3PEOA

Crystal structure of acetylcholine binding protein complexed with metocurine
Total Genus 46

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
46
sequence length
207
structure length
203
Chain Sequence
SQANLMRLKSDLFNYPGPTKDDPLTVTLGFTLQDIVKADSSTNEVDLVYYEQQRWKLNSLMWDPNEYGNITDFRTSAADIWTPDITAYSSTRPVQVLSPQIAVVTHDGSVMFIPAQRLSFMCDPTGVDSEEGATCAVKFGSWVYSGFEIDLKTDTDQVDLSSYYASSKYEILSATQTRQVQHYSCCPEPYIDVNLVVKFRERR

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYTI1 (24-27)TI9 (146-149)S2 (49-61)TI10 (150-153)TIV1 (25-28)S1 (29-44)S11 (174-188)S8 (120-126)S4 (90-92)TI2 (44-47)S7 (114-117)TI6 (110-113)3H1 (63-65)S6 (106-110)TI4 (68-71)TI'1 (72-75)TI5 (69-72)TIV2 (70-73)S3 (77-81)S5 (100-101)3H2 (82-84)TIV3 (92-95)TI8 (134-137)O1 (127-140)TII1 (129-132)S12 (191-206)TI7 (131-134)S9 (138-146)TIV5 (188-191)S10 (154-157)TIV4 (158-161)TI13 (169-172)TI12 (165-168)TVIII1 (172-175)TI3 (45-48)AH1 (2-15)Updating...
connected with : NaN
molecule tags Choline-binding protein
source organism Aplysia californica
publication title The curare alkaloids: analyzing the poses of complexes with the acetylcholine binding protein in relation to structure and binding energetics
rcsb
molecule keywords Soluble acetylcholine receptor
total genus 46
structure length 203
sequence length 207
chains with identical sequence B, C, D, E, F, G, H, I, J
ec nomenclature
pdb deposition date 2010-10-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02931 Neur_chan_LBD Neurotransmitter-gated ion-channel ligand binding domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.70.170.10 Mainly Beta Distorted Sandwich Acetylcholine Binding Protein; Chain: A, Neurotransmitter-gated ion-channel ligand-binding domain 3peoA00
