4AFHA

Capitella teleta achbp in complex with lobeline
Total Genus 47
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
47
sequence length
213
structure length
213
Chain Sequence
SNGLMAKRLRRELLNTYEQLGKSGLPFLDDIGKVDVKFGLSLQLLKSIEQRGMGFNSIGTFKAIVKLSWVDTILRWDPEPPFDFQKIEISPDEIWTPDIKLFNSVDLDMTLDRTTQAIVFSNGTVLWIPPAVLKVLCVSQDDVDSCHFQFGSWVYSVDEVDIHFMDDKAEVLLDFYQDSLEILENSAQRQEVVYPCCESAYVEMKYLLALRSE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Acetylcholine-binding protein
source organism Capitella teleta
publication title Molecular Actions of Smoking Cessation Drugs at Alpha4Beta2 Nicotinic Receptors Defined in Crystal Structures of a Homologous Binding Protein.
pubmed doi rcsb
molecule keywords ACHBP
total genus 47
structure length 213
sequence length 213
chains with identical sequence B, C, D, E
ec nomenclature
pdb deposition date 2012-01-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02931 Neur_chan_LBD Neurotransmitter-gated ion-channel ligand binding domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.70.170.10 Mainly Beta Distorted Sandwich Acetylcholine Binding Protein; Chain: A, Neurotransmitter-gated ion-channel ligand-binding domain 4afhA00
4ILCA 3TLVA 2BYSA 3JAFA 4BQTA 4HFIA 4XK9A 2XQ8A 4DBMA 4NZBA 5AINA 2W8FA 3SIOA 2BJ0A 2VL0A 5JMEA 2ZJUA 4PIRA 4QH5A 3U8NA 2PGZA 2YKSA 3WTLA 4ALXA 2XQ6A 3EHZA 4LMJA 4TWHA 4UM1A 2Y7YA 2XQAA 5HEUA 3WTMA 4Z90A 3U8LA 5J5FA 5HCJA 2BG9B 2ZJVA 3U8MA 3SQ6A 3EI0A 2UZ6A 4ILAA 1UX2A 2PH9A 2Y58A 2X00D 4HFHA 5J5HA 5CFBA 3WTJA 2YMEA 2C9TA 2YN6A 3TLTA 4ILBA 2BYRA 4AFHA 2Y57A 2YOEA 2BYNA 3TLSA 3UUBA 5LG3A 4QAAA 2X00A 2XQ4A 2YMDA 3SQ9A 5AFNA 4ZJTA 3C84A 3WTKA 2BG9A 2XZ6A 2BG9C 3PEOA 4IREA 4LMKA 4ZK4A 4ZJSA 5AFJA 5AFHA 4UXUA 3UQ7A 5CO5A 4WV9A 2BR8A 4UM3P 3RQUA 3UQ4A 4UY2A 5HEHA 4IL4A 3RQWA 4D01A 4ZK1A 5HEOA 3ZKRA 2Y56A 1UV6A 3PMZA 2XQ3A 3U8JA 5L4HA 4A97A 4UM3S 2W8GA 4Z91A 2XZ5A 5BP0A 5FJVA 3RIFA 2XQ9A 4AFGA 