3U8KA

Crystal structure of the acetylcholine binding protein (achbp) from lymnaea stagnalis in complex with ns3573 (1-(5-ethoxypyridin-3-yl)-1,4-diazepane)
Total Genus 49

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
49
sequence length
209
structure length
209
Chain Sequence
LDRADILYNIRQTSRPDVIPTQRDRPVAVSVSLKFINILEVNEITNEVDVVFWQQTTWSDRTLAWNSSHSPDQVSVPISSLWVPDLAAYNAISKPEVLTPQLARVVSDGEVLYMPSIRQRFSCDVSGVDTESGATCRIKIGSWTHHSREISVDPTTENSDDSEYFSQYSRFEILDVTQKKNSVTYSCCPEAYEDVEVSLNFRKKGRSEI

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
O1 (19-21)TIV1 (21-24)TI'1 (22-25)S1 (27-42)TI8 (146-149)EMPTYS8 (116-122)TIV2 (42-45)TII1 (125-128)O3 (123-136)TI2 (43-46)S2 (47-59)TIV3 (67-70)TI4 (106-109)3H2 (78-80)S3 (73-77)O2 (100-102)S9 (134-142)S4 (86-88)TI3 (88-91)S5 (96-97)S6 (102-106)S7 (110-113)TI5 (127-130)S12 (191-203)TI12 (185-188)TI7 (142-145)S10 (150-154)TI10 (162-165)TIV4 (160-163)S11 (171-184)TI11 (166-169)TI1 (15-18)TI6 (130-133)3H3 (206-208)AH1 (3-13)3H1 (61-63)Updating...
connected with : NaN
molecule tags Acetylcholine-binding protein/agonist
source organism Lymnaea stagnalis
publication title Intersubunit bridge formation governs agonist efficacy at nicotinic acetylcholine alpha 4 beta 2 receptors: unique role of halogen bonding revealed.
pubmed doi rcsb
molecule keywords Acetylcholine-binding protein
total genus 49
structure length 209
sequence length 209
chains with identical sequence B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T
ec nomenclature
pdb deposition date 2011-10-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02931 Neur_chan_LBD Neurotransmitter-gated ion-channel ligand binding domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.70.170.10 Mainly Beta Distorted Sandwich Acetylcholine Binding Protein; Chain: A, Neurotransmitter-gated ion-channel ligand-binding domain 3u8kA00
