3U8NA

Crystal structure of the acetylcholine binding protein (achbp) from lymnaea stagnalis in complex with ns3950 (1-(6-bromo-5-ethoxypyridin-3-yl)-1,4-diazepane)
Total Genus 49
2040608010012014016018020001020304050
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
49
sequence length
205
structure length
202
Chain Sequence
LDRADILYNIRQTSRPDVIPTQRDRPVAVSVSLKFINILEVNEITNEVDVVFWQQTTWSDRTLAWNSSHSPDQVSVPISSLWVPDLAAYNAISKPEVLTPQLARVVSDGEVLYMPSIRQRFSCDVSGVDTESGATCRIKIGSWTHHSREISVDPTTDDSEYFSQYSRFEILDVTQKKNSVTYSCCPEAYEDVEVSLNFRKKG

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
O1 (19-21)TIV1 (21-24)S1 (27-42)TI8 (146-149)TI10 (160-163)TI12 (166-169)S8 (116-122)TIV2 (42-45)TII2 (125-128)O3 (123-136)TI2 (43-46)S2 (47-59)EMPTYTII1 (67-70)TI4 (106-109)3H2 (78-80)S3 (73-77)O2 (100-102)S9 (134-142)S4 (86-88)TI3 (88-91)S5 (96-97)S6 (102-106)S7 (110-113)TI5 (127-130)S12 (191-203)TI6 (130-133)S11 (171-184)TI7 (142-145)S10 (150-154)TI11 (162-165)TI13 (185-188)TI1 (15-18)TI'1 (22-25)AH1 (3-13)3H1 (61-63)Updating...
connected with : NaN
molecule tags Acetylcholine-binding protein/agonist
source organism Lymnaea stagnalis
publication title Intersubunit bridge formation governs agonist efficacy at nicotinic acetylcholine alpha 4 beta 2 receptors: unique role of halogen bonding revealed.
pubmed doi rcsb
molecule keywords Acetylcholine-binding protein
total genus 49
structure length 202
sequence length 205
chains with identical sequence B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T
ec nomenclature
pdb deposition date 2011-10-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02931 Neur_chan_LBD Neurotransmitter-gated ion-channel ligand binding domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.70.170.10 Mainly Beta Distorted Sandwich Acetylcholine Binding Protein; Chain: A, Neurotransmitter-gated ion-channel ligand-binding domain 3u8nA00
