 3UQ7A 5J0ZA 3U8KA 3LSVA 4UM3P 4ZK1A 4ZZCA 4TWDA 2Y57A 3EI0A 5LG3A 2YOEA 3RI5A 3C84A 3TLUA 2XZ5A 3EHZA 4HFEA 5AFJA 2XQ7A 4UY2A 3UU6A 4HFDA 3WTIA 4Z90A 3P50A 3UU8A 4IREA 3WIPA 4AFTA 5AFMA 3ZDGA 5AFLA 2W8FA 2X00D 4LMKA
chains in the Genus database with same CATH superfamily
5SYOA 3SH1A 5BW2A 3JAFA 4HFCA 4IL4A 4ZR6A 3C79A 4BQTA 5HEHA 3WTLA 3TLSA 2XQ9A 4ZRUA 4LMJA 2YMEA 5AFHA 2XYSA 4NZBA 3UU3A 4TWFA 4QABA 5KZUA 2BG9B 3T4MA 4QH5A 5HEUA 2UZ6A 3PEOA 2BJ0A 1I9BA 3U8NA 3JAEA 2YKSA 4FRRA 2BYQA 4ILAA 3TLTA 5J5HA 2WN9A 2YN6A 4AFHA 2W8GA 2Y56A 4QAAA 4AFGA 4WV9A 5L4EA 4DBMA 4IL9A 5L4HA 4ZZBA 2XNUA 2Y54A 4NPPA 4TWHA 4HFHA 4UM3A 2VL0A 2BG9E 5HEGA 2BYNA 3ZDHA 3U8LA 2XQAA 4XK9A 3ZKRA 5J5IA 2BYRA 3UQ4A 2WNLA 5J5FA 3RIAA 4QH1A 4UM3S 4QH4A 4ZK4A 4ILCA 3SIOA 3WTJA 4ZJTA 2XQ8A 2WNJA 4PIRA 4A97A 3U8MA 1UX2A 2ZJVA 2BG9C 4F8HA 3UU5A 5HEJA 2XQ6A 4HQPA 3SQ9A 2PH9A 2XZ6A 2BR8A 2XQ5A 5AFNA 3RIFA 2PGZA 2QC1B 5IUXA 1UV6A 2C9TA 5KE4A 4COFA 2XYTA 2XNTA 4A98A 3WTNA 4QACA 3U8JA 2BYPA 4HFBA 2BG9A 5HEOA 3P4WA 4HFIA 2BYSA 3PMZA 3JADA 4X5TA 1UW6A 3TLVA 2WZYA 3UU4A 5AFMB 3SQ6A 2BR7A 2XQ4A 5CO5A 3WTMA 5LXBA 4Z91A 2Y58A 5J5GA 5AFKA 5CFBA 4EZ1A 3WTHA 4ZJSA 3RHWA 4LMLA 5HCMA 4BFQA 4TNWA 3UUBA 3WTOA 4ALXA 5BP0A 5TVCA 3IGQA 2X00A 4UM1A 4D01A 5L47A 5FJVA 3TLWA 4UXUA 3GUAA 5HCJA 2XNVA 2XQ3A 3EAMA 3RQWA 4ILBA 3RQUA 3WTKA 5BRXA 2YMDA 4B5DA 2WNCA 2Y7YA 4TNVA 5JMEA 5AINA 2ZJUA 4XHEA 3UQ7A 5J0ZA 3U8KA 3LSVA 4UM3P 4ZK1A 4ZZCA 4TWDA 2Y57A 3EI0A 5LG3A 2YOEA 3RI5A 3C84A 3TLUA 2XZ5A 3EHZA 4HFEA 5AFJA 2XQ7A 4UY2A 3UU6A 4HFDA 3WTIA 4Z90A 3P50A 3UU8A 4IREA 3WIPA 4AFTA 5AFMA 3ZDGA 5AFLA 2W8FA 2X00D 4LMKA
chains in the Genus database with same CATH topology