5AFJA 2XZ5A 3PEOA 3WTNA 2BR8A 2XNUA 4QAAA 3JAEA 2QC1B 3TLVA 2BYRA 3RQUA 4XHEA 3P50A 4ALXA 5BP0A 4ILBA 4XK9A 4ZK4A 3RQWA 4COFA 3WTIA 5CFBA 2PGZA 3C79A 3C84A 1UV6A 5HCJA 3WTOA 3TLTA 3WTKA 4ZK1A 2Y54A 3JADA 5AFHA 4HFHA 1UW6A 4WV9A 4NZBA 3UQ7A 3WIPA 3IGQA 2WNCA 2XQ3A 2Y56A 2YN6A 5L47A 2Y7YA 4A98A 5FJVA 4TWFA 5TVCA 3ZKRA 2WZYA 4TNWA 5BRXA 5KE4A 5AFMB 5LXBA 2W8GA 4UY2A 4QH4A 4ZJSA 2XNVA 4TNVA 4F8HA 3RHWA 5HEJA 5J5IA 3P4WA 3TLSA 2UZ6A 2ZJUA 4A97A 4Z91A 5AFKA 3RI5A 4AFHA 3SIOA 5AFMA 4HQPA 5J5HA 3EI0A 4QACA 3TLUA 3UU8A 2YMEA 4UM3P 3RIAA 4LMKA 3WTJA 5HEHA 4BQTA 3RIFA 4IL4A 2XZ6A 3GUAA 5L4EA 2BYPA 4LMJA 2WNLA 2PH9A 4B5DA 4IREA 5JMEA 2VL0A 2XQ6A 2XQ4A 4TWDA 4D01A 5IUXA 5J5FA 4HFIA 3ZDGA 3UQ4A 4UM1A 4ILCA 5CO5A 5HEUA 4UXUA 3TLWA 1UX2A 3U8KA 3ZDHA 4QABA 4ZJTA 3UU6A 4ZZCA 4X5TA 3PMZA 2BYSA 4FRRA 3U8LA 5KZUA 2BR7A 2XQ5A 2XQ9A 3WTLA 4AFTA 3JAFA 5HEOA 5AFLA 2BG9E 2XQ8A 5LG3A 2BYQA 4ZR6A 4DBMA 2XYSA 5J0ZA 2BJ0A 3WTHA 3UU5A 4IL9A 4QH5A 2WNJA 4ILAA 4LMLA 2BG9B 4HFCA 2WN9A 2YOEA 4EZ1A 4UM3S 4BFQA 5AINA 3UUBA 4NPPA 4PIRA 5HEGA 5L4HA 3SH1A 1I9BA 2W8FA 3EHZA 2BG9A 2XQ7A 3UU3A 4Z90A 3SQ9A 4ZRUA 4QH1A 4TWHA 2C9TA 2Y57A 2YMDA 2X00D 5HCMA 3UU4A 2Y58A 2YKSA 2BYNA 5BW2A 4HFEA 3SQ6A 4HFDA 3WTMA 3U8JA 5SYOA 4UM3A 2BG9C 2XNTA 2ZJVA 3U8MA 5AFNA 3T4MA 4AFGA 3EAMA 2X00A 2XQAA 3LSVA 3U8NA 5J5GA 4ZZBA 4HFBA 2XYTA
chains in the Genus database with same CATH superfamily
5AFJA 2XZ5A 3PEOA 3WTNA 2BR8A 2XNUA 4QAAA 3JAEA 2QC1B 3TLVA 2BYRA 3RQUA 4XHEA 3P50A 4ALXA 5BP0A 4ILBA 4XK9A 4ZK4A 3RQWA 4COFA 3WTIA 5CFBA 2PGZA 3C79A 3C84A 1UV6A 5HCJA 3WTOA 3TLTA 3WTKA 4ZK1A 2Y54A 3JADA 5AFHA 4HFHA 1UW6A 4WV9A 4NZBA 3UQ7A 3WIPA 3IGQA 2WNCA 2XQ3A 2Y56A 2YN6A 5L47A 2Y7YA 4A98A 5FJVA 4TWFA 5TVCA 3ZKRA 2WZYA 4TNWA 5BRXA 5KE4A 5AFMB 5LXBA 2W8GA 4UY2A 4QH4A 4ZJSA 2XNVA 4TNVA 4F8HA 3RHWA 5HEJA 5J5IA 3P4WA 3TLSA 2UZ6A 2ZJUA 4A97A 4Z91A 5AFKA 3RI5A 4AFHA 3SIOA 5AFMA 4HQPA 5J5HA 3EI0A 4QACA 3TLUA 3UU8A 2YMEA 4UM3P 3RIAA 4LMKA 3WTJA 5HEHA 4BQTA 3RIFA 4IL4A 2XZ6A 3GUAA 5L4EA 2BYPA 4LMJA 2WNLA 2PH9A 4B5DA 4IREA 5JMEA 2VL0A 2XQ6A 2XQ4A 4TWDA 4D01A 5IUXA 5J5FA 4HFIA 3ZDGA 3UQ4A 4UM1A 4ILCA 5CO5A 5HEUA 4UXUA 3TLWA 1UX2A 3U8KA 3ZDHA 4QABA 4ZJTA 3UU6A 4ZZCA 4X5TA 3PMZA 