4QH4A 2QC1B 3TLUA 3RIAA 5BW2A 5HEGA 5J5IA 3UU3A 3ZDHA 3U8KA 5HCMA 3WTNA 5LXBA 5J0ZA 1UW6A 4BFQA 3UU5A 5AFKA 2XQ5A 2XQ7A 4FRRA 4XHEA 3WTIA 5KE4A 3ZDGA 4TNWA 5J5GA 4QACA 3T4MA 4B5DA 2BYPA 4QH1A 3WTHA 4HFEA 4NPPA 4ZZBA 4ZRUA 5BRXA 2XYTA 3IGQA 3UU4A 2BYQA 1I9BA 4HQPA 4EZ1A 4AFTA 3TLWA 3EAMA 4TWDA 2BG9E 2XNUA 4COFA 5TVCA 2XYSA 3UU8A 3WIPA 5AFLA 4QABA 5IUXA 5L4EA 3P50A 5AFMB 2Y54A 5HEJA 2XNVA 4HFBA 3WTOA 4LMLA 3LSVA 2WZYA 4X5TA 3JAEA 4F8HA 5L47A 3P4WA 5SYOA 4A98A 4ZZCA 2BR7A 3GUAA 3UU6A 4TWFA 4TNVA 2XNTA 3RI5A 5KZUA 2WNJA 4HFDA 4UM3A 3SH1A 4ZR6A 5AFMA 4HFCA 3JADA 3C79A 3RHWA 2WNCA 4IL9A 2WN9A 2WNLA
chains in the Genus database with same CATH superfamily
4ILCA 3TLVA 2BYSA 3JAFA 4BQTA 4HFIA 4XK9A 2XQ8A 4DBMA 4NZBA 5AINA 2W8FA 3SIOA 2BJ0A 2VL0A 5JMEA 2ZJUA 4PIRA 4QH5A 3U8NA 2PGZA 2YKSA 3WTLA 4ALXA 2XQ6A 3EHZA 4LMJA 4TWHA 4UM1A 2Y7YA 2XQAA 5HEUA 3WTMA 4Z90A 3U8LA 5J5FA 5HCJA 2BG9B 2ZJVA 3U8MA 3SQ6A 3EI0A 2UZ6A 4ILAA 1UX2A 2PH9A 2Y58A 2X00D 4HFHA 5J5HA 5CFBA 3WTJA 2YMEA 2C9TA 2YN6A 3TLTA 4ILBA 2BYRA 4AFHA 2Y57A 2YOEA 2BYNA 3TLSA 3UUBA 5LG3A 4QAAA 2X00A 2XQ4A 2YMDA 3SQ9A 5AFNA 4ZJTA 3C84A 3WTKA 2BG9A 2XZ6A 2BG9C 3PEOA 4IREA 4LMKA 4ZK4A 4ZJSA 5AFJA 5AFHA 4UXUA 3UQ7A 5CO5A 4WV9A 2BR8A 4UM3P 3RQUA 3UQ4A 4UY2A 5HEHA 4IL4A 3RQWA 4D01A 4ZK1A 5HEOA 3ZKRA 2Y56A 1UV6A 3PMZA 2XQ3A 3U8JA 5L4HA 4A97A 4UM3S 2W8GA 4Z91A 2XZ5A 5BP0A 5FJVA 3RIFA 2XQ9A 4AFGA 4QH4A 2QC1B 3TLUA 3RIAA 5BW2A 5HEGA 5J5IA 3UU3A 3ZDHA 3U8KA 5HCMA 3WTNA 5LXBA 5J0ZA 1UW6A 4BFQA 3UU5A 5AFKA 2XQ5A 2XQ7A 4FRRA 4XHEA 3WTIA 5KE4A 3ZDGA 4TNWA 5J5GA 4QACA 3T4MA 4B5DA 2BYPA 4QH1A 3WTHA 4HFEA 4NPPA 4ZZBA 4ZRUA 5BRXA 2XYTA 3IGQA 3UU4A 2BYQA 1I9BA 4HQPA 4EZ1A 4AFTA 3TLWA 3EAMA 4TWDA 2BG9E 2XNUA 4COFA 5TVCA 2XYSA 3UU8A 3WIPA 5AFLA 4QABA 5IUXA 5L4EA 3P50A 5AFMB 2Y54A 5HEJA 2XNVA 4HFBA 3WTOA 4LMLA 3LSVA 2WZYA 4X5TA 3JAEA 4F8HA 5L47A 3P4WA 5SYOA 4A98A 4ZZCA 2BR7A 3GUAA 3UU6A 4TWFA 4TNVA 2XNTA 3RI5A 5KZUA 2WNJA 4HFDA 4UM3A 3SH1A 4ZR6A 5AFMA 4HFCA 3JADA 3C79A 3RHWA 2WNCA 4IL9A 2WN9A 2WNLA
