3SQ6A

Crystal structures of the ligand binding domain of a pentameric alpha7 nicotinic receptor chimera with its agonist epibatidine
Total Genus 45

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
45
sequence length
204
structure length
204
Chain Sequence
EFQRKLYKELVKNYNPDVIPTQRDRPVTVYFSLSLLQIMDVDEKNQVVDVVFWLQMSWTDHYLQWNVSEYPGVKQVSVPISSLWVPDLAAYNAISKPEVLTPQLALVNSSGHVQYLPSIRQRFSCDVSGVDTESGATCKLKFGSWTHHSRELDLQMQEADISGYIPYSRFELVGVTQKRSERFYECCKEPYPDVTFTVTFRKKG

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH1 (5-11)S3 (76-79)TIV1 (11-14)TI4 (60-63)EMPTYO1 (19-21)TIV2 (22-25)S1 (27-42)TI11 (148-151)S11 (170-183)TIV7 (165-168)TI2 (42-45)TI3 (43-46)O3 (125-138)S2 (47-59)TI7 (108-111)TI5 (61-64)TIV3 (66-69)3H1 (80-82)O2 (102-104)S9 (136-144)S4 (88-90)S5 (93-99)S8 (118-124)TI6 (90-93)S6 (104-107)S7 (112-115)TIV6 (127-130)TI8 (129-132)S12 (190-202)TI9 (132-135)TIV8 (184-187)TI10 (144-147)S10 (152-155)TI13 (161-164)TI1 (15-18)Updating...
connected with : NaN
molecule tags Transport protein/receptor/agonist
source organism Homo sapiens, lymnaea stagnalis
publication title Ligand-binding domain of an alpha 7-nicotinic receptor chimera and its complex with agonist.
pubmed doi rcsb
molecule keywords Neuronal acetylcholine receptor subunit alpha-7, Acetylcholi
total genus 45
structure length 204
sequence length 204
chains with identical sequence B, C, D, E, F, G, H, I, J
ec nomenclature
pdb deposition date 2011-07-05
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.70.170.10 Mainly Beta Distorted Sandwich Acetylcholine Binding Protein; Chain: A, Neurotransmitter-gated ion-channel ligand-binding domain 3sq6A00
3UU4A 5J5HA 2WZYA 5TVCA 2YMDA 5AFNA 2BYRA 4ILAA 3SIOA 2WNLA 4BQTA 3TLWA 4NZBA 3P4WA 4TNWA 3GUAA 3WTNA 5FJVA 3TLUA 3SH1A 3U8MA 5HEJA 3RHWA 4UM3S 4F8HA 2BYSA 4LMKA 3U8JA 2Y56A 2BR8A 5AFHA 3UU5A 3RQUA 5J0ZA 4COFA 2BJ0A 2Y57A 4WV9A 5BP0A 3IGQA 4HQPA 3LSVA 2C9TA 3JAFA 4HFHA 4TWDA 4ALXA 2BYNA 2XNTA 2YMEA 2BG9E 2XQAA 1UW6A 3RIAA 