2BYSA 4FRRA 3U8LA 5KZUA 2BR7A 2XQ5A 2XQ9A 3WTLA 4AFTA 3JAFA 5HEOA 5AFLA 2BG9E 2XQ8A 5LG3A 2BYQA 4ZR6A 4DBMA 2XYSA 5J0ZA 2BJ0A 3WTHA 3UU5A 4IL9A 4QH5A 2WNJA 4ILAA 4LMLA 2BG9B 4HFCA 2WN9A 2YOEA 4EZ1A 4UM3S 4BFQA 5AINA 3UUBA 4NPPA 4PIRA 5HEGA 5L4HA 3SH1A 1I9BA 2W8FA 3EHZA 2BG9A 2XQ7A 3UU3A 4Z90A 3SQ9A 4ZRUA 4QH1A 4TWHA 2C9TA 2Y57A 2YMDA 2X00D 5HCMA 3UU4A 2Y58A 2YKSA 2BYNA 5BW2A 4HFEA 3SQ6A 4HFDA 3WTMA 3U8JA 5SYOA 4UM3A 2BG9C 2XNTA 2ZJVA 3U8MA 5AFNA 3T4MA 4AFGA 3EAMA 2X00A 2XQAA 3LSVA 3U8NA 5J5GA 4ZZBA 4HFBA 2XYTA
chains in the Genus database with same CATH topology
5AFJA 2XZ5A 3PEOA 3WTNA 2BR8A 2XNUA 4QAAA 3JAEA 2QC1B 3TLVA 2BYRA 3RQUA 4XHEA 3P50A 4ALXA 5BP0A 4ILBA 4XK9A 4ZK4A 3RQWA 4COFA 3WTIA 5CFBA 2PGZA 3C79A 3C84A 1UV6A 5HCJA 3WTOA 3TLTA 3WTKA 4ZK1A 2Y54A 3JADA 5AFHA 4HFHA 1UW6A 4WV9A 4NZBA 3UQ7A 3WIPA 3IGQA 2WNCA 2XQ3A 2Y56A 2YN6A 5L47A 2Y7YA 4A98A 5FJVA 4TWFA 5TVCA 3ZKRA 2WZYA 4TNWA 5BRXA 5KE4A 5AFMB 5LXBA 2W8GA 4UY2A 4QH4A 4ZJSA 2XNVA 4TNVA 4F8HA 3RHWA 5HEJA 5J5IA 3P4WA 3TLSA 2UZ6A 2ZJUA 4A97A 4Z91A 5AFKA 3RI5A 4AFHA 3SIOA 5AFMA 4HQPA 5J5HA 3EI0A 4QACA 3TLUA 3UU8A 2YMEA 4UM3P 3RIAA 4LMKA 3WTJA 5HEHA 4BQTA 3RIFA 4IL4A 2XZ6A 3GUAA 5L4EA 2BYPA 4LMJA 2WNLA 2PH9A 4B5DA 4IREA 5JMEA 2VL0A 2XQ6A 2XQ4A 4TWDA 4D01A 5IUXA 5J5FA 4HFIA 3ZDGA 3UQ4A 4UM1A 4ILCA 5CO5A 5HEUA 4UXUA 3TLWA 1UX2A 3U8KA 3ZDHA 4QABA 4ZJTA 3UU6A 4ZZCA 4X5TA 3PMZA 2BYSA 4FRRA 3U8LA 5KZUA 2BR7A 2XQ5A 2XQ9A 3WTLA 4AFTA 3JAFA 5HEOA 5AFLA 2BG9E 2XQ8A 5LG3A 2BYQA 4ZR6A 4DBMA 2XYSA 5J0ZA 2BJ0A 3WTHA 3UU5A 4IL9A 4QH5A 2WNJA 4ILAA 4LMLA 2BG9B 4HFCA 2WN9A 2YOEA 4EZ1A 4UM3S 4BFQA 5AINA 3UUBA 4NPPA 4PIRA 5HEGA 5L4HA 3SH1A 1I9BA 2W8FA 3EHZA 2BG9A 2XQ7A 3UU3A 4Z90A 3SQ9A 4ZRUA 4QH1A 4TWHA 2C9TA 2Y57A 2YMDA 2X00D 5HCMA 3UU4A 2Y58A 2YKSA 2BYNA 5BW2A 4HFEA 3SQ6A 4HFDA 3WTMA 3U8JA 5SYOA 4UM3A 2BG9C 2XNTA 2ZJVA 3U8MA 5AFNA 3T4MA 4AFGA 3EAMA 2X00A 2XQAA 3LSVA 3U8NA 5J5GA 4ZZBA 4HFBA 2XYTA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5AFJ A;  2XZ5 A;  3PEO A;  3WTN A;  2BR8 A;  2XNU A;  4QAA A;  3JAE A;  