2WNCA 5L4HA 2BYPA 2XNTA 3UU3A 5HEJA 5HEGA 4WV9A 4AFTA 3EI0A 4UXUA 2BG9B 3WTOA 2W8FA 4QH4A 2YOEA 5HEUA 4QACA 5LG3A 3RI5A 3TLTA 4ZRUA 3TLUA 3SH1A 3RIFA 3JAEA 5AINA 5TVCA 4QH5A 4ZJSA 5J0ZA 2BYSA 4UM1A 5BP0A 2XYTA 5J5IA 2XQ3A 4LMJA 4TWDA 2Y56A 2XNUA 2Y57A 2BG9C 4TNVA 4AFGA 4IL9A 4TWHA 2XZ5A 4XK9A 4ZJTA 3UQ7A 2Y7YA 4QABA 4TNWA 5KE4A 3UUBA 4UM3S 4ALXA 4IL4A 4HFEA 3RQWA 4UY2A 3U8LA 3ZDGA 4B5DA 5LXBA 5SYOA 2BR8A 2XQ5A 3GUAA 2W8GA 3WTIA 2BG9E 1UV6A 3PMZA 4LMLA 4AFHA 3UU4A 3WTJA 1UX2A 2WNLA 3TLVA 2WN9A 5KZUA 2XQAA 4F8HA 5HCMA 2YMDA 4QAAA 4A97A 2Y54A 5AFKA 2QC1B 2X00D 4D01A 3U8KA 5AFLA 4HFIA 2WZYA 3ZKRA 4ZK1A 5L4EA 5AFNA 2ZJUA 2VL0A 5AFMA 2C9TA 2WNJA 2BYQA 2YN6A 3LSVA 4HQPA 5HEHA 3RHWA 3UQ4A 5CFBA 4NPPA 2BYRA 4HFBA 2XNVA 2XQ4A 4PIRA 3JADA 3WIPA 3IGQA 3WTHA 4ZR6A 4UM3P 5J5GA 5HCJA 3RIAA 2X00A 4EZ1A 5AFJA 3U8MA 4ZZBA 4ILAA 4Z90A 5AFHA 3WTNA 3SQ9A 2PGZA 3U8NA 3WTMA 5L47A 3WTLA 1I9BA 3P4WA 4FRRA 3P50A 4HFDA 5BRXA 5IUXA 2YKSA 2XYSA 3TLWA 2BR7A 3RQUA 5HEOA 4Z91A 4ZZCA 4BQTA 4QH1A 3UU6A 2PH9A 5BW2A 2XZ6A 3PEOA 4A98A 2ZJVA 2BJ0A 2XQ7A 2UZ6A 4HFCA 3C79A 4TWFA 2Y58A 4LMKA 4XHEA 5CO5A 3UU5A 5AFMB 4HFHA 3TLSA 3SQ6A 3UU8A 3SIOA 3U8JA 4COFA 5JMEA 4NZBA 2YMEA 3EHZA 2XQ9A 1UW6A 3JAFA 4ILCA 3EAMA 3ZDHA 4UM3A 4IREA 4ZK4A 3C84A 5J5HA 2XQ6A 4ILBA 4BFQA 2BG9A 5FJVA 2BYNA 3T4MA 3WTKA 2XQ8A 4X5TA 4DBMA 5J5FA
chains in the Genus database with same CATH superfamily
2WNCA 5L4HA 2BYPA 2XNTA 3UU3A 5HEJA 5HEGA 4WV9A 4AFTA 3EI0A 4UXUA 2BG9B 3WTOA 2W8FA 4QH4A 2YOEA 5HEUA 4QACA 5LG3A 3RI5A 3TLTA 4ZRUA 3TLUA 3SH1A 3RIFA 3JAEA 5AINA 5TVCA 4QH5A 4ZJSA 5J0ZA 2BYSA 4UM1A 5BP0A 2XYTA 5J5IA 2XQ3A 4LMJA 4TWDA 2Y56A 2XNUA 2Y57A 2BG9C 4TNVA 4AFGA 4IL9A 4TWHA 2XZ5A 4XK9A 4ZJTA 3UQ7A 2Y7YA 4QABA 4TNWA 5KE4A 3UUBA 4UM3S 4ALXA 4IL4A 4HFEA 3RQWA 4UY2A 3U8LA 3ZDGA 4B5DA 5LXBA 5SYOA 2BR8A 2XQ5A 3GUAA 2W8GA 3WTIA 2BG9E 1UV6A 3PMZA 4LMLA 4AFHA 3UU4A 3WTJA 1UX2A 2WNLA 3TLVA 2WN9A 5KZUA 2XQAA 4F8HA 5HCMA 2YMDA 4QAAA 4A97A 2Y54A 5AFKA 2QC1B 2X00D 4D01A 3U8KA 5AFLA 4HFIA 2WZYA 3ZKRA 4ZK1A 5L4EA 5AFNA 2ZJUA 2VL0A 5AFMA 2C9TA 2WNJA 2BYQA 2YN6A 3LSVA 4HQPA 5HEHA 3RHWA 3UQ4A 5CFBA 4NPPA 2BYRA 4HFBA 2XNVA 2XQ4A 4PIRA 3JADA 3WIPA 3IGQA 3WTHA 4ZR6A 