3SQ6A 4QH5A 2XQ8A 2BG9A 5LXBA 4TNVA 3RIFA 4UM3P 5HCMA 2BG9B 4BQTA 4XK9A 3SH1A 4AFGA 4QH1A 5KE4A 3UU3A 3WTJA 5J5HA 5AFNA 3UQ7A 5BRXA 4UY2A 4Z91A 5J5FA 4ZR6A 3WTOA 5J0ZA 2BYPA 5HEJA 4HFBA 5AFMB 4HFEA 3TLVA 4X5TA 2BG9E 2XYSA 3U8MA 4EZ1A 5CFBA 3TLWA 3U8LA 2XNVA 3LSVA 3WTNA 2BG9C 4HQPA 3PEOA 5BW2A 4Z90A 4A98A 2YMEA 4ILAA 1UX2A 3TLSA 2W8GA 4WV9A 5AFKA 2XQ5A 3EI0A 4HFIA 2Y58A 2YN6A 5FJVA 3SIOA 5BP0A 2Y56A 4ZZBA 4TNWA 2UZ6A 1I9BA 2PGZA 2QC1B 2W8FA 4AFTA 4ALXA 4ZJSA 2ZJUA 4ZRUA 5J5IA 3WTKA 4XHEA 2YOEA 5HEGA 4BFQA 3JAEA 2XQ3A 4IL9A 3JAFA 5AFJA 4AFHA 2BR7A 4ZZCA 5HEUA 4ZK4A 3ZDGA 2YMDA 2BYSA 2BYQA 3P4WA 2BYRA 5HEHA 2X00D 3C79A 3ZDHA 5SYOA 2WN9A 3UU5A 3UU8A 3WTLA 4TWDA 2XZ6A 2XYTA 1UW6A 3WTIA 4NZBA 4UM3A 3WIPA 3RQUA 2BYNA 5HEOA 2WZYA 2Y54A 4IREA 5J5GA 5LG3A 3UQ4A 3U8JA 5IUXA 2XQ4A 3PMZA 5TVCA 3WTMA 2BJ0A 2XZ5A 2WNLA 3TLTA 4ILBA 3UU6A 2WNCA 4HFHA 5HCJA 3C84A 4QAAA 3UUBA 3EHZA 3IGQA 4UM1A 2XNUA 4PIRA 4A97A 3SQ9A 3RIAA 2C9TA 4D01A 2Y7YA 4UXUA 1UV6A 3RQWA 4LMKA 2XNTA 4QH4A 3RHWA 2ZJVA 5AINA 4HFDA 3P50A 4QABA 5JMEA 5L4HA 3JADA 2XQ7A 4NPPA 4ZK1A 4IL4A 3WTHA 2BR8A 5AFLA 5L4EA 3UU4A 4TWFA 4LMJA 4ZJTA 2Y57A 2YKSA 4QACA 3RI5A 3T4MA 5AFMA 4UM3S 2WNJA 4ILCA 3U8KA 5L47A 5KZUA 4TWHA 2VL0A 5CO5A 3ZKRA 2XQAA 4DBMA 5AFHA 3GUAA 3EAMA 3U8NA 2XQ9A 4B5DA 4COFA 2XQ6A 4FRRA 2X00A 4LMLA 3TLUA 4F8HA 4HFCA 2PH9A
chains in the Genus database with same CATH superfamily
3SQ6A 4QH5A 2XQ8A 2BG9A 5LXBA 4TNVA 3RIFA 4UM3P 5HCMA 2BG9B 4BQTA 4XK9A 3SH1A 4AFGA 4QH1A 5KE4A 3UU3A 3WTJA 5J5HA 5AFNA 3UQ7A 5BRXA 4UY2A 4Z91A 5J5FA 4ZR6A 3WTOA 5J0ZA 2BYPA 5HEJA 4HFBA 5AFMB 4HFEA 3TLVA 4X5TA 2BG9E 2XYSA 3U8MA 4EZ1A 5CFBA 3TLWA 3U8LA 2XNVA 3LSVA 3WTNA 2BG9C 4HQPA 3PEOA 5BW2A 4Z90A 4A98A 2YMEA 4ILAA 1UX2A 3TLSA 2W8GA 4WV9A 5AFKA 2XQ5A 3EI0A 4HFIA 2Y58A 2YN6A 5FJVA 3SIOA 5BP0A 2Y56A 4ZZBA 4TNWA 2UZ6A 1I9BA 2PGZA 2QC1B 2W8FA 4AFTA 4ALXA 4ZJSA 2ZJUA 4ZRUA 5J5IA 3WTKA 4XHEA 2YOEA 5HEGA 4BFQA 3JAEA 2XQ3A 4IL9A 3JAFA 5AFJA 4AFHA 2BR7A 4ZZCA 5HEUA 4ZK4A 3ZDGA 2YMDA 2BYSA 2BYQA 3P4WA 2BYRA 5HEHA 2X00D 3C79A 3ZDHA 5SYOA 2WN9A 3UU5A 3UU8A 3WTLA 4TWDA 2XZ6A 2XYTA 1UW6A 3WTIA 4NZBA 4UM3A 3WIPA 3RQUA 2BYNA 5HEOA 2WZYA 2Y54A 4IREA 5J5GA 5LG3A 3UQ4A 3U8JA 5IUXA 2XQ4A 3PMZA 5TVCA 3WTMA 2BJ0A 2XZ5A 2WNLA 3TLTA 4ILBA 3UU6A 2WNCA 4HFHA 5HCJA 3C84A 4QAAA 3UUBA 3EHZA 3IGQA 4UM1A 