2QC1 B;  3TLV A;  2BYR A;  3RQU A;  4XHE A;  3P50 A;  4ALX A;  5BP0 A;  4ILB A;  4XK9 A;  4ZK4 A;  3RQW A;  4COF A;  3WTI A;  5CFB A;  2PGZ A;  3C79 A;  3C84 A;  1UV6 A;  5HCJ A;  3WTO A;  3TLT A;  3WTK A;  4ZK1 A;  2Y54 A;  3JAD A;  5AFH A;  4HFH A;  1UW6 A;  4WV9 A;  4NZB A;  3UQ7 A;  3WIP A;  3IGQ A;  2WNC A;  2XQ3 A;  2Y56 A;  2YN6 A;  5L47 A;  2Y7Y A;  4A98 A;  5FJV A;  4TWF A;  5TVC A;  3ZKR A;  2WZY A;  4TNW A;  5BRX A;  5KE4 A;  5AFM B;  5LXB A;  2W8G A;  4UY2 A;  4QH4 A;  4ZJS A;  2XNV A;  4TNV A;  4F8H A;  3RHW A;  5HEJ A;  5J5I A;  3P4W A;  3TLS A;  2UZ6 A;  2ZJU A;  4A97 A;  4Z91 A;  5AFK A;  3RI5 A;  4AFH A;  3SIO A;  5AFM A;  4HQP A;  5J5H A;  3EI0 A;  4QAC A;  3TLU A;  3UU8 A;  2YME A;  4UM3 P;  3RIA A;  4LMK A;  3WTJ A;  5HEH A;  4BQT A;  3RIF A;  4IL4 A;  2XZ6 A;  3GUA A;  5L4E A;  2BYP A;  4LMJ A;  2WNL A;  2PH9 A;  4B5D A;  4IRE A;  5JME A;  2VL0 A;  2XQ6 A;  2XQ4 A;  4TWD A;  4D01 A;  5IUX A;  5J5F A;  4HFI A;  3ZDG A;  3UQ4 A;  4UM1 A;  4ILC A;  5CO5 A;  5HEU A;  4UXU A;  3TLW A;  1UX2 A;  3U8K A;  3ZDH A;  4QAB A;  4ZJT A;  3UU6 A;  4ZZC A;  4X5T A;  3PMZ A;  2BYS A;  4FRR A;  3U8L A;  5KZU A;  2BR7 A;  2XQ5 A;  2XQ9 A;  3WTL A;  4AFT A;  3JAF A;  5HEO A;  5AFL A;  2BG9 E;  2XQ8 A;  5LG3 A;  2BYQ A;  4ZR6 A;  4DBM A;  2XYS A;  5J0Z A;  2BJ0 A;  3WTH A;  3UU5 A;  4IL9 A;  4QH5 A;  2WNJ A;  4ILA A;  4LML A;  2BG9 B;  4HFC A;  2WN9 A;  2YOE A;  4EZ1 A;  4UM3 S;  4BFQ A;  5AIN A;  3UUB A;  4NPP A;  4PIR A;  5HEG A;  5L4H A;  3SH1 A;  1I9B A;  2W8F A;  3EHZ A;  2BG9 A;  2XQ7 A;  3UU3 A;  4Z90 A;  3SQ9 A;  4ZRU A;  4QH1 A;  4TWH A;  2C9T A;  2Y57 A;  2YMD A;  2X00 D;  5HCM A;  3UU4 A;  2Y58 A;  2YKS A;  2BYN A;  5BW2 A;  4HFE A;  3SQ6 A;  4HFD A;  3WTM A;  3U8J A;  5SYO A;  4UM3 A;  2BG9 C;  2XNT A;  2ZJV A;  3U8M A;  5AFN A;  3T4M A;  4AFG A;  3EAM A;  2X00 A;  2XQA A;  3LSV A;  3U8N A;  5J5G A;  4ZZB A;  4HFB A;  2XYT A; 
#chains in the Genus database with same CATH topology
