2YMDA

Crystal structure of a mutant binding protein (5htbp-achbp) in complex with serotonin (5-hydroxytryptamine)
Total Genus 48

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
48
sequence length
212
structure length
212
Chain Sequence
QANLMRLKSDLFNRSPMYPGPTKDDPLTVTLGFTLQDIVKVDSSTNEVDLVYWEQQRWKLNSLMWDPNEYGNITDFRTSAADIWTPDITAYESTRPVQVLSPQIAVVTHDGSVMFIPAQRLSFMCDPTGVDSEEGVTCALTFGSWVYSGFEIDLKTDTDQVDLSSYYASSKYEILSATQTRQVQHYSCCPEPYIDVNLVVKFRERRAGNGFF

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
Updating...
connected with : NaN
molecule tags Receptor
source organism Aplysia californica
publication title Structural Basis of Ligand Recognition in 5-Ht(3) Receptors.
pubmed doi rcsb
molecule keywords SOLUBLE ACETYLCHOLINE RECEPTOR
total genus 48
structure length 212
sequence length 212
chains with identical sequence B, C, D, E, F, G, H, I, J
ec nomenclature
pdb deposition date 2012-10-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02931 Neur_chan_LBD Neurotransmitter-gated ion-channel ligand binding domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.70.170.10 Mainly Beta Distorted Sandwich Acetylcholine Binding Protein; Chain: A, Neurotransmitter-gated ion-channel ligand-binding domain 2ymdA00
3RHWA 4B5DA 5KZUA 2WNJA 4COFA 4X5TA 5J5IA 4ZZCA 2ZJVA 3SQ9A 5J5HA 2BYPA 5L47A 2YKSA 5AFLA 4HFCA 5CO5A 2XNTA 3IGQA 2XYTA 3GUAA 3RQWA 4QH5A 3WTKA 3RI5A 4TWDA 3P50A 3SIOA 3UUBA 3ZKRA 2BYNA 5AFMA 4QAAA 3ZDHA 2ZJUA 4ALXA 1UV6A 5J5GA 4AFHA 2XQAA 2BG9C 4TNWA 4ZJTA 2XZ6A 5J0ZA 3WTNA 4HFHA 2UZ6A 2BG9B 4FRRA 3U8KA 4F8HA 2C9TA 3WTLA 3TLSA 4ZK1A 5AFJA 3JAFA 2WNLA 2XYSA 5HCMA 3U8LA 4DBMA 2X00D 2BYRA 4UXUA 2Y54A 4QABA 2W8GA 2XQ4A 5AFKA 2Y58A 3WIPA 4ILAA 5HEHA 2BR7A 3SQ6A 2Y57A 4ILCA 3JADA 3T4MA 3U8MA 4ZRUA 5LG3A 4D01A 3UU5A 4LMJA 4TWFA 4HFBA 2YMEA 3UQ7A 5HEGA 2PGZA 1I9BA 3C79A 5L4EA 3PEOA 2BG9E 4ZZBA 4PIRA 2XQ6A 4A98A 3LSVA 2YMDA 4HFDA 4ILBA 2BYQA 1UX2A 