2XNUA 4PIRA 4A97A 3SQ9A 3RIAA 2C9TA 4D01A 2Y7YA 4UXUA 1UV6A 3RQWA 4LMKA 2XNTA 4QH4A 3RHWA 2ZJVA 5AINA 4HFDA 3P50A 4QABA 5JMEA 5L4HA 3JADA 2XQ7A 4NPPA 4ZK1A 4IL4A 3WTHA 2BR8A 5AFLA 5L4EA 3UU4A 4TWFA 4LMJA 4ZJTA 2Y57A 2YKSA 4QACA 3RI5A 3T4MA 5AFMA 4UM3S 2WNJA 4ILCA 3U8KA 5L47A 5KZUA 4TWHA 2VL0A 5CO5A 3ZKRA 2XQAA 4DBMA 5AFHA 3GUAA 3EAMA 3U8NA 2XQ9A 4B5DA 4COFA 2XQ6A 4FRRA 2X00A 4LMLA 3TLUA 4F8HA 4HFCA 2PH9A
chains in the Genus database with same CATH topology
3SQ6A 4QH5A 2XQ8A 2BG9A 5LXBA 4TNVA 3RIFA 4UM3P 5HCMA 2BG9B 4BQTA 4XK9A 3SH1A 4AFGA 4QH1A 5KE4A 3UU3A 3WTJA 5J5HA 5AFNA 3UQ7A 5BRXA 4UY2A 4Z91A 5J5FA 4ZR6A 3WTOA 5J0ZA 2BYPA 5HEJA 4HFBA 5AFMB 4HFEA 3TLVA 4X5TA 2BG9E 2XYSA 3U8MA 4EZ1A 5CFBA 3TLWA 3U8LA 2XNVA 3LSVA 3WTNA 2BG9C 4HQPA 3PEOA 5BW2A 4Z90A 4A98A 2YMEA 4ILAA 1UX2A 3TLSA 2W8GA 4WV9A 5AFKA 2XQ5A 3EI0A 4HFIA 2Y58A 2YN6A 5FJVA 3SIOA 5BP0A 2Y56A 4ZZBA 4TNWA 2UZ6A 1I9BA 2PGZA 2QC1B 2W8FA 4AFTA 4ALXA 4ZJSA 2ZJUA 4ZRUA 5J5IA 3WTKA 4XHEA 2YOEA 5HEGA 4BFQA 3JAEA 2XQ3A 4IL9A 3JAFA 5AFJA 4AFHA 2BR7A 4ZZCA 5HEUA 4ZK4A 3ZDGA 2YMDA 2BYSA 2BYQA 3P4WA 2BYRA 5HEHA 2X00D 3C79A 3ZDHA 5SYOA 2WN9A 3UU5A 3UU8A 3WTLA 4TWDA 2XZ6A 2XYTA 1UW6A 3WTIA 4NZBA 4UM3A 3WIPA 3RQUA 2BYNA 5HEOA 2WZYA 2Y54A 4IREA 5J5GA 5LG3A 3UQ4A 3U8JA 5IUXA 2XQ4A 3PMZA 5TVCA 3WTMA 2BJ0A 2XZ5A 2WNLA 3TLTA 4ILBA 3UU6A 2WNCA 4HFHA 5HCJA 3C84A 4QAAA 3UUBA 3EHZA 3IGQA 4UM1A 2XNUA 4PIRA 4A97A 3SQ9A 3RIAA 2C9TA 4D01A 2Y7YA 4UXUA 1UV6A 3RQWA 4LMKA 2XNTA 4QH4A 3RHWA 2ZJVA 5AINA 4HFDA 3P50A 4QABA 5JMEA 5L4HA 3JADA 2XQ7A 4NPPA 4ZK1A 4IL4A 3WTHA 2BR8A 5AFLA 5L4EA 3UU4A 4TWFA 4LMJA 4ZJTA 2Y57A 2YKSA 4QACA 3RI5A 3T4MA 5AFMA 4UM3S 2WNJA 4ILCA 3U8KA 5L47A 5KZUA 4TWHA 2VL0A 5CO5A 3ZKRA 2XQAA 4DBMA 5AFHA 3GUAA 3EAMA 3U8NA 2XQ9A 4B5DA 4COFA 2XQ6A 4FRRA 2X00A 4LMLA 3TLUA 4F8HA 4HFCA 2PH9A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3SQ6 A;  4QH5 A;  2XQ8 A;  2BG9 A;  5LXB A;  4TNV A;  3RIF A;  4UM3 P;  5HCM A;  2BG9 B;  4BQT A;  4XK9 A;  3SH1 A;  4AFG A;  4QH1 A;  5KE4 A;  3UU3 A;  3WTJ A;  5J5H A;  