4TNVA 3UU6A 3WTHA 5AFMA 4A97A 3WIPA 4NPPA 3RQWA 3WTIA 2BR7A 4HFDA 3U8LA 4QH1A 5AINA 4D01A 2X00A 4HFCA 4QAAA 4HFBA 3SQ6A 3SQ9A 2BYPA 4Z90A 1I9BA 4FRRA 3PMZA 5LG3A 5AFJA 3U8NA 4ZJTA 2WN9A 3T4MA 5AFKA 4HFEA 3EAMA 2Y54A 4PIRA 1UX2A 4IL4A 4QH5A 5J5FA 3WTJA 4ZZBA 5JMEA 2XYTA 5L47A 3PEOA 2XYSA 4B5DA 2Y7YA 4UM1A 3UU3A 4Z91A 2XQ7A 4AFTA 5AFLA 3WTKA 4X5TA 5J5IA 2BG9B 5LXBA 5SYOA 5KE4A 2QC1B 2XQ4A 4ZR6A 4DBMA 2YN6A 2UZ6A 5HCMA 3WTLA 5CO5A 5J5GA 4TWFA 2YOEA 3ZDGA 2YKSA 2VL0A 4IL9A 2XNVA 5HEOA 3UQ7A 3RI5A 4BFQA 2BG9C 2XQ3A 2ZJUA 3JADA 4TWHA 4XHEA 5L4HA 4ILBA 2Y58A 5HEGA 3TLTA 3JAEA 3ZDHA 3UUBA 2WNCA 5BW2A 2PGZA 3TLSA 4ZJSA 4UM3A 4UXUA 5CFBA 3WTOA 2XQ6A 2ZJVA 4ZK1A 4LMLA 4ZZCA 3P50A 2X00D 4UY2A 3C84A 4AFHA 5BRXA 2XQ9A 2XZ5A 4IREA 4HFIA 4ILCA 4ZRUA 4AFGA 3UU8A 2W8FA 4QABA 4XK9A 5IUXA 2XQ5A 5KZUA 1UV6A 3U8KA 3UQ4A 5AFMB 3RIFA 4LMJA 4ZK4A 5L4EA 3EHZA 5HEHA 4EZ1A 2XQ8A 4QACA 3ZKRA 4A98A 3TLVA 3EI0A 5HEUA 2BYQA 2BG9A 4QH4A 2WNJA 2PH9A 2XNUA 5HCJA 2W8GA 4UM3P 3WTMA 2XZ6A 3C79A
chains in the Genus database with same CATH superfamily
3UU4A 5J5HA 2WZYA 5TVCA 2YMDA 5AFNA 2BYRA 4ILAA 3SIOA 2WNLA 4BQTA 3TLWA 4NZBA 3P4WA 4TNWA 3GUAA 3WTNA 5FJVA 3TLUA 3SH1A 3U8MA 5HEJA 3RHWA 4UM3S 4F8HA 2BYSA 4LMKA 3U8JA 2Y56A 2BR8A 5AFHA 3UU5A 3RQUA 5J0ZA 4COFA 2BJ0A 2Y57A 4WV9A 5BP0A 3IGQA 4HQPA 3LSVA 2C9TA 3JAFA 4HFHA 4TWDA 4ALXA 2BYNA 2XNTA 2YMEA 2BG9E 2XQAA 1UW6A 3RIAA 4TNVA 3UU6A 3WTHA 5AFMA 4A97A 3WIPA 4NPPA 3RQWA 3WTIA 2BR7A 4HFDA 3U8LA 4QH1A 5AINA 4D01A 2X00A 4HFCA 4QAAA 4HFBA 3SQ6A 3SQ9A 2BYPA 4Z90A 1I9BA 4FRRA 3PMZA 5LG3A 5AFJA 3U8NA 4ZJTA 2WN9A 3T4MA 5AFKA 4HFEA 3EAMA 2Y54A 4PIRA 1UX2A 4IL4A 4QH5A 5J5FA 3WTJA 4ZZBA 5JMEA 2XYTA 5L47A 3PEOA 2XYSA 4B5DA 2Y7YA 4UM1A 3UU3A 4Z91A 2XQ7A 4AFTA 5AFLA 3WTKA 4X5TA 5J5IA 2BG9B 5LXBA 5SYOA 5KE4A 2QC1B 2XQ4A 4ZR6A 4DBMA 2YN6A 2UZ6A 5HCMA 3WTLA 5CO5A 5J5GA 4TWFA 2YOEA 3ZDGA 2YKSA 2VL0A 4IL9A 2XNVA 5HEOA 3UQ7A 3RI5A 4BFQA 2BG9C 2XQ3A 2ZJUA 3JADA 4TWHA 4XHEA 5L4HA 4ILBA 2Y58A 5HEGA 3TLTA 3JAEA 3ZDHA 3UUBA 2WNCA 5BW2A 2PGZA 3TLSA 4ZJSA 