5SYOA 3SH1A 5BW2A 3JAFA 4HFCA 4IL4A 4ZR6A 3C79A 4BQTA 5HEHA 3WTLA 3TLSA 2XQ9A 4ZRUA 4LMJA 2YMEA 5AFHA 2XYSA 4NZBA 3UU3A 4TWFA 4QABA 5KZUA 2BG9B 3T4MA 4QH5A 5HEUA 2UZ6A 3PEOA 2BJ0A 1I9BA 3U8NA 3JAEA 2YKSA 4FRRA 2BYQA 4ILAA 3TLTA 5J5HA 2WN9A 2YN6A 4AFHA 2W8GA 2Y56A 4QAAA 4AFGA 4WV9A 5L4EA 4DBMA 4IL9A 5L4HA 4ZZBA 2XNUA 2Y54A 4NPPA 4TWHA 4HFHA 4UM3A 2VL0A 2BG9E 5HEGA 2BYNA 3ZDHA 3U8LA 2XQAA 4XK9A 3ZKRA 5J5IA 2BYRA 3UQ4A 2WNLA 5J5FA 3RIAA 4QH1A 4UM3S 4QH4A 4ZK4A 4ILCA 3SIOA 3WTJA 4ZJTA 2XQ8A 2WNJA 4PIRA 4A97A 3U8MA 1UX2A 2ZJVA 2BG9C 4F8HA 3UU5A 5HEJA 2XQ6A 4HQPA 3SQ9A 2PH9A 2XZ6A 2BR8A 2XQ5A 5AFNA 3RIFA 2PGZA 2QC1B 5IUXA 1UV6A 2C9TA 5KE4A 4COFA 2XYTA 2XNTA 4A98A 3WTNA 4QACA 3U8JA 2BYPA 4HFBA 2BG9A 5HEOA 3P4WA 4HFIA 2BYSA 3PMZA 3JADA 4X5TA 1UW6A 3TLVA 2WZYA 3UU4A 5AFMB 3SQ6A 2BR7A 2XQ4A 5CO5A 3WTMA 5LXBA 4Z91A 2Y58A 5J5GA 5AFKA 5CFBA 4EZ1A 3WTHA 4ZJSA 3RHWA 4LMLA 5HCMA 4BFQA 4TNWA 3UUBA 3WTOA 4ALXA 5BP0A 5TVCA 3IGQA 2X00A 4UM1A 4D01A 5L47A 5FJVA 3TLWA 4UXUA 3GUAA 5HCJA 2XNVA 2XQ3A 3EAMA 3RQWA 4ILBA 3RQUA 3WTKA 5BRXA 2YMDA 4B5DA 2WNCA 2Y7YA 4TNVA 5JMEA 5AINA 2ZJUA 4XHEA 3UQ7A 5J0ZA 3U8KA 3LSVA 4UM3P 4ZK1A 4ZZCA 4TWDA 2Y57A 3EI0A 5LG3A 2YOEA 3RI5A 3C84A 3TLUA 2XZ5A 3EHZA 4HFEA 5AFJA 2XQ7A 4UY2A 3UU6A 4HFDA 3WTIA 4Z90A 3P50A 3UU8A 4IREA 3WIPA 4AFTA 5AFMA 3ZDGA 5AFLA 2W8FA 2X00D 4LMKA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5SYO A;  3SH1 A;  5BW2 A;  3JAF A;  4HFC A;  4IL4 A;  4ZR6 A;  3C79 A;  4BQT A;  5HEH A;  3WTL A;  3TLS A;  2XQ9 A;  4ZRU A;  4LMJ A;  2YME A;  5AFH A;  2XYS A;  4NZB A;  3UU3 A;  4TWF A;  4QAB A;  5KZU A;  2BG9 B;  3T4M A;  4QH5 A;  5HEU A;  2UZ6 A;  3PEO A;  2BJ0 A;  1I9B A;  3U8N A;  3JAE A;  2YKS A;  4FRR A;  2BYQ A;  4ILA A;  3TLT A;  5J5H A;  2WN9 A;  2YN6 A;  4AFH A;  2W8G A;  2Y56 A;  4QAA A;  4AFG A;  4WV9 A;  5L4E A;  4DBM A;  4IL9 A;  5L4H A;  4ZZB A;  2XNU A;  2Y54 A;  4NPP A;  4TWH A;  4HFH A;  4UM3 A;  2VL0 A;  2BG9 E;  5HEG A;  2BYN A;  3ZDH A;  3U8L A;  2XQA A;  4XK9 A;  3ZKR A;  5J5I A;  2BYR