chains in the Genus database with same CATH topology
4ILCA 3TLVA 2BYSA 3JAFA 4BQTA 4HFIA 4XK9A 2XQ8A 4DBMA 4NZBA 5AINA 2W8FA 3SIOA 2BJ0A 2VL0A 5JMEA 2ZJUA 4PIRA 4QH5A 3U8NA 2PGZA 2YKSA 3WTLA 4ALXA 2XQ6A 3EHZA 4LMJA 4TWHA 4UM1A 2Y7YA 2XQAA 5HEUA 3WTMA 4Z90A 3U8LA 5J5FA 5HCJA 2BG9B 2ZJVA 3U8MA 3SQ6A 3EI0A 2UZ6A 4ILAA 1UX2A 2PH9A 2Y58A 2X00D 4HFHA 5J5HA 5CFBA 3WTJA 2YMEA 2C9TA 2YN6A 3TLTA 4ILBA 2BYRA 4AFHA 2Y57A 2YOEA 2BYNA 3TLSA 3UUBA 5LG3A 4QAAA 2X00A 2XQ4A 2YMDA 3SQ9A 5AFNA 4ZJTA 3C84A 3WTKA 2BG9A 2XZ6A 2BG9C 3PEOA 4IREA 4LMKA 4ZK4A 4ZJSA 5AFJA 5AFHA 4UXUA 3UQ7A 5CO5A 4WV9A 2BR8A 4UM3P 3RQUA 3UQ4A 4UY2A 5HEHA 4IL4A 3RQWA 4D01A 4ZK1A 5HEOA 3ZKRA 2Y56A 1UV6A 3PMZA 2XQ3A 3U8JA 5L4HA 4A97A 4UM3S 2W8GA 4Z91A 2XZ5A 5BP0A 5FJVA 3RIFA 2XQ9A 4AFGA 4QH4A 2QC1B 3TLUA 3RIAA 5BW2A 5HEGA 5J5IA 3UU3A 3ZDHA 3U8KA 5HCMA 3WTNA 5LXBA 5J0ZA 1UW6A 4BFQA 3UU5A 5AFKA 2XQ5A 2XQ7A 4FRRA 4XHEA 3WTIA 5KE4A 3ZDGA 4TNWA 5J5GA 4QACA 3T4MA 4B5DA 2BYPA 4QH1A 3WTHA 4HFEA 4NPPA 4ZZBA 4ZRUA 5BRXA 2XYTA 3IGQA 3UU4A 2BYQA 1I9BA 4HQPA 4EZ1A 4AFTA 3TLWA 3EAMA 4TWDA 2BG9E 2XNUA 4COFA 5TVCA 2XYSA 3UU8A 3WIPA 5AFLA 4QABA 5IUXA 5L4EA 3P50A 5AFMB 2Y54A 5HEJA 2XNVA 4HFBA 3WTOA 4LMLA 3LSVA 2WZYA 4X5TA 3JAEA 4F8HA 5L47A 3P4WA 5SYOA 4A98A 4ZZCA 2BR7A 3GUAA 3UU6A 4TWFA 4TNVA 2XNTA 3RI5A 5KZUA 2WNJA 4HFDA 4UM3A 3SH1A 4ZR6A 5AFMA 4HFCA 3JADA 3C79A 3RHWA 2WNCA 4IL9A 2WN9A 2WNLA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4ILC A;  3TLV A;  2BYS A;  3JAF A;  4BQT A;  4HFI A;  4XK9 A;  2XQ8 A;  4DBM A;  4NZB A;  5AIN A;  2W8F A;  3SIO A;  2BJ0 A;  2VL0 A;  5JME A;  2ZJU A;  4PIR A;  4QH5 A;  3U8N A;  2PGZ A;  2YKS A;  3WTL A;  4ALX A;  2XQ6 A;  3EHZ A;  4LMJ A;  4TWH A;  4UM1 A;  2Y7Y A;  2XQA A;  5HEU A;  3WTM A;  4Z90 A;  3U8L A;  5J5F A;  5HCJ A;  2BG9 B;  2ZJV A;  3U8M A;  3SQ6 A;  3EI0 A;  2UZ6 A;  4ILA A;  1UX2 A;  