3SH1A

Ac-achbp ligand binding domain mutated to human alpha-7 nachr
Total Genus 50
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
50
sequence length
214
structure length
214
Chain Sequence
DDDDKLHSQANLMRLKSDLFNRSPMYPGPTKDDPLTVYLSFSLLDIVKADSSTNEVDLVYWEQQSWKLNSLMWDPNEYGNITDFRTSAADIWTPDITAYSSTRPVQVLSPQNALVNSSGHVQYLPAQRLSFMCDPTGVDSEEGATCAVKFGSWSYGGWEIDLKTDTDQVDLSSYYASSKYEILSATQTRSERFYECCKEPYPDVNLVVKFRERR

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH1 (-5-15)S3 (77-81)EMPTYS1 (29-44)S11 (174-186)S2 (49-61)TI3 (45-48)TI6 (131-134)3H1 (63-65)S8 (120-126)3H2 (69-71)TIV2 (72-75)S7 (114-117)S10 (154-158)TI4 (92-95)TI7 (146-149)S5 (100-101)TII1 (129-132)O1 (127-140)S6 (106-110)TI5 (110-113)TIV3 (134-137)S9 (138-146)S12 (195-206)TI8 (150-153)TIV6 (158-161)TI9 (165-168)TI10 (169-172)TVIII2 (189-192)TI2 (44-47)3H3 (82-84)S4 (90-92)TIV7 (188-191)TVIII1 (15-18)Updating...
connected with : NaN
molecule tags Receptor
source organism Aplysia californica
publication title Creating an alpha-7 nicotinic acetylcholine recognition domain from the acetylcholine binding protein: crystallographic and ligand selectivity analyses
pubmed doi rcsb
molecule keywords Soluble acetylcholine receptor
total genus 50
structure length 214
sequence length 214
chains with identical sequence B, C, D, E, F, G, H, I, J
ec nomenclature
pdb deposition date 2011-06-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02931 Neur_chan_LBD Neurotransmitter-gated ion-channel ligand binding domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.70.170.10 Mainly Beta Distorted Sandwich Acetylcholine Binding Protein; Chain: A, Neurotransmitter-gated ion-channel ligand-binding domain 3sh1A00