A;  3UQ4 A;  2WNL A;  5J5F A;  3RIA A;  4QH1 A;  4UM3 S;  4QH4 A;  4ZK4 A;  4ILC A;  3SIO A;  3WTJ A;  4ZJT A;  2XQ8 A;  2WNJ A;  4PIR A;  4A97 A;  3U8M A;  1UX2 A;  2ZJV A;  2BG9 C;  4F8H A;  3UU5 A;  5HEJ A;  2XQ6 A;  4HQP A;  3SQ9 A;  2PH9 A;  2XZ6 A;  2BR8 A;  2XQ5 A;  5AFN A;  3RIF A;  2PGZ A;  2QC1 B;  5IUX A;  1UV6 A;  2C9T A;  5KE4 A;  4COF A;  2XYT A;  2XNT A;  4A98 A;  3WTN A;  4QAC A;  3U8J A;  2BYP A;  4HFB A;  2BG9 A;  5HEO A;  3P4W A;  4HFI A;  2BYS A;  3PMZ A;  3JAD A;  4X5T A;  1UW6 A;  3TLV A;  2WZY A;  3UU4 A;  5AFM B;  3SQ6 A;  2BR7 A;  2XQ4 A;  5CO5 A;  3WTM A;  5LXB A;  4Z91 A;  2Y58 A;  5J5G A;  5AFK A;  5CFB A;  4EZ1 A;  3WTH A;  4ZJS A;  3RHW A;  4LML A;  5HCM A;  4BFQ A;  4TNW A;  3UUB A;  3WTO A;  4ALX A;  5BP0 A;  5TVC A;  3IGQ A;  2X00 A;  4UM1 A;  4D01 A;  5L47 A;  5FJV A;  3TLW A;  4UXU A;  3GUA A;  5HCJ A;  2XNV A;  2XQ3 A;  3EAM A;  3RQW A;  4ILB A;  3RQU A;  3WTK A;  5BRX A;  2YMD A;  4B5D A;  2WNC A;  2Y7Y A;  4TNV A;  5JME A;  5AIN A;  2ZJU A;  4XHE A;  3UQ7 A;  5J0Z A;  3U8K A;  3LSV A;  4UM3 P;  4ZK1 A;  4ZZC A;  4TWD A;  2Y57 A;  3EI0 A;  5LG3 A;  2YOE A;  3RI5 A;  3C84 A;  3TLU A;  2XZ5 A;  3EHZ A;  4HFE A;  5AFJ A;  2XQ7 A;  4UY2 A;  3UU6 A;  4HFD A;  3WTI A;  4Z90 A;  3P50 A;  3UU8 A;  4IRE A;  3WIP A;  4AFT A;  5AFM A;  3ZDG A;  5AFL A;  2W8F A;  2X00 D;  4LMK A; 
#chains in the Genus database with same CATH topology
 5SYO A;  3SH1 A;  5BW2 A;  3JAF A;  4HFC A;  4IL4 A;  4ZR6 A;  3C79 A;  4BQT A;  5HEH A;  3WTL A;  3TLS A;  2XQ9 A;  4ZRU A;  4LMJ A;  2YME A;  5AFH A;  2XYS A;  4NZB A;  3UU3 A;  4TWF A;  4QAB A;  5KZU A;  2BG9 B;  3T4M A;  4QH5 A;  5HEU A;  2UZ6 A;  3PEO A;  2BJ0 A;  1I9B A;  3U8N A;  3JAE A;  2YKS A;  4FRR A;  2BYQ A;  4ILA A;  3TLT A;  5J5H A;  2WN9 A;  2YN6 A;  4AFH A;  2W8G A;  2Y56 A;  4QAA A;  4AFG