4UM3P 5J5GA 5HCJA 3RIAA 2X00A 4EZ1A 5AFJA 3U8MA 4ZZBA 4ILAA 4Z90A 5AFHA 3WTNA 3SQ9A 2PGZA 3U8NA 3WTMA 5L47A 3WTLA 1I9BA 3P4WA 4FRRA 3P50A 4HFDA 5BRXA 5IUXA 2YKSA 2XYSA 3TLWA 2BR7A 3RQUA 5HEOA 4Z91A 4ZZCA 4BQTA 4QH1A 3UU6A 2PH9A 5BW2A 2XZ6A 3PEOA 4A98A 2ZJVA 2BJ0A 2XQ7A 2UZ6A 4HFCA 3C79A 4TWFA 2Y58A 4LMKA 4XHEA 5CO5A 3UU5A 5AFMB 4HFHA 3TLSA 3SQ6A 3UU8A 3SIOA 3U8JA 4COFA 5JMEA 4NZBA 2YMEA 3EHZA 2XQ9A 1UW6A 3JAFA 4ILCA 3EAMA 3ZDHA 4UM3A 4IREA 4ZK4A 3C84A 5J5HA 2XQ6A 4ILBA 4BFQA 2BG9A 5FJVA 2BYNA 3T4MA 3WTKA 2XQ8A 4X5TA 4DBMA 5J5FA
chains in the Genus database with same CATH topology
2WNCA 5L4HA 2BYPA 2XNTA 3UU3A 5HEJA 5HEGA 4WV9A 4AFTA 3EI0A 4UXUA 2BG9B 3WTOA 2W8FA 4QH4A 2YOEA 5HEUA 4QACA 5LG3A 3RI5A 3TLTA 4ZRUA 3TLUA 3SH1A 3RIFA 3JAEA 5AINA 5TVCA 4QH5A 4ZJSA 5J0ZA 2BYSA 4UM1A 5BP0A 2XYTA 5J5IA 2XQ3A 4LMJA 4TWDA 2Y56A 2XNUA 2Y57A 2BG9C 4TNVA 4AFGA 4IL9A 4TWHA 2XZ5A 4XK9A 4ZJTA 3UQ7A 2Y7YA 4QABA 4TNWA 5KE4A 3UUBA 4UM3S 4ALXA 4IL4A 4HFEA 3RQWA 4UY2A 3U8LA 3ZDGA 4B5DA 5LXBA 5SYOA 2BR8A 2XQ5A 3GUAA 2W8GA 3WTIA 2BG9E 1UV6A 3PMZA 4LMLA 4AFHA 3UU4A 3WTJA 1UX2A 2WNLA 3TLVA 2WN9A 5KZUA 2XQAA 4F8HA 5HCMA 2YMDA 4QAAA 4A97A 2Y54A 5AFKA 2QC1B 2X00D 4D01A 3U8KA 5AFLA 4HFIA 2WZYA 3ZKRA 4ZK1A 5L4EA 5AFNA 2ZJUA 2VL0A 5AFMA 2C9TA 2WNJA 2BYQA 2YN6A 3LSVA 4HQPA 5HEHA 3RHWA 3UQ4A 5CFBA 4NPPA 2BYRA 4HFBA 2XNVA 2XQ4A 4PIRA 3JADA 3WIPA 3IGQA 3WTHA 4ZR6A 4UM3P 5J5GA 5HCJA 3RIAA 2X00A 4EZ1A 5AFJA 3U8MA 4ZZBA 4ILAA 4Z90A 5AFHA 3WTNA 3SQ9A 2PGZA 3U8NA 3WTMA 5L47A 3WTLA 1I9BA 3P4WA 4FRRA 3P50A 4HFDA 5BRXA 5IUXA 2YKSA 2XYSA 3TLWA 2BR7A 3RQUA 5HEOA 4Z91A 4ZZCA 4BQTA 4QH1A 3UU6A 2PH9A 5BW2A 2XZ6A 3PEOA 4A98A 2ZJVA 2BJ0A 2XQ7A 2UZ6A 4HFCA 3C79A 4TWFA 2Y58A 4LMKA 4XHEA 5CO5A 3UU5A 5AFMB 4HFHA 3TLSA 3SQ6A 3UU8A 3SIOA 3U8JA 4COFA 5JMEA 4NZBA 2YMEA 3EHZA 2XQ9A 1UW6A 3JAFA 4ILCA 3EAMA 3ZDHA 4UM3A 4IREA 4ZK4A 3C84A 5J5HA 2XQ6A 4ILBA 4BFQA 2BG9A 5FJVA 2BYNA 3T4MA 3WTKA 2XQ8A 4X5TA 4DBMA 5J5FA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2WNC A;  5L4H A;  2BYP A;  2XNT A;  3UU3 A;  5HEJ A;  5HEG