4UM3A 4UXUA 5CFBA 3WTOA 2XQ6A 2ZJVA 4ZK1A 4LMLA 4ZZCA 3P50A 2X00D 4UY2A 3C84A 4AFHA 5BRXA 2XQ9A 2XZ5A 4IREA 4HFIA 4ILCA 4ZRUA 4AFGA 3UU8A 2W8FA 4QABA 4XK9A 5IUXA 2XQ5A 5KZUA 1UV6A 3U8KA 3UQ4A 5AFMB 3RIFA 4LMJA 4ZK4A 5L4EA 3EHZA 5HEHA 4EZ1A 2XQ8A 4QACA 3ZKRA 4A98A 3TLVA 3EI0A 5HEUA 2BYQA 2BG9A 4QH4A 2WNJA 2PH9A 2XNUA 5HCJA 2W8GA 4UM3P 3WTMA 2XZ6A 3C79A
chains in the Genus database with same CATH topology
3UU4A 5J5HA 2WZYA 5TVCA 2YMDA 5AFNA 2BYRA 4ILAA 3SIOA 2WNLA 4BQTA 3TLWA 4NZBA 3P4WA 4TNWA 3GUAA 3WTNA 5FJVA 3TLUA 3SH1A 3U8MA 5HEJA 3RHWA 4UM3S 4F8HA 2BYSA 4LMKA 3U8JA 2Y56A 2BR8A 5AFHA 3UU5A 3RQUA 5J0ZA 4COFA 2BJ0A 2Y57A 4WV9A 5BP0A 3IGQA 4HQPA 3LSVA 2C9TA 3JAFA 4HFHA 4TWDA 4ALXA 2BYNA 2XNTA 2YMEA 2BG9E 2XQAA 1UW6A 3RIAA 4TNVA 3UU6A 3WTHA 5AFMA 4A97A 3WIPA 4NPPA 3RQWA 3WTIA 2BR7A 4HFDA 3U8LA 4QH1A 5AINA 4D01A 2X00A 4HFCA 4QAAA 4HFBA 3SQ6A 3SQ9A 2BYPA 4Z90A 1I9BA 4FRRA 3PMZA 5LG3A 5AFJA 3U8NA 4ZJTA 2WN9A 3T4MA 5AFKA 4HFEA 3EAMA 2Y54A 4PIRA 1UX2A 4IL4A 4QH5A 5J5FA 3WTJA 4ZZBA 5JMEA 2XYTA 5L47A 3PEOA 2XYSA 4B5DA 2Y7YA 4UM1A 3UU3A 4Z91A 2XQ7A 4AFTA 5AFLA 3WTKA 4X5TA 5J5IA 2BG9B 5LXBA 5SYOA 5KE4A 2QC1B 2XQ4A 4ZR6A 4DBMA 2YN6A 2UZ6A 5HCMA 3WTLA 5CO5A 5J5GA 4TWFA 2YOEA 3ZDGA 2YKSA 2VL0A 4IL9A 2XNVA 5HEOA 3UQ7A 3RI5A 4BFQA 2BG9C 2XQ3A 2ZJUA 3JADA 4TWHA 4XHEA 5L4HA 4ILBA 2Y58A 5HEGA 3TLTA 3JAEA 3ZDHA 3UUBA 2WNCA 5BW2A 2PGZA 3TLSA 4ZJSA 4UM3A 4UXUA 5CFBA 3WTOA 2XQ6A 2ZJVA 4ZK1A 4LMLA 4ZZCA 3P50A 2X00D 4UY2A 3C84A 4AFHA 5BRXA 2XQ9A 2XZ5A 4IREA 4HFIA 4ILCA 4ZRUA 4AFGA 3UU8A 2W8FA 4QABA 4XK9A 5IUXA 2XQ5A 5KZUA 1UV6A 3U8KA 3UQ4A 5AFMB 3RIFA 4LMJA 4ZK4A 5L4EA 3EHZA 5HEHA 4EZ1A 2XQ8A 4QACA 3ZKRA 4A98A 3TLVA 3EI0A 5HEUA 2BYQA 2BG9A 4QH4A 2WNJA 2PH9A 2XNUA 5HCJA 2W8GA 4UM3P 3WTMA 2XZ6A 3C79A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3UU4 A;  5J5H A;  2WZY A;  5TVC A;  2YMD A;  5AFN A;  2BYR A;  4ILA A;  3SIO A;  2WNL A;  4BQT A;  3TLW A;  4NZB A;  3P4W A;  4TNW A;  3GUA A;  3WTN A;  5FJV A;  3TLU A;  3SH1 A;  3U8M A;  5HEJ A;  3RHW A;  4UM3 