A;  4WV9 A;  5L4E A;  4DBM A;  4IL9 A;  5L4H A;  4ZZB A;  2XNU A;  2Y54 A;  4NPP A;  4TWH A;  4HFH A;  4UM3 A;  2VL0 A;  2BG9 E;  5HEG A;  2BYN A;  3ZDH A;  3U8L A;  2XQA A;  4XK9 A;  3ZKR A;  5J5I A;  2BYR A;  3UQ4 A;  2WNL A;  5J5F A;  3RIA A;  4QH1 A;  4UM3 S;  4QH4 A;  4ZK4 A;  4ILC A;  3SIO A;  3WTJ A;  4ZJT A;  2XQ8 A;  2WNJ A;  4PIR A;  4A97 A;  3U8M A;  1UX2 A;  2ZJV A;  2BG9 C;  4F8H A;  3UU5 A;  5HEJ A;  2XQ6 A;  4HQP A;  3SQ9 A;  2PH9 A;  2XZ6 A;  2BR8 A;  2XQ5 A;  5AFN A;  3RIF A;  2PGZ A;  2QC1 B;  5IUX A;  1UV6 A;  2C9T A;  5KE4 A;  4COF A;  2XYT A;  2XNT A;  4A98 A;  3WTN A;  4QAC A;  3U8J A;  2BYP A;  4HFB A;  2BG9 A;  5HEO A;  3P4W A;  4HFI A;  2BYS A;  3PMZ A;  3JAD A;  4X5T A;  1UW6 A;  3TLV A;  2WZY A;  3UU4 A;  5AFM B;  3SQ6 A;  2BR7 A;  2XQ4 A;  5CO5 A;  3WTM A;  5LXB A;  4Z91 A;  2Y58 A;  5J5G A;  5AFK A;  5CFB A;  4EZ1 A;  3WTH A;  4ZJS A;  3RHW A;  4LML A;  5HCM A;  4BFQ A;  4TNW A;  3UUB A;  3WTO A;  4ALX A;  5BP0 A;  5TVC A;  3IGQ A;  2X00 A;  4UM1 A;  4D01 A;  5L47 A;  5FJV A;  3TLW A;  4UXU A;  3GUA A;  5HCJ A;  2XNV A;  2XQ3 A;  3EAM A;  3RQW A;  4ILB A;  3RQU A;  3WTK A;  5BRX A;  2YMD A;  4B5D A;  2WNC A;  2Y7Y A;  4TNV A;  5JME A;  5AIN A;  2ZJU A;  4XHE A;  3UQ7 A;  5J0Z A;  3U8K A;  3LSV A;  4UM3 P;  4ZK1 A;  4ZZC A;  4TWD A;  2Y57 A;  3EI0 A;  5LG3 A;  2YOE A;  3RI5 A;  3C84 A;  3TLU A;  2XZ5 A;  3EHZ A;  4HFE A;  5AFJ A;  2XQ7 A;  4UY2 A;  3UU6 A;  4HFD A;  3WTI A;  4Z90 A;  3P50 A;  3UU8 A;  4IRE A;  3WIP A;  4AFT A;  5AFM A;  3ZDG A;  5AFL A;  2W8F A;  2X00 D;  4LMK A; 
#chains in the Genus database with same CATH homology