5AFHA 5LXBA 3ZDGA 4TNVA 2WN9A 4EZ1A 4UM3S 3U8NA 2PH9A 4ZR6A 4WV9A 3TLTA 5BRXA 5AFNA 5KE4A 3RIFA 2YN6A 4UM3A 5AINA 3WTJA 5HCJA 4IL9A 2XQ5A 4LMKA 5HEUA 4UM1A 4QH4A 4AFTA 4Z90A 3P4WA 3TLUA 2WNCA 2XNUA 5L4HA 4UM3P 2QC1B 2X00A 3PMZA 3UQ4A 3WTHA 2XQ9A 4XK9A 4HQPA 4Z91A 5BW2A 3WTMA 5SYOA 4LMLA 2XQ7A 5HEOA 4HFIA 4BQTA 2BYSA 2Y7YA 4BFQA 2VL0A 4HFEA 4AFGA 4IL4A 5AFMB 4NZBA 2XQ8A 3JAEA 2Y56A 4IREA 5CFBA 3UU8A 5FJVA 2BR8A 2W8FA 2XNVA 4ZJSA 4QACA 4TWHA 3UU3A 2BG9A 3TLWA 3WTIA 4QH1A 5TVCA 5BP0A 3UU6A 2YOEA 2XQ3A 3WTOA 4UY2A 4A97A 3EHZA 4NPPA 3TLVA 3UU4A 3C84A 3SH1A 5JMEA 4ZK4A 5J5FA 4XHEA 3EAMA 3RQUA 3EI0A 1UW6A 2XZ5A 3U8JA 5HEJA 2WZYA 2BJ0A 3RIAA 5IUXA
chains in the Genus database with same CATH superfamily
3RHWA 4B5DA 5KZUA 2WNJA 4COFA 4X5TA 5J5IA 4ZZCA 2ZJVA 3SQ9A 5J5HA 2BYPA 5L47A 2YKSA 5AFLA 4HFCA 5CO5A 2XNTA 3IGQA 2XYTA 3GUAA 3RQWA 4QH5A 3WTKA 3RI5A 4TWDA 3P50A 3SIOA 3UUBA 3ZKRA 2BYNA 5AFMA 4QAAA 3ZDHA 2ZJUA 4ALXA 1UV6A 5J5GA 4AFHA 2XQAA 2BG9C 4TNWA 4ZJTA 2XZ6A 5J0ZA 3WTNA 4HFHA 2UZ6A 2BG9B 4FRRA 3U8KA 4F8HA 2C9TA 3WTLA 3TLSA 4ZK1A 5AFJA 3JAFA 2WNLA 2XYSA 5HCMA 3U8LA 4DBMA 2X00D 2BYRA 4UXUA 2Y54A 4QABA 2W8GA 2XQ4A 5AFKA 2Y58A 3WIPA 4ILAA 5HEHA 2BR7A 3SQ6A 2Y57A 4ILCA 3JADA 3T4MA 3U8MA 4ZRUA 5LG3A 4D01A 3UU5A 4LMJA 4TWFA 4HFBA 2YMEA 3UQ7A 5HEGA 2PGZA 1I9BA 3C79A 5L4EA 3PEOA 2BG9E 4ZZBA 4PIRA 2XQ6A 4A98A 3LSVA 2YMDA 4HFDA 4ILBA 2BYQA 1UX2A 5AFHA 5LXBA 3ZDGA 4TNVA 2WN9A 4EZ1A 4UM3S 3U8NA 2PH9A 4ZR6A 4WV9A 3TLTA 5BRXA 5AFNA 5KE4A 3RIFA 2YN6A 4UM3A 5AINA 3WTJA 5HCJA 4IL9A 2XQ5A 4LMKA 5HEUA 4UM1A 4QH4A 4AFTA 4Z90A 3P4WA 3TLUA 2WNCA 2XNUA 5L4HA 4UM3P 2QC1B 2X00A 3PMZA 3UQ4A 3WTHA 2XQ9A 4XK9A 4HQPA 4Z91A 5BW2A 3WTMA 5SYOA 4LMLA 2XQ7A 5HEOA 4HFIA 4BQTA 2BYSA 2Y7YA 4BFQA 2VL0A 4HFEA 4AFGA 4IL4A 5AFMB 4NZBA 2XQ8A 3JAEA 2Y56A 4IREA 5CFBA 3UU8A 5FJVA 2BR8A 2W8FA 2XNVA 4ZJSA 4QACA 4TWHA 3UU3A 2BG9A 3TLWA 3WTIA 4QH1A 5TVCA 5BP0A 3UU6A 2YOEA 2XQ3A 3WTOA 4UY2A 4A97A 3EHZA 4NPPA 3TLVA 3UU4A 3C84A 3SH1A 5JMEA 4ZK4A 5J5FA 4XHEA 3EAMA 3RQUA 3EI0A 1UW6A 2XZ5A 3U8JA 5HEJA 2WZYA 2BJ0A 3RIAA 5IUXA