2PH9 A;  2Y58 A;  2X00 D;  4HFH A;  5J5H A;  5CFB A;  3WTJ A;  2YME A;  2C9T A;  2YN6 A;  3TLT A;  4ILB A;  2BYR A;  4AFH A;  2Y57 A;  2YOE A;  2BYN A;  3TLS A;  3UUB A;  5LG3 A;  4QAA A;  2X00 A;  2XQ4 A;  2YMD A;  3SQ9 A;  5AFN A;  4ZJT A;  3C84 A;  3WTK A;  2BG9 A;  2XZ6 A;  2BG9 C;  3PEO A;  4IRE A;  4LMK A;  4ZK4 A;  4ZJS A;  5AFJ A;  5AFH A;  4UXU A;  3UQ7 A;  5CO5 A;  4WV9 A;  2BR8 A;  4UM3 P;  3RQU A;  3UQ4 A;  4UY2 A;  5HEH A;  4IL4 A;  3RQW A;  4D01 A;  4ZK1 A;  5HEO A;  3ZKR A;  2Y56 A;  1UV6 A;  3PMZ A;  2XQ3 A;  3U8J A;  5L4H A;  4A97 A;  4UM3 S;  2W8G A;  4Z91 A;  2XZ5 A;  5BP0 A;  5FJV A;  3RIF A;  2XQ9 A;  4AFG A;  4QH4 A;  2QC1 B;  3TLU A;  3RIA A;  5BW2 A;  5HEG A;  5J5I A;  3UU3 A;  3ZDH A;  3U8K A;  5HCM A;  3WTN A;  5LXB A;  5J0Z A;  1UW6 A;  4BFQ A;  3UU5 A;  5AFK A;  2XQ5 A;  2XQ7 A;  4FRR A;  4XHE A;  3WTI A;  5KE4 A;  3ZDG A;  4TNW A;  5J5G A;  4QAC A;  3T4M A;  4B5D A;  2BYP A;  4QH1 A;  3WTH A;  4HFE A;  4NPP A;  4ZZB A;  4ZRU A;  5BRX A;  2XYT A;  3IGQ A;  3UU4 A;  2BYQ A;  1I9B A;  4HQP A;  4EZ1 A;  4AFT A;  3TLW A;  3EAM A;  4TWD A;  2BG9 E;  2XNU A;  4COF A;  5TVC A;  2XYS A;  3UU8 A;  3WIP A;  5AFL A;  4QAB A;  5IUX A;  5L4E A;  3P50 A;  5AFM B;  2Y54 A;  5HEJ A;  2XNV A;  4HFB A;  3WTO A;  4LML A;  3LSV A;  2WZY A;  4X5T A;  3JAE A;  4F8H A;  5L47 A;  3P4W A;  5SYO A;  4A98 A;  4ZZC A;  2BR7 A;  3GUA A;  3UU6 A;  4TWF A;  4TNV A;  2XNT A;  3RI5 A;  5KZU A;  2WNJ A;  4HFD A;  4UM3 A;  3SH1 A;  4ZR6 A;  5AFM A;  4HFC A;  3JAD A;  3C79 A;  3RHW A;  2WNC A;  4IL9 A;  2WN9 A;  2WNL A; 
#chains in the Genus database with same CATH topology
 4ILC A;  3TLV A;  2BYS A;  3JAF A;  4BQT A;  4HFI A;  4XK9 A;  2XQ8 A;  4DBM A;  4NZB A;  5AIN A;  2W8F A;  3SIO A;  2BJ0 A;  2VL0 A;  5JME A;  2ZJU A;  4PIR A;  4QH5 A;  3U8N A;  2PGZ A;  2YKS A;  3WTL A;  4ALX A;  2XQ6 A;  3EHZ A;  4LMJ A;  4TWH A;  4UM1 A;  2Y7Y A;  2XQA A;  5HEU A;  