A;  4WV9 A;  4AFT A;  3EI0 A;  4UXU A;  2BG9 B;  3WTO A;  2W8F A;  4QH4 A;  2YOE A;  5HEU A;  4QAC A;  5LG3 A;  3RI5 A;  3TLT A;  4ZRU A;  3TLU A;  3SH1 A;  3RIF A;  3JAE A;  5AIN A;  5TVC A;  4QH5 A;  4ZJS A;  5J0Z A;  2BYS A;  4UM1 A;  5BP0 A;  2XYT A;  5J5I A;  2XQ3 A;  4LMJ A;  4TWD A;  2Y56 A;  2XNU A;  2Y57 A;  2BG9 C;  4TNV A;  4AFG A;  4IL9 A;  4TWH A;  2XZ5 A;  4XK9 A;  4ZJT A;  3UQ7 A;  2Y7Y A;  4QAB A;  4TNW A;  5KE4 A;  3UUB A;  4UM3 S;  4ALX A;  4IL4 A;  4HFE A;  3RQW A;  4UY2 A;  3U8L A;  3ZDG A;  4B5D A;  5LXB A;  5SYO A;  2BR8 A;  2XQ5 A;  3GUA A;  2W8G A;  3WTI A;  2BG9 E;  1UV6 A;  3PMZ A;  4LML A;  4AFH A;  3UU4 A;  3WTJ A;  1UX2 A;  2WNL A;  3TLV A;  2WN9 A;  5KZU A;  2XQA A;  4F8H A;  5HCM A;  2YMD A;  4QAA A;  4A97 A;  2Y54 A;  5AFK A;  2QC1 B;  2X00 D;  4D01 A;  3U8K A;  5AFL A;  4HFI A;  2WZY A;  3ZKR A;  4ZK1 A;  5L4E A;  5AFN A;  2ZJU A;  2VL0 A;  5AFM A;  2C9T A;  2WNJ A;  2BYQ A;  2YN6 A;  3LSV A;  4HQP A;  5HEH A;  3RHW A;  3UQ4 A;  5CFB A;  4NPP A;  2BYR A;  4HFB A;  2XNV A;  2XQ4 A;  4PIR A;  3JAD A;  3WIP A;  3IGQ A;  3WTH A;  4ZR6 A;  4UM3 P;  5J5G A;  5HCJ A;  3RIA A;  2X00 A;  4EZ1 A;  5AFJ A;  3U8M A;  4ZZB A;  4ILA A;  4Z90 A;  5AFH A;  3WTN A;  3SQ9 A;  2PGZ A;  3U8N A;  3WTM A;  5L47 A;  3WTL A;  1I9B A;  3P4W A;  4FRR A;  3P50 A;  4HFD A;  5BRX A;  5IUX A;  2YKS A;  2XYS A;  3TLW A;  2BR7 A;  3RQU A;  5HEO A;  4Z91 A;  4ZZC A;  4BQT A;  4QH1 A;  3UU6 A;  2PH9 A;  5BW2 A;  2XZ6 A;  3PEO A;  4A98 A;  2ZJV A;  2BJ0 A;  2XQ7 A;  2UZ6 A;  4HFC A;  3C79 A;  4TWF A;  2Y58 A;  4LMK A;  4XHE A;  5CO5 A;  3UU5 A;  5AFM B;  4HFH A;  3TLS A;  3SQ6 A;  3UU8 A;  3SIO A;  3U8J A;  4COF A;  5JME A;  4NZB A;  2YME A;  3EHZ A;  2XQ9 A;  1UW6 A;  3JAF A;  4ILC A;  3EAM A;  3ZDH A;  4UM3 A;  4IRE A;  4ZK4 A;  3C84 A;  5J5H A;  2XQ6 A;  4ILB A;  4BFQ A;  2BG9 A;  5FJV A;  2BYN A;  3T4M A;  3WTK A;  2XQ8 A;  4X5T A;  4DBM A;  5J5F A; 
#chains in the Genus database with same CATH topology