chains in the Genus database with same CATH topology
3RHWA 4B5DA 5KZUA 2WNJA 4COFA 4X5TA 5J5IA 4ZZCA 2ZJVA 3SQ9A 5J5HA 2BYPA 5L47A 2YKSA 5AFLA 4HFCA 5CO5A 2XNTA 3IGQA 2XYTA 3GUAA 3RQWA 4QH5A 3WTKA 3RI5A 4TWDA 3P50A 3SIOA 3UUBA 3ZKRA 2BYNA 5AFMA 4QAAA 3ZDHA 2ZJUA 4ALXA 1UV6A 5J5GA 4AFHA 2XQAA 2BG9C 4TNWA 4ZJTA 2XZ6A 5J0ZA 3WTNA 4HFHA 2UZ6A 2BG9B 4FRRA 3U8KA 4F8HA 2C9TA 3WTLA 3TLSA 4ZK1A 5AFJA 3JAFA 2WNLA 2XYSA 5HCMA 3U8LA 4DBMA 2X00D 2BYRA 4UXUA 2Y54A 4QABA 2W8GA 2XQ4A 5AFKA 2Y58A 3WIPA 4ILAA 5HEHA 2BR7A 3SQ6A 2Y57A 4ILCA 3JADA 3T4MA 3U8MA 4ZRUA 5LG3A 4D01A 3UU5A 4LMJA 4TWFA 4HFBA 2YMEA 3UQ7A 5HEGA 2PGZA 1I9BA 3C79A 5L4EA 3PEOA 2BG9E 4ZZBA 4PIRA 2XQ6A 4A98A 3LSVA 2YMDA 4HFDA 4ILBA 2BYQA 1UX2A 5AFHA 5LXBA 3ZDGA 4TNVA 2WN9A 4EZ1A 4UM3S 3U8NA 2PH9A 4ZR6A 4WV9A 3TLTA 5BRXA 5AFNA 5KE4A 3RIFA 2YN6A 4UM3A 5AINA 3WTJA 5HCJA 4IL9A 2XQ5A 4LMKA 5HEUA 4UM1A 4QH4A 4AFTA 4Z90A 3P4WA 3TLUA 2WNCA 2XNUA 5L4HA 4UM3P 2QC1B 2X00A 3PMZA 3UQ4A 3WTHA 2XQ9A 4XK9A 4HQPA 4Z91A 5BW2A 3WTMA 5SYOA 4LMLA 2XQ7A 5HEOA 4HFIA 4BQTA 2BYSA 2Y7YA 4BFQA 2VL0A 4HFEA 4AFGA 4IL4A 5AFMB 4NZBA 2XQ8A 3JAEA 2Y56A 4IREA 5CFBA 3UU8A 5FJVA 2BR8A 2W8FA 2XNVA 4ZJSA 4QACA 4TWHA 3UU3A 2BG9A 3TLWA 3WTIA 4QH1A 5TVCA 5BP0A 3UU6A 2YOEA 2XQ3A 3WTOA 4UY2A 4A97A 3EHZA 4NPPA 3TLVA 3UU4A 3C84A 3SH1A 5JMEA 4ZK4A 5J5FA 4XHEA 3EAMA 3RQUA 3EI0A 1UW6A 2XZ5A 3U8JA 5HEJA 2WZYA 2BJ0A 3RIAA 5IUXA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3RHW A;  4B5D A;  5KZU A;  2WNJ A;  4COF A;  4X5T A;  5J5I A;  4ZZC A;  2ZJV A;  3SQ9 A;  5J5H A;  2BYP A;  5L47 A;  2YKS A;  5AFL A;  4HFC A;  5CO5 A;  2XNT A;  3IGQ A;  2XYT A;  3GUA A;  3RQW A;  4QH5 A;  3WTK A;  3RI5 A;  4TWD A;  3P50 A;  3SIO A;  3UUB A;  3ZKR A;  2BYN A;  5AFM A;  4QAA A;  3ZDH A;  2ZJU A;  4ALX A;  1UV6 A;  5J5G A;  4AFH A;  2XQA