S;  4F8H A;  2BYS A;  4LMK A;  3U8J A;  2Y56 A;  2BR8 A;  5AFH A;  3UU5 A;  3RQU A;  5J0Z A;  4COF A;  2BJ0 A;  2Y57 A;  4WV9 A;  5BP0 A;  3IGQ A;  4HQP A;  3LSV A;  2C9T A;  3JAF A;  4HFH A;  4TWD A;  4ALX A;  2BYN A;  2XNT A;  2YME A;  2BG9 E;  2XQA A;  1UW6 A;  3RIA A;  4TNV A;  3UU6 A;  3WTH A;  5AFM A;  4A97 A;  3WIP A;  4NPP A;  3RQW A;  3WTI A;  2BR7 A;  4HFD A;  3U8L A;  4QH1 A;  5AIN A;  4D01 A;  2X00 A;  4HFC A;  4QAA A;  4HFB A;  3SQ6 A;  3SQ9 A;  2BYP A;  4Z90 A;  1I9B A;  4FRR A;  3PMZ A;  5LG3 A;  5AFJ A;  3U8N A;  4ZJT A;  2WN9 A;  3T4M A;  5AFK A;  4HFE A;  3EAM A;  2Y54 A;  4PIR A;  1UX2 A;  4IL4 A;  4QH5 A;  5J5F A;  3WTJ A;  4ZZB A;  5JME A;  2XYT A;  5L47 A;  3PEO A;  2XYS A;  4B5D A;  2Y7Y A;  4UM1 A;  3UU3 A;  4Z91 A;  2XQ7 A;  4AFT A;  5AFL A;  3WTK A;  4X5T A;  5J5I A;  2BG9 B;  5LXB A;  5SYO A;  5KE4 A;  2QC1 B;  2XQ4 A;  4ZR6 A;  4DBM A;  2YN6 A;  2UZ6 A;  5HCM A;  3WTL A;  5CO5 A;  5J5G A;  4TWF A;  2YOE A;  3ZDG A;  2YKS A;  2VL0 A;  4IL9 A;  2XNV A;  5HEO A;  3UQ7 A;  3RI5 A;  4BFQ A;  2BG9 C;  2XQ3 A;  2ZJU A;  3JAD A;  4TWH A;  4XHE A;  5L4H A;  4ILB A;  2Y58 A;  5HEG A;  3TLT A;  3JAE A;  3ZDH A;  3UUB A;  2WNC A;  5BW2 A;  2PGZ A;  3TLS A;  4ZJS A;  4UM3 A;  4UXU A;  5CFB A;  3WTO A;  2XQ6 A;  2ZJV A;  4ZK1 A;  4LML A;  4ZZC A;  3P50 A;  2X00 D;  4UY2 A;  3C84 A;  4AFH A;  5BRX A;  2XQ9 A;  2XZ5 A;  4IRE A;  4HFI A;  4ILC A;  4ZRU A;  4AFG A;  3UU8 A;  2W8F A;  4QAB A;  4XK9 A;  5IUX A;  2XQ5 A;  5KZU A;  1UV6 A;  3U8K A;  3UQ4 A;  5AFM B;  3RIF A;  4LMJ A;  4ZK4 A;  5L4E A;  3EHZ A;  5HEH A;  4EZ1 A;  2XQ8 A;  4QAC A;  3ZKR A;  4A98 A;  3TLV A;  3EI0 A;  5HEU A;  2BYQ A;  2BG9 A;  4QH4 A;  2WNJ A;  2PH9 A;  2XNU A;  5HCJ A;  2W8G A;  4UM3 P;  3WTM A;  2XZ6 A;  3C79 A; 
#chains in the Genus database with same CATH topology