 5AFJ A;  2XZ5 A;  3PEO A;  3WTN A;  2BR8 A;  2XNU A;  4QAA A;  3JAE A;  2QC1 B;  3TLV A;  2BYR A;  3RQU A;  4XHE A;  3P50 A;  4ALX A;  5BP0 A;  4ILB A;  4XK9 A;  4ZK4 A;  3RQW A;  4COF A;  3WTI A;  5CFB A;  2PGZ A;  3C79 A;  3C84 A;  1UV6 A;  5HCJ A;  3WTO A;  3TLT A;  3WTK A;  4ZK1 A;  2Y54 A;  3JAD A;  5AFH A;  4HFH A;  1UW6 A;  4WV9 A;  4NZB A;  3UQ7 A;  3WIP A;  3IGQ A;  2WNC A;  2XQ3 A;  2Y56 A;  2YN6 A;  5L47 A;  2Y7Y A;  4A98 A;  5FJV A;  4TWF A;  5TVC A;  3ZKR A;  2WZY A;  4TNW A;  5BRX A;  5KE4 A;  5AFM B;  5LXB A;  2W8G A;  4UY2 A;  4QH4 A;  4ZJS A;  2XNV A;  4TNV A;  4F8H A;  3RHW A;  5HEJ A;  5J5I A;  3P4W A;  3TLS A;  2UZ6 A;  2ZJU A;  4A97 A;  4Z91 A;  5AFK A;  3RI5 A;  4AFH A;  3SIO A;  5AFM A;  4HQP A;  5J5H A;  3EI0 A;  4QAC A;  3TLU A;  3UU8 A;  2YME A;  4UM3 P;  3RIA A;  4LMK A;  3WTJ A;  5HEH A;  4BQT A;  3RIF A;  4IL4 A;  2XZ6 A;  3GUA A;  5L4E A;  2BYP A;  4LMJ A;  2WNL A;  2PH9 A;  4B5D A;  4IRE A;  5JME A;  2VL0 A;  2XQ6 A;  2XQ4 A;  4TWD A;  4D01 A;  5IUX A;  5J5F A;  4HFI A;  3ZDG A;  3UQ4 A;  4UM1 A;  4ILC A;  5CO5 A;  5HEU A;  4UXU A;  3TLW A;  1UX2 A;  3U8K A;  3ZDH A;  4QAB A;  4ZJT A;  3UU6 A;  4ZZC A;  4X5T A;  3PMZ A;  2BYS A;  4FRR A;  3U8L A;  5KZU A;  2BR7 A;  2XQ5 A;  2XQ9 A;  3WTL A;  4AFT A;  3JAF A;  5HEO A;  5AFL A;  2BG9 E;  2XQ8 A;  5LG3 A;  2BYQ A;  4ZR6 A;  4DBM A;  2XYS A;  5J0Z A;  2BJ0 A;  3WTH A;  3UU5 A;  4IL9 A;  4QH5 A;  2WNJ A;  4ILA A;  4LML A;  2BG9 B;  4HFC A;  2WN9 A;  2YOE A;  4EZ1 A;  4UM3 S;  4BFQ A;  5AIN A;  3UUB A;  4NPP A;  4PIR A;  5HEG A;  5L4H A;  3SH1 A;  1I9B A;  2W8F A;  3EHZ A;  2BG9 A;  2XQ7 A;  3UU3 A;  4Z90 A;  3SQ9 A;  4ZRU A;  4QH1 A;  4TWH A;  2C9T A;  2Y57 A;  2YMD A;  2X00 D;  5HCM A;  3UU4 A;  2Y58 A;  2YKS A;  2BYN A;  5BW2 A;  4HFE A;  3SQ6 A;  4HFD A;  3WTM A;  3U8J A;  5SYO A;  4UM3 A;  2BG9 C;  2XNT A;  2ZJV A;  3U8M A;  5AFN A;  3T4M A;  4AFG A;  3EAM A;  2X00 A;  2XQA A;  3LSV A;  3U8N A;  5J5G A;  4ZZB A;  4HFB A;  2XYT A; 
#chains in the Genus database with same CATH homology