A;  2BG9 C;  4TNW A;  4ZJT A;  2XZ6 A;  5J0Z A;  3WTN A;  4HFH A;  2UZ6 A;  2BG9 B;  4FRR A;  3U8K A;  4F8H A;  2C9T A;  3WTL A;  3TLS A;  4ZK1 A;  5AFJ A;  3JAF A;  2WNL A;  2XYS A;  5HCM A;  3U8L A;  4DBM A;  2X00 D;  2BYR A;  4UXU A;  2Y54 A;  4QAB A;  2W8G A;  2XQ4 A;  5AFK A;  2Y58 A;  3WIP A;  4ILA A;  5HEH A;  2BR7 A;  3SQ6 A;  2Y57 A;  4ILC A;  3JAD A;  3T4M A;  3U8M A;  4ZRU A;  5LG3 A;  4D01 A;  3UU5 A;  4LMJ A;  4TWF A;  4HFB A;  2YME A;  3UQ7 A;  5HEG A;  2PGZ A;  1I9B A;  3C79 A;  5L4E A;  3PEO A;  2BG9 E;  4ZZB A;  4PIR A;  2XQ6 A;  4A98 A;  3LSV A;  2YMD A;  4HFD A;  4ILB A;  2BYQ A;  1UX2 A;  5AFH A;  5LXB A;  3ZDG A;  4TNV A;  2WN9 A;  4EZ1 A;  4UM3 S;  3U8N A;  2PH9 A;  4ZR6 A;  4WV9 A;  3TLT A;  5BRX A;  5AFN A;  5KE4 A;  3RIF A;  2YN6 A;  4UM3 A;  5AIN A;  3WTJ A;  5HCJ A;  4IL9 A;  2XQ5 A;  4LMK A;  5HEU A;  4UM1 A;  4QH4 A;  4AFT A;  4Z90 A;  3P4W A;  3TLU A;  2WNC A;  2XNU A;  5L4H A;  4UM3 P;  2QC1 B;  2X00 A;  3PMZ A;  3UQ4 A;  3WTH A;  2XQ9 A;  4XK9 A;  4HQP A;  4Z91 A;  5BW2 A;  3WTM A;  5SYO A;  4LML A;  2XQ7 A;  5HEO A;  4HFI A;  4BQT A;  2BYS A;  2Y7Y A;  4BFQ A;  2VL0 A;  4HFE A;  4AFG A;  4IL4 A;  5AFM B;  4NZB A;  2XQ8 A;  3JAE A;  2Y56 A;  4IRE A;  5CFB A;  3UU8 A;  5FJV A;  2BR8 A;  2W8F A;  2XNV A;  4ZJS A;  4QAC A;  4TWH A;  3UU3 A;  2BG9 A;  3TLW A;  3WTI A;  4QH1 A;  5TVC A;  5BP0 A;  3UU6 A;  2YOE A;  2XQ3 A;  3WTO A;  4UY2 A;  4A97 A;  3EHZ A;  4NPP A;  3TLV A;  3UU4 A;  3C84 A;  3SH1 A;  5JME A;  4ZK4 A;  5J5F A;  4XHE A;  3EAM A;  3RQU A;  3EI0 A;  1UW6 A;  2XZ5 A;  3U8J A;  5HEJ A;  2WZY A;  2BJ0 A;  3RIA A;  5IUX A; 
#chains in the Genus database with same CATH topology