3RIAA 2YN6A 3WTLA 2BYNA 5HEJA 2XQ8A 2W8FA 5LG3A 3WTNA 5HEUA 4AFGA 2XQ5A 3P50A 5AINA 1UX2A 4ZZCA 4QH1A 3TLVA 4IL4A 1I9BA 4UM3P 5KE4A 2XZ6A 3WTMA 4TWHA 5TVCA 3WTHA 2YOEA 4EZ1A 2BG9B 4ILCA 4IREA 5BW2A 3SH1A 2XQ9A 5J5HA 5L4EA 4AFTA 2QC1B 2XQ6A 2Y7YA 5BP0A 3WTJA 3U8NA 2BYSA 5HEHA 4B5DA 2WNCA 2XQAA 5SYOA 4HFCA 5HCJA 3U8LA 4LMJA 4A98A 2YMEA 4NPPA 2BJ0A 5HEOA 4AFHA 4LMKA 3UU8A 4BFQA 4A97A 5AFHA 5L4HA 4BQTA 4ZJSA 2X00A 2XNUA 4HFHA 5KZUA 4UY2A 3EAMA 2BYRA 5JMEA 3SQ6A 1UV6A 3RI5A 2WNJA 2BG9A 2YKSA 3PEOA 4D01A 3T4MA 3IGQA 5AFNA 5CO5A 4ZK4A 5J5IA 2YMDA 3TLWA 3P4WA 2BG9C 3EI0A 5J5GA 3ZKRA 3UQ7A 5J5FA 2BR8A 4TNVA 3TLTA 3RQWA 2XQ4A 2UZ6A 4F8HA 5HCMA 4Z91A 5AFMB 3C79A 2XNVA 2XZ5A 3C84A 4QACA 5IUXA 4HFDA 3SIOA 4HFIA 3UUBA 3WTKA 3UU3A 3JAEA 2XQ7A 4HFEA 4QH5A 5L47A 3SQ9A 2Y54A 2BR7A 3ZDGA 2BYPA 2W8GA 2BYQA 2ZJVA 3GUAA 4NZBA 4UM1A 3RQUA 4ILBA 4HQPA 2WNLA 2PH9A 3UU4A 4TWDA 5LXBA 4PIRA 4UM3S 4ZRUA 4ZZBA 2X00D 4TNWA 2Y57A 3WIPA 5J0ZA 4FRRA 5AFMA 4HFBA 3JAFA 1UW6A 4ILAA 4ALXA 4WV9A 3EHZA 2Y58A 2XNTA 4X5TA 4IL9A 2Y56A 4QAAA 3RIFA 2VL0A 2ZJUA 3TLUA 4ZK1A 2WZYA 4UXUA 3UQ4A 5CFBA 3U8MA 2C9TA 3ZDHA 4DBMA 4ZJTA 3JADA 4XHEA 5AFKA 4TWFA 4QH4A 5FJVA 5BRXA 3UU5A 4UM3A 5HEGA 3U8KA 3RHWA 2WN9A 4XK9A 4COFA 4ZR6A 4QABA 5AFLA 4Z90A 3U8JA 3WTOA 4LMLA 3WTIA 2XYSA 3UU6A 2PGZA 3LSVA 3TLSA 2XYTA 5AFJA 2BG9E 2XQ3A 3PMZA
chains in the Genus database with same CATH superfamily
3RIAA 2YN6A 3WTLA 2BYNA 5HEJA 2XQ8A 2W8FA 5LG3A 3WTNA 5HEUA 4AFGA 2XQ5A 3P50A 5AINA 1UX2A 4ZZCA 4QH1A 3TLVA 4IL4A 1I9BA 4UM3P 5KE4A 2XZ6A 3WTMA 4TWHA 5TVCA 3WTHA 2YOEA 4EZ1A 2BG9B 4ILCA 4IREA 5BW2A 3SH1A 2XQ9A 5J5HA 5L4EA 4AFTA 2QC1B 2XQ6A 2Y7YA 5BP0A 3WTJA 3U8NA 2BYSA 5HEHA 4B5DA 2WNCA 2XQAA 5SYOA 4HFCA 5HCJA 3U8LA 4LMJA 4A98A 2YMEA 4NPPA 2BJ0A 5HEOA 4AFHA 4LMKA 3UU8A 4BFQA 4A97A 5AFHA 5L4HA 4BQTA 4ZJSA 2X00A 2XNUA 4HFHA 5KZUA 4UY2A 3EAMA 2BYRA 5JMEA 3SQ6A 1UV6A 3RI5A 2WNJA 2BG9A 2YKSA 3PEOA 4D01A 3T4MA 3IGQA 5AFNA 5CO5A 4ZK4A 5J5IA 2YMDA 3TLWA 3P4WA 2BG9C 3EI0A 5J5GA 3ZKRA 3UQ7A 5J5FA 2BR8A 4TNVA 3TLTA 3RQWA 2XQ4A 2UZ6A 4F8HA 5HCMA 4Z91A 5AFMB 3C79A 2XNVA 2XZ5A 3C84A 4QACA 5IUXA 4HFDA 3SIOA 4HFIA 3UUBA 3WTKA 3UU3A 3JAEA 2XQ7A 4HFEA 4QH5A 5L47A 3SQ9A 2Y54A 2BR7A 3ZDGA 2BYPA 2W8GA 2BYQA 2ZJVA 3GUAA 4NZBA 4UM1A 3RQUA 4ILBA 4HQPA 2WNLA 2PH9A 3UU4A 4TWDA 5LXBA 4PIRA 4UM3S 4ZRUA 