 5SYO A;  3SH1 A;  5BW2 A;  3JAF A;  4HFC A;  4IL4 A;  4ZR6 A;  3C79 A;  4BQT A;  5HEH A;  3WTL A;  3TLS A;  2XQ9 A;  4ZRU A;  4LMJ A;  2YME A;  5AFH A;  2XYS A;  4NZB A;  3UU3 A;  4TWF A;  4QAB A;  5KZU A;  2BG9 B;  3T4M A;  4QH5 A;  5HEU A;  2UZ6 A;  3PEO A;  2BJ0 A;  1I9B A;  3U8N A;  3JAE A;  2YKS A;  4FRR A;  2BYQ A;  4ILA A;  3TLT A;  5J5H A;  2WN9 A;  2YN6 A;  4AFH A;  2W8G A;  2Y56 A;  4QAA A;  4AFG A;  4WV9 A;  5L4E A;  4DBM A;  4IL9 A;  5L4H A;  4ZZB A;  2XNU A;  2Y54 A;  4NPP A;  4TWH A;  4HFH A;  4UM3 A;  2VL0 A;  2BG9 E;  5HEG A;  2BYN A;  3ZDH A;  3U8L A;  2XQA A;  4XK9 A;  3ZKR A;  5J5I A;  2BYR A;  3UQ4 A;  2WNL A;  5J5F A;  3RIA A;  4QH1 A;  4UM3 S;  4QH4 A;  4ZK4 A;  4ILC A;  3SIO A;  3WTJ A;  4ZJT A;  2XQ8 A;  2WNJ A;  4PIR A;  4A97 A;  3U8M A;  1UX2 A;  2ZJV A;  2BG9 C;  4F8H A;  3UU5 A;  5HEJ A;  2XQ6 A;  4HQP A;  3SQ9 A;  2PH9 A;  2XZ6 A;  2BR8 A;  2XQ5 A;  5AFN A;  3RIF A;  2PGZ A;  2QC1 B;  5IUX A;  1UV6 A;  2C9T A;  5KE4 A;  4COF A;  2XYT A;  2XNT A;  4A98 A;  3WTN A;  4QAC A;  3U8J A;  2BYP A;  4HFB A;  2BG9 A;  5HEO A;  3P4W A;  4HFI A;  2BYS A;  3PMZ A;  3JAD A;  4X5T A;  1UW6 A;  3TLV A;  2WZY A;  3UU4 A;  5AFM B;  3SQ6 A;  2BR7 A;  2XQ4 A;  5CO5 A;  3WTM A;  5LXB A;  4Z91 A;  2Y58 A;  5J5G A;  5AFK A;  5CFB A;  4EZ1 A;  3WTH A;  4ZJS A;  3RHW A;  4LML A;  5HCM A;  4BFQ A;  4TNW A;  3UUB A;  3WTO A;  4ALX A;  5BP0 A;  5TVC A;  3IGQ A;  2X00 A;  4UM1 A;  4D01 A;  5L47 A;  5FJV A;  3TLW A;  4UXU A;  3GUA A;  5HCJ A;  2XNV A;  2XQ3 A;  3EAM A;  3RQW A;  4ILB A;  3RQU A;  3WTK A;  5BRX A;  2YMD A;  4B5D A;  2WNC A;  2Y7Y A;  4TNV A;  5JME A;  5AIN A;  2ZJU A;  4XHE A;  3UQ7 A;  5J0Z A;  3U8K A;  3LSV A;  4UM3 P;  4ZK1 A;  4ZZC A;  4TWD A;  2Y57 A;  3EI0 A;  5LG3 A;  2YOE A;  3RI5 A;  3C84 A;  3TLU A;  2XZ5 A;  3EHZ A;  4HFE A;  5AFJ A;  2XQ7 A;  4UY2 A;  3UU6 A;  4HFD A;  3WTI A;  4Z90 A;  3P50 A;  3UU8 A;  4IRE A;  3WIP A;  4AFT A;  5AFM A;  3ZDG A;  5AFL A;  2W8F A;  2X00 D;  4LMK A; 
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