3WTM A;  4Z90 A;  3U8L A;  5J5F A;  5HCJ A;  2BG9 B;  2ZJV A;  3U8M A;  3SQ6 A;  3EI0 A;  2UZ6 A;  4ILA A;  1UX2 A;  2PH9 A;  2Y58 A;  2X00 D;  4HFH A;  5J5H A;  5CFB A;  3WTJ A;  2YME A;  2C9T A;  2YN6 A;  3TLT A;  4ILB A;  2BYR A;  4AFH A;  2Y57 A;  2YOE A;  2BYN A;  3TLS A;  3UUB A;  5LG3 A;  4QAA A;  2X00 A;  2XQ4 A;  2YMD A;  3SQ9 A;  5AFN A;  4ZJT A;  3C84 A;  3WTK A;  2BG9 A;  2XZ6 A;  2BG9 C;  3PEO A;  4IRE A;  4LMK A;  4ZK4 A;  4ZJS A;  5AFJ A;  5AFH A;  4UXU A;  3UQ7 A;  5CO5 A;  4WV9 A;  2BR8 A;  4UM3 P;  3RQU A;  3UQ4 A;  4UY2 A;  5HEH A;  4IL4 A;  3RQW A;  4D01 A;  4ZK1 A;  5HEO A;  3ZKR A;  2Y56 A;  1UV6 A;  3PMZ A;  2XQ3 A;  3U8J A;  5L4H A;  4A97 A;  4UM3 S;  2W8G A;  4Z91 A;  2XZ5 A;  5BP0 A;  5FJV A;  3RIF A;  2XQ9 A;  4AFG A;  4QH4 A;  2QC1 B;  3TLU A;  3RIA A;  5BW2 A;  5HEG A;  5J5I A;  3UU3 A;  3ZDH A;  3U8K A;  5HCM A;  3WTN A;  5LXB A;  5J0Z A;  1UW6 A;  4BFQ A;  3UU5 A;  5AFK A;  2XQ5 A;  2XQ7 A;  4FRR A;  4XHE A;  3WTI A;  5KE4 A;  3ZDG A;  4TNW A;  5J5G A;  4QAC A;  3T4M A;  4B5D A;  2BYP A;  4QH1 A;  3WTH A;  4HFE A;  4NPP A;  4ZZB A;  4ZRU A;  5BRX A;  2XYT A;  3IGQ A;  3UU4 A;  2BYQ A;  1I9B A;  4HQP A;  4EZ1 A;  4AFT A;  3TLW A;  3EAM A;  4TWD A;  2BG9 E;  2XNU A;  4COF A;  5TVC A;  2XYS A;  3UU8 A;  3WIP A;  5AFL A;  4QAB A;  5IUX A;  5L4E A;  3P50 A;  5AFM B;  2Y54 A;  5HEJ A;  2XNV A;  4HFB A;  3WTO A;  4LML A;  3LSV A;  2WZY A;  4X5T A;  3JAE A;  4F8H A;  5L47 A;  3P4W A;  5SYO A;  4A98 A;  4ZZC A;  2BR7 A;  3GUA A;  3UU6 A;  4TWF A;  4TNV A;  2XNT A;  3RI5 A;  5KZU A;  2WNJ A;  4HFD A;  4UM3 A;  3SH1 A;  4ZR6 A;  5AFM A;  4HFC A;  3JAD A;  3C79 A;  3RHW A;  2WNC A;  4IL9 A;  2WN9 A;  2WNL A; 
#chains in the Genus database with same CATH homology