4ZZBA 2X00D 4TNWA 2Y57A 3WIPA 5J0ZA 4FRRA 5AFMA 4HFBA 3JAFA 1UW6A 4ILAA 4ALXA 4WV9A 3EHZA 2Y58A 2XNTA 4X5TA 4IL9A 2Y56A 4QAAA 3RIFA 2VL0A 2ZJUA 3TLUA 4ZK1A 2WZYA 4UXUA 3UQ4A 5CFBA 3U8MA 2C9TA 3ZDHA 4DBMA 4ZJTA 3JADA 4XHEA 5AFKA 4TWFA 4QH4A 5FJVA 5BRXA 3UU5A 4UM3A 5HEGA 3U8KA 3RHWA 2WN9A 4XK9A 4COFA 4ZR6A 4QABA 5AFLA 4Z90A 3U8JA 3WTOA 4LMLA 3WTIA 2XYSA 3UU6A 2PGZA 3LSVA 3TLSA 2XYTA 5AFJA 2BG9E 2XQ3A 3PMZA
chains in the Genus database with same CATH topology
3RIAA 2YN6A 3WTLA 2BYNA 5HEJA 2XQ8A 2W8FA 5LG3A 3WTNA 5HEUA 4AFGA 2XQ5A 3P50A 5AINA 1UX2A 4ZZCA 4QH1A 3TLVA 4IL4A 1I9BA 4UM3P 5KE4A 2XZ6A 3WTMA 4TWHA 5TVCA 3WTHA 2YOEA 4EZ1A 2BG9B 4ILCA 4IREA 5BW2A 3SH1A 2XQ9A 5J5HA 5L4EA 4AFTA 2QC1B 2XQ6A 2Y7YA 5BP0A 3WTJA 3U8NA 2BYSA 5HEHA 4B5DA 2WNCA 2XQAA 5SYOA 4HFCA 5HCJA 3U8LA 4LMJA 4A98A 2YMEA 4NPPA 2BJ0A 5HEOA 4AFHA 4LMKA 3UU8A 4BFQA 4A97A 5AFHA 5L4HA 4BQTA 4ZJSA 2X00A 2XNUA 4HFHA 5KZUA 4UY2A 3EAMA 2BYRA 5JMEA 3SQ6A 1UV6A 3RI5A 2WNJA 2BG9A 2YKSA 3PEOA 4D01A 3T4MA 3IGQA 5AFNA 5CO5A 4ZK4A 5J5IA 2YMDA 3TLWA 3P4WA 2BG9C 3EI0A 5J5GA 3ZKRA 3UQ7A 5J5FA 2BR8A 4TNVA 3TLTA 3RQWA 2XQ4A 2UZ6A 4F8HA 5HCMA 4Z91A 5AFMB 3C79A 2XNVA 2XZ5A 3C84A 4QACA 5IUXA 4HFDA 3SIOA 4HFIA 3UUBA 3WTKA 3UU3A 3JAEA 2XQ7A 4HFEA 4QH5A 5L47A 3SQ9A 2Y54A 2BR7A 3ZDGA 2BYPA 2W8GA 2BYQA 2ZJVA 3GUAA 4NZBA 4UM1A 3RQUA 4ILBA 4HQPA 2WNLA 2PH9A 3UU4A 4TWDA 5LXBA 4PIRA 4UM3S 4ZRUA 4ZZBA 2X00D 4TNWA 2Y57A 3WIPA 5J0ZA 4FRRA 5AFMA 4HFBA 3JAFA 1UW6A 4ILAA 4ALXA 4WV9A 3EHZA 2Y58A 2XNTA 4X5TA 4IL9A 2Y56A 4QAAA 3RIFA 2VL0A 2ZJUA 3TLUA 4ZK1A 2WZYA 4UXUA 3UQ4A 5CFBA 3U8MA 2C9TA 3ZDHA 4DBMA 4ZJTA 3JADA 4XHEA 5AFKA 4TWFA 4QH4A 5FJVA 5BRXA 3UU5A 4UM3A 5HEGA 3U8KA 3RHWA 2WN9A 4XK9A 4COFA 4ZR6A 4QABA 5AFLA 4Z90A 3U8JA 3WTOA 4LMLA 3WTIA 2XYSA 3UU6A 2PGZA 3LSVA 3TLSA 2XYTA 5AFJA 2BG9E 2XQ3A 3PMZA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3RIA A;  2YN6 A;  3WTL A;  2BYN A;  5HEJ A;  2XQ8 A;  2W8F A;  5LG3 A;  3WTN A;  5HEU A;  4AFG A;  2XQ5 A;  3P50 A;  5AIN A;  1UX2 A;  4ZZC A;  4QH1 A;  