 3UU4 A;  5J5H A;  2WZY A;  5TVC A;  2YMD A;  5AFN A;  2BYR A;  4ILA A;  3SIO A;  2WNL A;  4BQT A;  3TLW A;  4NZB A;  3P4W A;  4TNW A;  3GUA A;  3WTN A;  5FJV A;  3TLU A;  3SH1 A;  3U8M A;  5HEJ A;  3RHW A;  4UM3 S;  4F8H A;  2BYS A;  4LMK A;  3U8J A;  2Y56 A;  2BR8 A;  5AFH A;  3UU5 A;  3RQU A;  5J0Z A;  4COF A;  2BJ0 A;  2Y57 A;  4WV9 A;  5BP0 A;  3IGQ A;  4HQP A;  3LSV A;  2C9T A;  3JAF A;  4HFH A;  4TWD A;  4ALX A;  2BYN A;  2XNT A;  2YME A;  2BG9 E;  2XQA A;  1UW6 A;  3RIA A;  4TNV A;  3UU6 A;  3WTH A;  5AFM A;  4A97 A;  3WIP A;  4NPP A;  3RQW A;  3WTI A;  2BR7 A;  4HFD A;  3U8L A;  4QH1 A;  5AIN A;  4D01 A;  2X00 A;  4HFC A;  4QAA A;  4HFB A;  3SQ6 A;  3SQ9 A;  2BYP A;  4Z90 A;  1I9B A;  4FRR A;  3PMZ A;  5LG3 A;  5AFJ A;  3U8N A;  4ZJT A;  2WN9 A;  3T4M A;  5AFK A;  4HFE A;  3EAM A;  2Y54 A;  4PIR A;  1UX2 A;  4IL4 A;  4QH5 A;  5J5F A;  3WTJ A;  4ZZB A;  5JME A;  2XYT A;  5L47 A;  3PEO A;  2XYS A;  4B5D A;  2Y7Y A;  4UM1 A;  3UU3 A;  4Z91 A;  2XQ7 A;  4AFT A;  5AFL A;  3WTK A;  4X5T A;  5J5I A;  2BG9 B;  5LXB A;  5SYO A;  5KE4 A;  2QC1 B;  2XQ4 A;  4ZR6 A;  4DBM A;  2YN6 A;  2UZ6 A;  5HCM A;  3WTL A;  5CO5 A;  5J5G A;  4TWF A;  2YOE A;  3ZDG A;  2YKS A;  2VL0 A;  4IL9 A;  2XNV A;  5HEO A;  3UQ7 A;  3RI5 A;  4BFQ A;  2BG9 C;  2XQ3 A;  2ZJU A;  3JAD A;  4TWH A;  4XHE A;  5L4H A;  4ILB A;  2Y58 A;  5HEG A;  3TLT A;  3JAE A;  3ZDH A;  3UUB A;  2WNC A;  5BW2 A;  2PGZ A;  3TLS A;  4ZJS A;  4UM3 A;  4UXU A;  5CFB A;  3WTO A;  2XQ6 A;  2ZJV A;  4ZK1 A;  4LML A;  4ZZC A;  3P50 A;  2X00 D;  4UY2 A;  3C84 A;  4AFH A;  5BRX A;  2XQ9 A;  2XZ5 A;  4IRE A;  4HFI A;  4ILC A;  4ZRU A;  4AFG A;  3UU8 A;  2W8F A;  4QAB A;  4XK9 A;  5IUX A;  2XQ5 A;  5KZU A;  1UV6 A;  3U8K A;  3UQ4 A;  5AFM B;  3RIF A;  4LMJ A;  4ZK4 A;  5L4E A;  3EHZ A;  5HEH A;  4EZ1 A;  2XQ8 A;  4QAC A;  3ZKR A;  4A98 A;  3TLV A;  3EI0 A;  5HEU A;  2BYQ A;  2BG9 A;  4QH4 A;  2WNJ A;  2PH9 A;  2XNU A;  5HCJ A;  2W8G A;  4UM3 P;  3WTM A;  2XZ6 A;  3C79 A; 
#chains in the Genus database with same CATH homology