 2WNC A;  5L4H A;  2BYP A;  2XNT A;  3UU3 A;  5HEJ A;  5HEG A;  4WV9 A;  4AFT A;  3EI0 A;  4UXU A;  2BG9 B;  3WTO A;  2W8F A;  4QH4 A;  2YOE A;  5HEU A;  4QAC A;  5LG3 A;  3RI5 A;  3TLT A;  4ZRU A;  3TLU A;  3SH1 A;  3RIF A;  3JAE A;  5AIN A;  5TVC A;  4QH5 A;  4ZJS A;  5J0Z A;  2BYS A;  4UM1 A;  5BP0 A;  2XYT A;  5J5I A;  2XQ3 A;  4LMJ A;  4TWD A;  2Y56 A;  2XNU A;  2Y57 A;  2BG9 C;  4TNV A;  4AFG A;  4IL9 A;  4TWH A;  2XZ5 A;  4XK9 A;  4ZJT A;  3UQ7 A;  2Y7Y A;  4QAB A;  4TNW A;  5KE4 A;  3UUB A;  4UM3 S;  4ALX A;  4IL4 A;  4HFE A;  3RQW A;  4UY2 A;  3U8L A;  3ZDG A;  4B5D A;  5LXB A;  5SYO A;  2BR8 A;  2XQ5 A;  3GUA A;  2W8G A;  3WTI A;  2BG9 E;  1UV6 A;  3PMZ A;  4LML A;  4AFH A;  3UU4 A;  3WTJ A;  1UX2 A;  2WNL A;  3TLV A;  2WN9 A;  5KZU A;  2XQA A;  4F8H A;  5HCM A;  2YMD A;  4QAA A;  4A97 A;  2Y54 A;  5AFK A;  2QC1 B;  2X00 D;  4D01 A;  3U8K A;  5AFL A;  4HFI A;  2WZY A;  3ZKR A;  4ZK1 A;  5L4E A;  5AFN A;  2ZJU A;  2VL0 A;  5AFM A;  2C9T A;  2WNJ A;  2BYQ A;  2YN6 A;  3LSV A;  4HQP A;  5HEH A;  3RHW A;  3UQ4 A;  5CFB A;  4NPP A;  2BYR A;  4HFB A;  2XNV A;  2XQ4 A;  4PIR A;  3JAD A;  3WIP A;  3IGQ A;  3WTH A;  4ZR6 A;  4UM3 P;  5J5G A;  5HCJ A;  3RIA A;  2X00 A;  4EZ1 A;  5AFJ A;  3U8M A;  4ZZB A;  4ILA A;  4Z90 A;  5AFH A;  3WTN A;  3SQ9 A;  2PGZ A;  3U8N A;  3WTM A;  5L47 A;  3WTL A;  1I9B A;  3P4W A;  4FRR A;  3P50 A;  4HFD A;  5BRX A;  5IUX A;  2YKS A;  2XYS A;  3TLW A;  2BR7 A;  3RQU A;  5HEO A;  4Z91 A;  4ZZC A;  4BQT A;  4QH1 A;  3UU6 A;  2PH9 A;  5BW2 A;  2XZ6 A;  3PEO A;  4A98 A;  2ZJV A;  2BJ0 A;  2XQ7 A;  2UZ6 A;  4HFC A;  3C79 A;  4TWF A;  2Y58 A;  4LMK A;  4XHE A;  5CO5 A;  3UU5 A;  5AFM B;  4HFH A;  3TLS A;  3SQ6 A;  3UU8 A;  3SIO A;  3U8J A;  4COF A;  5JME A;  4NZB A;  2YME A;  3EHZ A;  2XQ9 A;  1UW6 A;  3JAF A;  4ILC A;  3EAM A;  3ZDH A;  4UM3 A;  4IRE A;  4ZK4 A;  3C84 A;  5J5H A;  2XQ6 A;  4ILB A;  4BFQ A;  2BG9 A;  5FJV A;  2BYN A;  3T4M A;  3WTK A;  2XQ8 A;  4X5T A;  4DBM A;  5J5F A; 
#chains in the Genus database with same CATH homology