3TLV A;  4IL4 A;  1I9B A;  4UM3 P;  5KE4 A;  2XZ6 A;  3WTM A;  4TWH A;  5TVC A;  3WTH A;  2YOE A;  4EZ1 A;  2BG9 B;  4ILC A;  4IRE A;  5BW2 A;  3SH1 A;  2XQ9 A;  5J5H A;  5L4E A;  4AFT A;  2QC1 B;  2XQ6 A;  2Y7Y A;  5BP0 A;  3WTJ A;  3U8N A;  2BYS A;  5HEH A;  4B5D A;  2WNC A;  2XQA A;  5SYO A;  4HFC A;  5HCJ A;  3U8L A;  4LMJ A;  4A98 A;  2YME A;  4NPP A;  2BJ0 A;  5HEO A;  4AFH A;  4LMK A;  3UU8 A;  4BFQ A;  4A97 A;  5AFH A;  5L4H A;  4BQT A;  4ZJS A;  2X00 A;  2XNU A;  4HFH A;  5KZU A;  4UY2 A;  3EAM A;  2BYR A;  5JME A;  3SQ6 A;  1UV6 A;  3RI5 A;  2WNJ A;  2BG9 A;  2YKS A;  3PEO A;  4D01 A;  3T4M A;  3IGQ A;  5AFN A;  5CO5 A;  4ZK4 A;  5J5I A;  2YMD A;  3TLW A;  3P4W A;  2BG9 C;  3EI0 A;  5J5G A;  3ZKR A;  3UQ7 A;  5J5F A;  2BR8 A;  4TNV A;  3TLT A;  3RQW A;  2XQ4 A;  2UZ6 A;  4F8H A;  5HCM A;  4Z91 A;  5AFM B;  3C79 A;  2XNV A;  2XZ5 A;  3C84 A;  4QAC A;  5IUX A;  4HFD A;  3SIO A;  4HFI A;  3UUB A;  3WTK A;  3UU3 A;  3JAE A;  2XQ7 A;  4HFE A;  4QH5 A;  5L47 A;  3SQ9 A;  2Y54 A;  2BR7 A;  3ZDG A;  2BYP A;  2W8G A;  2BYQ A;  2ZJV A;  3GUA A;  4NZB A;  4UM1 A;  3RQU A;  4ILB A;  4HQP A;  2WNL A;  2PH9 A;  3UU4 A;  4TWD A;  5LXB A;  4PIR A;  4UM3 S;  4ZRU A;  4ZZB A;  2X00 D;  4TNW A;  2Y57 A;  3WIP A;  5J0Z A;  4FRR A;  5AFM A;  4HFB A;  3JAF A;  1UW6 A;  4ILA A;  4ALX A;  4WV9 A;  3EHZ A;  2Y58 A;  2XNT A;  4X5T A;  4IL9 A;  2Y56 A;  4QAA A;  3RIF A;  2VL0 A;  2ZJU A;  3TLU A;  4ZK1 A;  2WZY A;  4UXU A;  3UQ4 A;  5CFB A;  3U8M A;  2C9T A;  3ZDH A;  4DBM A;  4ZJT A;  3JAD A;  4XHE A;  5AFK A;  4TWF A;  4QH4 A;  5FJV A;  5BRX A;  3UU5 A;  4UM3 A;  5HEG A;  3U8K A;  3RHW A;  2WN9 A;  4XK9 A;  4COF A;  4ZR6 A;  4QAB A;  5AFL A;  4Z90 A;  3U8J A;  3WTO A;  4LML A;  3WTI A;  2XYS A;  3UU6 A;  2PGZ A;  3LSV A;  3TLS A;  2XYT A;  5AFJ A;  2BG9 E;  2XQ3 A;  3PMZ A; 
#chains in the Genus database with same CATH topology