 4ILC A;  3TLV A;  2BYS A;  3JAF A;  4BQT A;  4HFI A;  4XK9 A;  2XQ8 A;  4DBM A;  4NZB A;  5AIN A;  2W8F A;  3SIO A;  2BJ0 A;  2VL0 A;  5JME A;  2ZJU A;  4PIR A;  4QH5 A;  3U8N A;  2PGZ A;  2YKS A;  3WTL A;  4ALX A;  2XQ6 A;  3EHZ A;  4LMJ A;  4TWH A;  4UM1 A;  2Y7Y A;  2XQA A;  5HEU A;  3WTM A;  4Z90 A;  3U8L A;  5J5F A;  5HCJ A;  2BG9 B;  2ZJV A;  3U8M A;  3SQ6 A;  3EI0 A;  2UZ6 A;  4ILA A;  1UX2 A;  2PH9 A;  2Y58 A;  2X00 D;  4HFH A;  5J5H A;  5CFB A;  3WTJ A;  2YME A;  2C9T A;  2YN6 A;  3TLT A;  4ILB A;  2BYR A;  4AFH A;  2Y57 A;  2YOE A;  2BYN A;  3TLS A;  3UUB A;  5LG3 A;  4QAA A;  2X00 A;  2XQ4 A;  2YMD A;  3SQ9 A;  5AFN A;  4ZJT A;  3C84 A;  3WTK A;  2BG9 A;  2XZ6 A;  2BG9 C;  3PEO A;  4IRE A;  4LMK A;  4ZK4 A;  4ZJS A;  5AFJ A;  5AFH A;  4UXU A;  3UQ7 A;  5CO5 A;  4WV9 A;  2BR8 A;  4UM3 P;  3RQU A;  3UQ4 A;  4UY2 A;  5HEH A;  4IL4 A;  3RQW A;  4D01 A;  4ZK1 A;  5HEO A;  3ZKR A;  2Y56 A;  1UV6 A;  3PMZ A;  2XQ3 A;  3U8J A;  5L4H A;  4A97 A;  4UM3 S;  2W8G A;  4Z91 A;  2XZ5 A;  5BP0 A;  5FJV A;  3RIF A;  2XQ9 A;  4AFG A;  4QH4 A;  2QC1 B;  3TLU A;  3RIA A;  5BW2 A;  5HEG A;  5J5I A;  3UU3 A;  3ZDH A;  3U8K A;  5HCM A;  3WTN A;  5LXB A;  5J0Z A;  1UW6 A;  4BFQ A;  3UU5 A;  5AFK A;  2XQ5 A;  2XQ7 A;  4FRR A;  4XHE A;  3WTI A;  5KE4 A;  3ZDG A;  4TNW A;  5J5G A;  4QAC A;  3T4M A;  4B5D A;  2BYP A;  4QH1 A;  3WTH A;  4HFE A;  4NPP A;  4ZZB A;  4ZRU A;  5BRX A;  2XYT A;  3IGQ A;  3UU4 A;  2BYQ A;  1I9B A;  4HQP A;  4EZ1 A;  4AFT A;  3TLW A;  3EAM A;  4TWD A;  2BG9 E;  2XNU A;  4COF A;  5TVC A;  2XYS A;  3UU8 A;  3WIP A;  5AFL A;  4QAB A;  5IUX A;  5L4E A;  3P50 A;  5AFM B;  2Y54 A;  5HEJ A;  2XNV A;  4HFB A;  3WTO A;  4LML A;  3LSV A;  2WZY A;  4X5T A;  3JAE A;  4F8H A;  5L47 A;  3P4W A;  5SYO A;  4A98 A;  4ZZC A;  2BR7 A;  3GUA A;  3UU6 A;  4TWF A;  4TNV A;  2XNT A;  3RI5 A;  5KZU A;  2WNJ A;  4HFD A;  4UM3 A;  3SH1 A;  4ZR6 A;  5AFM A;  4HFC A;  3JAD A;  3C79 A;  3RHW A;  2WNC A;  4IL9 A;  2WN9 A;  2WNL A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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