 3RHW A;  4B5D A;  5KZU A;  2WNJ A;  4COF A;  4X5T A;  5J5I A;  4ZZC A;  2ZJV A;  3SQ9 A;  5J5H A;  2BYP A;  5L47 A;  2YKS A;  5AFL A;  4HFC A;  5CO5 A;  2XNT A;  3IGQ A;  2XYT A;  3GUA A;  3RQW A;  4QH5 A;  3WTK A;  3RI5 A;  4TWD A;  3P50 A;  3SIO A;  3UUB A;  3ZKR A;  2BYN A;  5AFM A;  4QAA A;  3ZDH A;  2ZJU A;  4ALX A;  1UV6 A;  5J5G A;  4AFH A;  2XQA A;  2BG9 C;  4TNW A;  4ZJT A;  2XZ6 A;  5J0Z A;  3WTN A;  4HFH A;  2UZ6 A;  2BG9 B;  4FRR A;  3U8K A;  4F8H A;  2C9T A;  3WTL A;  3TLS A;  4ZK1 A;  5AFJ A;  3JAF A;  2WNL A;  2XYS A;  5HCM A;  3U8L A;  4DBM A;  2X00 D;  2BYR A;  4UXU A;  2Y54 A;  4QAB A;  2W8G A;  2XQ4 A;  5AFK A;  2Y58 A;  3WIP A;  4ILA A;  5HEH A;  2BR7 A;  3SQ6 A;  2Y57 A;  4ILC A;  3JAD A;  3T4M A;  3U8M A;  4ZRU A;  5LG3 A;  4D01 A;  3UU5 A;  4LMJ A;  4TWF A;  4HFB A;  2YME A;  3UQ7 A;  5HEG A;  2PGZ A;  1I9B A;  3C79 A;  5L4E A;  3PEO A;  2BG9 E;  4ZZB A;  4PIR A;  2XQ6 A;  4A98 A;  3LSV A;  2YMD A;  4HFD A;  4ILB A;  2BYQ A;  1UX2 A;  5AFH A;  5LXB A;  3ZDG A;  4TNV A;  2WN9 A;  4EZ1 A;  4UM3 S;  3U8N A;  2PH9 A;  4ZR6 A;  4WV9 A;  3TLT A;  5BRX A;  5AFN A;  5KE4 A;  3RIF A;  2YN6 A;  4UM3 A;  5AIN A;  3WTJ A;  5HCJ A;  4IL9 A;  2XQ5 A;  4LMK A;  5HEU A;  4UM1 A;  4QH4 A;  4AFT A;  4Z90 A;  3P4W A;  3TLU A;  2WNC A;  2XNU A;  5L4H A;  4UM3 P;  2QC1 B;  2X00 A;  3PMZ A;  3UQ4 A;  3WTH A;  2XQ9 A;  4XK9 A;  4HQP A;  4Z91 A;  5BW2 A;  3WTM A;  5SYO A;  4LML A;  2XQ7 A;  5HEO A;  4HFI A;  4BQT A;  2BYS A;  2Y7Y A;  4BFQ A;  2VL0 A;  4HFE A;  4AFG A;  4IL4 A;  5AFM B;  4NZB A;  2XQ8 A;  3JAE A;  2Y56 A;  4IRE A;  5CFB A;  3UU8 A;  5FJV A;  2BR8 A;  2W8F A;  2XNV A;  4ZJS A;  4QAC A;  4TWH A;  3UU3 A;  2BG9 A;  3TLW A;  3WTI A;  4QH1 A;  5TVC A;  5BP0 A;  3UU6 A;  2YOE A;  2XQ3 A;  3WTO A;  4UY2 A;  4A97 A;  3EHZ A;  4NPP A;  3TLV A;  3UU4 A;  3C84 A;  3SH1 A;  5JME A;  4ZK4 A;  5J5F A;  4XHE A;  3EAM A;  3RQU A;  3EI0 A;  1UW6 A;  2XZ5 A;  3U8J A;  5HEJ A;  2WZY A;  2BJ0 A;  3RIA A;  5IUX A; 
#chains in the Genus database with same CATH homology