 3UU4 A;  5J5H A;  2WZY A;  5TVC A;  2YMD A;  5AFN A;  2BYR A;  4ILA A;  3SIO A;  2WNL A;  4BQT A;  3TLW A;  4NZB A;  3P4W A;  4TNW A;  3GUA A;  3WTN A;  5FJV A;  3TLU A;  3SH1 A;  3U8M A;  5HEJ A;  3RHW A;  4UM3 S;  4F8H A;  2BYS A;  4LMK A;  3U8J A;  2Y56 A;  2BR8 A;  5AFH A;  3UU5 A;  3RQU A;  5J0Z A;  4COF A;  2BJ0 A;  2Y57 A;  4WV9 A;  5BP0 A;  3IGQ A;  4HQP A;  3LSV A;  2C9T A;  3JAF A;  4HFH A;  4TWD A;  4ALX A;  2BYN A;  2XNT A;  2YME A;  2BG9 E;  2XQA A;  1UW6 A;  3RIA A;  4TNV A;  3UU6 A;  3WTH A;  5AFM A;  4A97 A;  3WIP A;  4NPP A;  3RQW A;  3WTI A;  2BR7 A;  4HFD A;  3U8L A;  4QH1 A;  5AIN A;  4D01 A;  2X00 A;  4HFC A;  4QAA A;  4HFB A;  3SQ6 A;  3SQ9 A;  2BYP A;  4Z90 A;  1I9B A;  4FRR A;  3PMZ A;  5LG3 A;  5AFJ A;  3U8N A;  4ZJT A;  2WN9 A;  3T4M A;  5AFK A;  4HFE A;  3EAM A;  2Y54 A;  4PIR A;  1UX2 A;  4IL4 A;  4QH5 A;  5J5F A;  3WTJ A;  4ZZB A;  5JME A;  2XYT A;  5L47 A;  3PEO A;  2XYS A;  4B5D A;  2Y7Y A;  4UM1 A;  3UU3 A;  4Z91 A;  2XQ7 A;  4AFT A;  5AFL A;  3WTK A;  4X5T A;  5J5I A;  2BG9 B;  5LXB A;  5SYO A;  5KE4 A;  2QC1 B;  2XQ4 A;  4ZR6 A;  4DBM A;  2YN6 A;  2UZ6 A;  5HCM A;  3WTL A;  5CO5 A;  5J5G A;  4TWF A;  2YOE A;  3ZDG A;  2YKS A;  2VL0 A;  4IL9 A;  2XNV A;  5HEO A;  3UQ7 A;  3RI5 A;  4BFQ A;  2BG9 C;  2XQ3 A;  2ZJU A;  3JAD A;  4TWH A;  4XHE A;  5L4H A;  4ILB A;  2Y58 A;  5HEG A;  3TLT A;  3JAE A;  3ZDH A;  3UUB A;  2WNC A;  5BW2 A;  2PGZ A;  3TLS A;  4ZJS A;  4UM3 A;  4UXU A;  5CFB A;  3WTO A;  2XQ6 A;  2ZJV A;  4ZK1 A;  4LML A;  4ZZC A;  3P50 A;  2X00 D;  4UY2 A;  3C84 A;  4AFH A;  5BRX A;  2XQ9 A;  2XZ5 A;  4IRE A;  4HFI A;  4ILC A;  4ZRU A;  4AFG A;  3UU8 A;  2W8F A;  4QAB A;  4XK9 A;  5IUX A;  2XQ5 A;  5KZU A;  1UV6 A;  3U8K A;  3UQ4 A;  5AFM B;  3RIF A;  4LMJ A;  4ZK4 A;  5L4E A;  3EHZ A;  5HEH A;  4EZ1 A;  2XQ8 A;  4QAC A;  3ZKR A;  4A98 A;  3TLV A;  3EI0 A;  5HEU A;  2BYQ A;  2BG9 A;  4QH4 A;  2WNJ A;  2PH9 A;  2XNU A;  5HCJ A;  2W8G A;  4UM3 P;  3WTM A;  2XZ6 A;  3C79 A; 
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similar chains in the Genus database (?% sequence similarity)
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