 2WNC A;  5L4H A;  2BYP A;  2XNT A;  3UU3 A;  5HEJ A;  5HEG A;  4WV9 A;  4AFT A;  3EI0 A;  4UXU A;  2BG9 B;  3WTO A;  2W8F A;  4QH4 A;  2YOE A;  5HEU A;  4QAC A;  5LG3 A;  3RI5 A;  3TLT A;  4ZRU A;  3TLU A;  3SH1 A;  3RIF A;  3JAE A;  5AIN A;  5TVC A;  4QH5 A;  4ZJS A;  5J0Z A;  2BYS A;  4UM1 A;  5BP0 A;  2XYT A;  5J5I A;  2XQ3 A;  4LMJ A;  4TWD A;  2Y56 A;  2XNU A;  2Y57 A;  2BG9 C;  4TNV A;  4AFG A;  4IL9 A;  4TWH A;  2XZ5 A;  4XK9 A;  4ZJT A;  3UQ7 A;  2Y7Y A;  4QAB A;  4TNW A;  5KE4 A;  3UUB A;  4UM3 S;  4ALX A;  4IL4 A;  4HFE A;  3RQW A;  4UY2 A;  3U8L A;  3ZDG A;  4B5D A;  5LXB A;  5SYO A;  2BR8 A;  2XQ5 A;  3GUA A;  2W8G A;  3WTI A;  2BG9 E;  1UV6 A;  3PMZ A;  4LML A;  4AFH A;  3UU4 A;  3WTJ A;  1UX2 A;  2WNL A;  3TLV A;  2WN9 A;  5KZU A;  2XQA A;  4F8H A;  5HCM A;  2YMD A;  4QAA A;  4A97 A;  2Y54 A;  5AFK A;  2QC1 B;  2X00 D;  4D01 A;  3U8K A;  5AFL A;  4HFI A;  2WZY A;  3ZKR A;  4ZK1 A;  5L4E A;  5AFN A;  2ZJU A;  2VL0 A;  5AFM A;  2C9T A;  2WNJ A;  2BYQ A;  2YN6 A;  3LSV A;  4HQP A;  5HEH A;  3RHW A;  3UQ4 A;  5CFB A;  4NPP A;  2BYR A;  4HFB A;  2XNV A;  2XQ4 A;  4PIR A;  3JAD A;  3WIP A;  3IGQ A;  3WTH A;  4ZR6 A;  4UM3 P;  5J5G A;  5HCJ A;  3RIA A;  2X00 A;  4EZ1 A;  5AFJ A;  3U8M A;  4ZZB A;  4ILA A;  4Z90 A;  5AFH A;  3WTN A;  3SQ9 A;  2PGZ A;  3U8N A;  3WTM A;  5L47 A;  3WTL A;  1I9B A;  3P4W A;  4FRR A;  3P50 A;  4HFD A;  5BRX A;  5IUX A;  2YKS A;  2XYS A;  3TLW A;  2BR7 A;  3RQU A;  5HEO A;  4Z91 A;  4ZZC A;  4BQT A;  4QH1 A;  3UU6 A;  2PH9 A;  5BW2 A;  2XZ6 A;  3PEO A;  4A98 A;  2ZJV A;  2BJ0 A;  2XQ7 A;  2UZ6 A;  4HFC A;  3C79 A;  4TWF A;  2Y58 A;  4LMK A;  4XHE A;  5CO5 A;  3UU5 A;  5AFM B;  4HFH A;  3TLS A;  3SQ6 A;  3UU8 A;  3SIO A;  3U8J A;  4COF A;  5JME A;  4NZB A;  2YME A;  3EHZ A;  2XQ9 A;  1UW6 A;  3JAF A;  4ILC A;  3EAM A;  3ZDH A;  4UM3 A;  4IRE A;  4ZK4 A;  3C84 A;  5J5H A;  2XQ6 A;  4ILB A;  4BFQ A;  2BG9 A;  5FJV A;  2BYN A;  3T4M A;  3WTK A;  2XQ8 A;  4X5T A;  4DBM A;  5J5F A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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