5AFN A;  3UQ7 A;  5BRX A;  4UY2 A;  4Z91 A;  5J5F A;  4ZR6 A;  3WTO A;  5J0Z A;  2BYP A;  5HEJ A;  4HFB A;  5AFM B;  4HFE A;  3TLV A;  4X5T A;  2BG9 E;  2XYS A;  3U8M A;  4EZ1 A;  5CFB A;  3TLW A;  3U8L A;  2XNV A;  3LSV A;  3WTN A;  2BG9 C;  4HQP A;  3PEO A;  5BW2 A;  4Z90 A;  4A98 A;  2YME A;  4ILA A;  1UX2 A;  3TLS A;  2W8G A;  4WV9 A;  5AFK A;  2XQ5 A;  3EI0 A;  4HFI A;  2Y58 A;  2YN6 A;  5FJV A;  3SIO A;  5BP0 A;  2Y56 A;  4ZZB A;  4TNW A;  2UZ6 A;  1I9B A;  2PGZ A;  2QC1 B;  2W8F A;  4AFT A;  4ALX A;  4ZJS A;  2ZJU A;  4ZRU A;  5J5I A;  3WTK A;  4XHE A;  2YOE A;  5HEG A;  4BFQ A;  3JAE A;  2XQ3 A;  4IL9 A;  3JAF A;  5AFJ A;  4AFH A;  2BR7 A;  4ZZC A;  5HEU A;  4ZK4 A;  3ZDG A;  2YMD A;  2BYS A;  2BYQ A;  3P4W A;  2BYR A;  5HEH A;  2X00 D;  3C79 A;  3ZDH A;  5SYO A;  2WN9 A;  3UU5 A;  3UU8 A;  3WTL A;  4TWD A;  2XZ6 A;  2XYT A;  1UW6 A;  3WTI A;  4NZB A;  4UM3 A;  3WIP A;  3RQU A;  2BYN A;  5HEO A;  2WZY A;  2Y54 A;  4IRE A;  5J5G A;  5LG3 A;  3UQ4 A;  3U8J A;  5IUX A;  2XQ4 A;  3PMZ A;  5TVC A;  3WTM A;  2BJ0 A;  2XZ5 A;  2WNL A;  3TLT A;  4ILB A;  3UU6 A;  2WNC A;  4HFH A;  5HCJ A;  3C84 A;  4QAA A;  3UUB A;  3EHZ A;  3IGQ A;  4UM1 A;  2XNU A;  4PIR A;  4A97 A;  3SQ9 A;  3RIA A;  2C9T A;  4D01 A;  2Y7Y A;  4UXU A;  1UV6 A;  3RQW A;  4LMK A;  2XNT A;  4QH4 A;  3RHW A;  2ZJV A;  5AIN A;  4HFD A;  3P50 A;  4QAB A;  5JME A;  5L4H A;  3JAD A;  2XQ7 A;  4NPP A;  4ZK1 A;  4IL4 A;  3WTH A;  2BR8 A;  5AFL A;  5L4E A;  3UU4 A;  4TWF A;  4LMJ A;  4ZJT A;  2Y57 A;  2YKS A;  4QAC A;  3RI5 A;  3T4M A;  5AFM A;  4UM3 S;  2WNJ A;  4ILC A;  3U8K A;  5L47 A;  5KZU A;  4TWH A;  2VL0 A;  5CO5 A;  3ZKR A;  2XQA A;  4DBM A;  5AFH A;  3GUA A;  3EAM A;  3U8N A;  2XQ9 A;  4B5D A;  4COF A;  2XQ6 A;  4FRR A;  2X00 A;  4LML A;  3TLU A;  4F8H A;  4HFC A;  2PH9 A; 
#chains in the Genus database with same CATH topology