 5AFJ A;  2XZ5 A;  3PEO A;  3WTN A;  2BR8 A;  2XNU A;  4QAA A;  3JAE A;  2QC1 B;  3TLV A;  2BYR A;  3RQU A;  4XHE A;  3P50 A;  4ALX A;  5BP0 A;  4ILB A;  4XK9 A;  4ZK4 A;  3RQW A;  4COF A;  3WTI A;  5CFB A;  2PGZ A;  3C79 A;  3C84 A;  1UV6 A;  5HCJ A;  3WTO A;  3TLT A;  3WTK A;  4ZK1 A;  2Y54 A;  3JAD A;  5AFH A;  4HFH A;  1UW6 A;  4WV9 A;  4NZB A;  3UQ7 A;  3WIP A;  3IGQ A;  2WNC A;  2XQ3 A;  2Y56 A;  2YN6 A;  5L47 A;  2Y7Y A;  4A98 A;  5FJV A;  4TWF A;  5TVC A;  3ZKR A;  2WZY A;  4TNW A;  5BRX A;  5KE4 A;  5AFM B;  5LXB A;  2W8G A;  4UY2 A;  4QH4 A;  4ZJS A;  2XNV A;  4TNV A;  4F8H A;  3RHW A;  5HEJ A;  5J5I A;  3P4W A;  3TLS A;  2UZ6 A;  2ZJU A;  4A97 A;  4Z91 A;  5AFK A;  3RI5 A;  4AFH A;  3SIO A;  5AFM A;  4HQP A;  5J5H A;  3EI0 A;  4QAC A;  3TLU A;  3UU8 A;  2YME A;  4UM3 P;  3RIA A;  4LMK A;  3WTJ A;  5HEH A;  4BQT A;  3RIF A;  4IL4 A;  2XZ6 A;  3GUA A;  5L4E A;  2BYP A;  4LMJ A;  2WNL A;  2PH9 A;  4B5D A;  4IRE A;  5JME A;  2VL0 A;  2XQ6 A;  2XQ4 A;  4TWD A;  4D01 A;  5IUX A;  5J5F A;  4HFI A;  3ZDG A;  3UQ4 A;  4UM1 A;  4ILC A;  5CO5 A;  5HEU A;  4UXU A;  3TLW A;  1UX2 A;  3U8K A;  3ZDH A;  4QAB A;  4ZJT A;  3UU6 A;  4ZZC A;  4X5T A;  3PMZ A;  2BYS A;  4FRR A;  3U8L A;  5KZU A;  2BR7 A;  2XQ5 A;  2XQ9 A;  3WTL A;  4AFT A;  3JAF A;  5HEO A;  5AFL A;  2BG9 E;  2XQ8 A;  5LG3 A;  2BYQ A;  4ZR6 A;  4DBM A;  2XYS A;  5J0Z A;  2BJ0 A;  3WTH A;  3UU5 A;  4IL9 A;  4QH5 A;  2WNJ A;  4ILA A;  4LML A;  2BG9 B;  4HFC A;  2WN9 A;  2YOE A;  4EZ1 A;  4UM3 S;  4BFQ A;  5AIN A;  3UUB A;  4NPP A;  4PIR A;  5HEG A;  5L4H A;  3SH1 A;  1I9B A;  2W8F A;  3EHZ A;  2BG9 A;  2XQ7 A;  3UU3 A;  4Z90 A;  3SQ9 A;  4ZRU A;  4QH1 A;  4TWH A;  2C9T A;  2Y57 A;  2YMD A;  2X00 D;  5HCM A;  3UU4 A;  2Y58 A;  2YKS A;  2BYN A;  5BW2 A;  4HFE A;  3SQ6 A;  4HFD A;  3WTM A;  3U8J A;  5SYO A;  4UM3 A;  2BG9 C;  2XNT A;  2ZJV A;  3U8M A;  5AFN A;  3T4M A;  4AFG A;  3EAM A;  2X00 A;  2XQA A;  3LSV A;  3U8N A;  5J5G A;  4ZZB A;  4HFB A;  2XYT A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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