 3RIA A;  2YN6 A;  3WTL A;  2BYN A;  5HEJ A;  2XQ8 A;  2W8F A;  5LG3 A;  3WTN A;  5HEU A;  4AFG A;  2XQ5 A;  3P50 A;  5AIN A;  1UX2 A;  4ZZC A;  4QH1 A;  3TLV A;  4IL4 A;  1I9B A;  4UM3 P;  5KE4 A;  2XZ6 A;  3WTM A;  4TWH A;  5TVC A;  3WTH A;  2YOE A;  4EZ1 A;  2BG9 B;  4ILC A;  4IRE A;  5BW2 A;  3SH1 A;  2XQ9 A;  5J5H A;  5L4E A;  4AFT A;  2QC1 B;  2XQ6 A;  2Y7Y A;  5BP0 A;  3WTJ A;  3U8N A;  2BYS A;  5HEH A;  4B5D A;  2WNC A;  2XQA A;  5SYO A;  4HFC A;  5HCJ A;  3U8L A;  4LMJ A;  4A98 A;  2YME A;  4NPP A;  2BJ0 A;  5HEO A;  4AFH A;  4LMK A;  3UU8 A;  4BFQ A;  4A97 A;  5AFH A;  5L4H A;  4BQT A;  4ZJS A;  2X00 A;  2XNU A;  4HFH A;  5KZU A;  4UY2 A;  3EAM A;  2BYR A;  5JME A;  3SQ6 A;  1UV6 A;  3RI5 A;  2WNJ A;  2BG9 A;  2YKS A;  3PEO A;  4D01 A;  3T4M A;  3IGQ A;  5AFN A;  5CO5 A;  4ZK4 A;  5J5I A;  2YMD A;  3TLW A;  3P4W A;  2BG9 C;  3EI0 A;  5J5G A;  3ZKR A;  3UQ7 A;  5J5F A;  2BR8 A;  4TNV A;  3TLT A;  3RQW A;  2XQ4 A;  2UZ6 A;  4F8H A;  5HCM A;  4Z91 A;  5AFM B;  3C79 A;  2XNV A;  2XZ5 A;  3C84 A;  4QAC A;  5IUX A;  4HFD A;  3SIO A;  4HFI A;  3UUB A;  3WTK A;  3UU3 A;  3JAE A;  2XQ7 A;  4HFE A;  4QH5 A;  5L47 A;  3SQ9 A;  2Y54 A;  2BR7 A;  3ZDG A;  2BYP A;  2W8G A;  2BYQ A;  2ZJV A;  3GUA A;  4NZB A;  4UM1 A;  3RQU A;  4ILB A;  4HQP A;  2WNL A;  2PH9 A;  3UU4 A;  4TWD A;  5LXB A;  4PIR A;  4UM3 S;  4ZRU A;  4ZZB A;  2X00 D;  4TNW A;  2Y57 A;  3WIP A;  5J0Z A;  4FRR A;  5AFM A;  4HFB A;  3JAF A;  1UW6 A;  4ILA A;  4ALX A;  4WV9 A;  3EHZ A;  2Y58 A;  2XNT A;  4X5T A;  4IL9 A;  2Y56 A;  4QAA A;  3RIF A;  2VL0 A;  2ZJU A;  3TLU A;  4ZK1 A;  2WZY A;  4UXU A;  3UQ4 A;  5CFB A;  3U8M A;  2C9T A;  3ZDH A;  4DBM A;  4ZJT A;  3JAD A;  4XHE A;  5AFK A;  4TWF A;  4QH4 A;  5FJV A;  5BRX A;  3UU5 A;  4UM3 A;  5HEG A;  3U8K A;  3RHW A;  2WN9 A;  4XK9 A;  4COF A;  4ZR6 A;  4QAB A;  5AFL A;  4Z90 A;  3U8J A;  3WTO A;  4LML A;  3WTI A;  2XYS A;  3UU6 A;  2PGZ A;  3LSV A;  3TLS A;  2XYT A;  5AFJ A;  2BG9 E;  2XQ3 A;  3PMZ A; 
#chains in the Genus database with same CATH homology