 3SQ6 A;  4QH5 A;  2XQ8 A;  2BG9 A;  5LXB A;  4TNV A;  3RIF A;  4UM3 P;  5HCM A;  2BG9 B;  4BQT A;  4XK9 A;  3SH1 A;  4AFG A;  4QH1 A;  5KE4 A;  3UU3 A;  3WTJ A;  5J5H A;  5AFN A;  3UQ7 A;  5BRX A;  4UY2 A;  4Z91 A;  5J5F A;  4ZR6 A;  3WTO A;  5J0Z A;  2BYP A;  5HEJ A;  4HFB A;  5AFM B;  4HFE A;  3TLV A;  4X5T A;  2BG9 E;  2XYS A;  3U8M A;  4EZ1 A;  5CFB A;  3TLW A;  3U8L A;  2XNV A;  3LSV A;  3WTN A;  2BG9 C;  4HQP A;  3PEO A;  5BW2 A;  4Z90 A;  4A98 A;  2YME A;  4ILA A;  1UX2 A;  3TLS A;  2W8G A;  4WV9 A;  5AFK A;  2XQ5 A;  3EI0 A;  4HFI A;  2Y58 A;  2YN6 A;  5FJV A;  3SIO A;  5BP0 A;  2Y56 A;  4ZZB A;  4TNW A;  2UZ6 A;  1I9B A;  2PGZ A;  2QC1 B;  2W8F A;  4AFT A;  4ALX A;  4ZJS A;  2ZJU A;  4ZRU A;  5J5I A;  3WTK A;  4XHE A;  2YOE A;  5HEG A;  4BFQ A;  3JAE A;  2XQ3 A;  4IL9 A;  3JAF A;  5AFJ A;  4AFH A;  2BR7 A;  4ZZC A;  5HEU A;  4ZK4 A;  3ZDG A;  2YMD A;  2BYS A;  2BYQ A;  3P4W A;  2BYR A;  5HEH A;  2X00 D;  3C79 A;  3ZDH A;  5SYO A;  2WN9 A;  3UU5 A;  3UU8 A;  3WTL A;  4TWD A;  2XZ6 A;  2XYT A;  1UW6 A;  3WTI A;  4NZB A;  4UM3 A;  3WIP A;  3RQU A;  2BYN A;  5HEO A;  2WZY A;  2Y54 A;  4IRE A;  5J5G A;  5LG3 A;  3UQ4 A;  3U8J A;  5IUX A;  2XQ4 A;  3PMZ A;  5TVC A;  3WTM A;  2BJ0 A;  2XZ5 A;  2WNL A;  3TLT A;  4ILB A;  3UU6 A;  2WNC A;  4HFH A;  5HCJ A;  3C84 A;  4QAA A;  3UUB A;  3EHZ A;  3IGQ A;  4UM1 A;  2XNU A;  4PIR A;  4A97 A;  3SQ9 A;  3RIA A;  2C9T A;  4D01 A;  2Y7Y A;  4UXU A;  1UV6 A;  3RQW A;  4LMK A;  2XNT A;  4QH4 A;  3RHW A;  2ZJV A;  5AIN A;  4HFD A;  3P50 A;  4QAB A;  5JME A;  5L4H A;  3JAD A;  2XQ7 A;  4NPP A;  4ZK1 A;  4IL4 A;  3WTH A;  2BR8 A;  5AFL A;  5L4E A;  3UU4 A;  4TWF A;  4LMJ A;  4ZJT A;  2Y57 A;  2YKS A;  4QAC A;  3RI5 A;  3T4M A;  5AFM A;  4UM3 S;  2WNJ A;  4ILC A;  3U8K A;  5L47 A;  5KZU A;  4TWH A;  2VL0 A;  5CO5 A;  3ZKR A;  2XQA A;  4DBM A;  5AFH A;  3GUA A;  3EAM A;  3U8N A;  2XQ9 A;  4B5D A;  4COF A;  2XQ6 A;  4FRR A;  2X00 A;  4LML A;  3TLU A;  4F8H A;  4HFC A;  2PH9 A; 
#chains in the Genus database with same CATH homology