 3RHW A;  4B5D A;  5KZU A;  2WNJ A;  4COF A;  4X5T A;  5J5I A;  4ZZC A;  2ZJV A;  3SQ9 A;  5J5H A;  2BYP A;  5L47 A;  2YKS A;  5AFL A;  4HFC A;  5CO5 A;  2XNT A;  3IGQ A;  2XYT A;  3GUA A;  3RQW A;  4QH5 A;  3WTK A;  3RI5 A;  4TWD A;  3P50 A;  3SIO A;  3UUB A;  3ZKR A;  2BYN A;  5AFM A;  4QAA A;  3ZDH A;  2ZJU A;  4ALX A;  1UV6 A;  5J5G A;  4AFH A;  2XQA A;  2BG9 C;  4TNW A;  4ZJT A;  2XZ6 A;  5J0Z A;  3WTN A;  4HFH A;  2UZ6 A;  2BG9 B;  4FRR A;  3U8K A;  4F8H A;  2C9T A;  3WTL A;  3TLS A;  4ZK1 A;  5AFJ A;  3JAF A;  2WNL A;  2XYS A;  5HCM A;  3U8L A;  4DBM A;  2X00 D;  2BYR A;  4UXU A;  2Y54 A;  4QAB A;  2W8G A;  2XQ4 A;  5AFK A;  2Y58 A;  3WIP A;  4ILA A;  5HEH A;  2BR7 A;  3SQ6 A;  2Y57 A;  4ILC A;  3JAD A;  3T4M A;  3U8M A;  4ZRU A;  5LG3 A;  4D01 A;  3UU5 A;  4LMJ A;  4TWF A;  4HFB A;  2YME A;  3UQ7 A;  5HEG A;  2PGZ A;  1I9B A;  3C79 A;  5L4E A;  3PEO A;  2BG9 E;  4ZZB A;  4PIR A;  2XQ6 A;  4A98 A;  3LSV A;  2YMD A;  4HFD A;  4ILB A;  2BYQ A;  1UX2 A;  5AFH A;  5LXB A;  3ZDG A;  4TNV A;  2WN9 A;  4EZ1 A;  4UM3 S;  3U8N A;  2PH9 A;  4ZR6 A;  4WV9 A;  3TLT A;  5BRX A;  5AFN A;  5KE4 A;  3RIF A;  2YN6 A;  4UM3 A;  5AIN A;  3WTJ A;  5HCJ A;  4IL9 A;  2XQ5 A;  4LMK A;  5HEU A;  4UM1 A;  4QH4 A;  4AFT A;  4Z90 A;  3P4W A;  3TLU A;  2WNC A;  2XNU A;  5L4H A;  4UM3 P;  2QC1 B;  2X00 A;  3PMZ A;  3UQ4 A;  3WTH A;  2XQ9 A;  4XK9 A;  4HQP A;  4Z91 A;  5BW2 A;  3WTM A;  5SYO A;  4LML A;  2XQ7 A;  5HEO A;  4HFI A;  4BQT A;  2BYS A;  2Y7Y A;  4BFQ A;  2VL0 A;  4HFE A;  4AFG A;  4IL4 A;  5AFM B;  4NZB A;  2XQ8 A;  3JAE A;  2Y56 A;  4IRE A;  5CFB A;  3UU8 A;  5FJV A;  2BR8 A;  2W8F A;  2XNV A;  4ZJS A;  4QAC A;  4TWH A;  3UU3 A;  2BG9 A;  3TLW A;  3WTI A;  4QH1 A;  5TVC A;  5BP0 A;  3UU6 A;  2YOE A;  2XQ3 A;  3WTO A;  4UY2 A;  4A97 A;  3EHZ A;  4NPP A;  3TLV A;  3UU4 A;  3C84 A;  3SH1 A;  5JME A;  4ZK4 A;  5J5F A;  4XHE A;  3EAM A;  3RQU A;  3EI0 A;  1UW6 A;  2XZ5 A;  3U8J A;  5HEJ A;  2WZY A;  2BJ0 A;  3RIA A;  5IUX A; 
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