 3RIA A;  2YN6 A;  3WTL A;  2BYN A;  5HEJ A;  2XQ8 A;  2W8F A;  5LG3 A;  3WTN A;  5HEU A;  4AFG A;  2XQ5 A;  3P50 A;  5AIN A;  1UX2 A;  4ZZC A;  4QH1 A;  3TLV A;  4IL4 A;  1I9B A;  4UM3 P;  5KE4 A;  2XZ6 A;  3WTM A;  4TWH A;  5TVC A;  3WTH A;  2YOE A;  4EZ1 A;  2BG9 B;  4ILC A;  4IRE A;  5BW2 A;  3SH1 A;  2XQ9 A;  5J5H A;  5L4E A;  4AFT A;  2QC1 B;  2XQ6 A;  2Y7Y A;  5BP0 A;  3WTJ A;  3U8N A;  2BYS A;  5HEH A;  4B5D A;  2WNC A;  2XQA A;  5SYO A;  4HFC A;  5HCJ A;  3U8L A;  4LMJ A;  4A98 A;  2YME A;  4NPP A;  2BJ0 A;  5HEO A;  4AFH A;  4LMK A;  3UU8 A;  4BFQ A;  4A97 A;  5AFH A;  5L4H A;  4BQT A;  4ZJS A;  2X00 A;  2XNU A;  4HFH A;  5KZU A;  4UY2 A;  3EAM A;  2BYR A;  5JME A;  3SQ6 A;  1UV6 A;  3RI5 A;  2WNJ A;  2BG9 A;  2YKS A;  3PEO A;  4D01 A;  3T4M A;  3IGQ A;  5AFN A;  5CO5 A;  4ZK4 A;  5J5I A;  2YMD A;  3TLW A;  3P4W A;  2BG9 C;  3EI0 A;  5J5G A;  3ZKR A;  3UQ7 A;  5J5F A;  2BR8 A;  4TNV A;  3TLT A;  3RQW A;  2XQ4 A;  2UZ6 A;  4F8H A;  5HCM A;  4Z91 A;  5AFM B;  3C79 A;  2XNV A;  2XZ5 A;  3C84 A;  4QAC A;  5IUX A;  4HFD A;  3SIO A;  4HFI A;  3UUB A;  3WTK A;  3UU3 A;  3JAE A;  2XQ7 A;  4HFE A;  4QH5 A;  5L47 A;  3SQ9 A;  2Y54 A;  2BR7 A;  3ZDG A;  2BYP A;  2W8G A;  2BYQ A;  2ZJV A;  3GUA A;  4NZB A;  4UM1 A;  3RQU A;  4ILB A;  4HQP A;  2WNL A;  2PH9 A;  3UU4 A;  4TWD A;  5LXB A;  4PIR A;  4UM3 S;  4ZRU A;  4ZZB A;  2X00 D;  4TNW A;  2Y57 A;  3WIP A;  5J0Z A;  4FRR A;  5AFM A;  4HFB A;  3JAF A;  1UW6 A;  4ILA A;  4ALX A;  4WV9 A;  3EHZ A;  2Y58 A;  2XNT A;  4X5T A;  4IL9 A;  2Y56 A;  4QAA A;  3RIF A;  2VL0 A;  2ZJU A;  3TLU A;  4ZK1 A;  2WZY A;  4UXU A;  3UQ4 A;  5CFB A;  3U8M A;  2C9T A;  3ZDH A;  4DBM A;  4ZJT A;  3JAD A;  4XHE A;  5AFK A;  4TWF A;  4QH4 A;  5FJV A;  5BRX A;  3UU5 A;  4UM3 A;  5HEG A;  3U8K A;  3RHW A;  2WN9 A;  4XK9 A;  4COF A;  4ZR6 A;  4QAB A;  5AFL A;  4Z90 A;  3U8J A;  3WTO A;  4LML A;  3WTI A;  2XYS A;  3UU6 A;  2PGZ A;  3LSV A;  3TLS A;  2XYT A;  5AFJ A;  2BG9 E;  2XQ3 A;  3PMZ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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