 3SQ6 A;  4QH5 A;  2XQ8 A;  2BG9 A;  5LXB A;  4TNV A;  3RIF A;  4UM3 P;  5HCM A;  2BG9 B;  4BQT A;  4XK9 A;  3SH1 A;  4AFG A;  4QH1 A;  5KE4 A;  3UU3 A;  3WTJ A;  5J5H A;  5AFN A;  3UQ7 A;  5BRX A;  4UY2 A;  4Z91 A;  5J5F A;  4ZR6 A;  3WTO A;  5J0Z A;  2BYP A;  5HEJ A;  4HFB A;  5AFM B;  4HFE A;  3TLV A;  4X5T A;  2BG9 E;  2XYS A;  3U8M A;  4EZ1 A;  5CFB A;  3TLW A;  3U8L A;  2XNV A;  3LSV A;  3WTN A;  2BG9 C;  4HQP A;  3PEO A;  5BW2 A;  4Z90 A;  4A98 A;  2YME A;  4ILA A;  1UX2 A;  3TLS A;  2W8G A;  4WV9 A;  5AFK A;  2XQ5 A;  3EI0 A;  4HFI A;  2Y58 A;  2YN6 A;  5FJV A;  3SIO A;  5BP0 A;  2Y56 A;  4ZZB A;  4TNW A;  2UZ6 A;  1I9B A;  2PGZ A;  2QC1 B;  2W8F A;  4AFT A;  4ALX A;  4ZJS A;  2ZJU A;  4ZRU A;  5J5I A;  3WTK A;  4XHE A;  2YOE A;  5HEG A;  4BFQ A;  3JAE A;  2XQ3 A;  4IL9 A;  3JAF A;  5AFJ A;  4AFH A;  2BR7 A;  4ZZC A;  5HEU A;  4ZK4 A;  3ZDG A;  2YMD A;  2BYS A;  2BYQ A;  3P4W A;  2BYR A;  5HEH A;  2X00 D;  3C79 A;  3ZDH A;  5SYO A;  2WN9 A;  3UU5 A;  3UU8 A;  3WTL A;  4TWD A;  2XZ6 A;  2XYT A;  1UW6 A;  3WTI A;  4NZB A;  4UM3 A;  3WIP A;  3RQU A;  2BYN A;  5HEO A;  2WZY A;  2Y54 A;  4IRE A;  5J5G A;  5LG3 A;  3UQ4 A;  3U8J A;  5IUX A;  2XQ4 A;  3PMZ A;  5TVC A;  3WTM A;  2BJ0 A;  2XZ5 A;  2WNL A;  3TLT A;  4ILB A;  3UU6 A;  2WNC A;  4HFH A;  5HCJ A;  3C84 A;  4QAA A;  3UUB A;  3EHZ A;  3IGQ A;  4UM1 A;  2XNU A;  4PIR A;  4A97 A;  3SQ9 A;  3RIA A;  2C9T A;  4D01 A;  2Y7Y A;  4UXU A;  1UV6 A;  3RQW A;  4LMK A;  2XNT A;  4QH4 A;  3RHW A;  2ZJV A;  5AIN A;  4HFD A;  3P50 A;  4QAB A;  5JME A;  5L4H A;  3JAD A;  2XQ7 A;  4NPP A;  4ZK1 A;  4IL4 A;  3WTH A;  2BR8 A;  5AFL A;  5L4E A;  3UU4 A;  4TWF A;  4LMJ A;  4ZJT A;  2Y57 A;  2YKS A;  4QAC A;  3RI5 A;  3T4M A;  5AFM A;  4UM3 S;  2WNJ A;  4ILC A;  3U8K A;  5L47 A;  5KZU A;  4TWH A;  2VL0 A;  5CO5 A;  3ZKR A;  2XQA A;  4DBM A;  5AFH A;  3GUA A;  3EAM A;  3U8N A;  2XQ9 A;  4B5D A;  4COF A;  2XQ6 A;  4FRR A;  2X00 A;  4LML A;  3TLU A;  4F8H A;  4HFC A;  2PH9 A; 
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similar chains in the Genus database (?% sequence similarity)
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