4BQTA

Aplysia californica achbp in complex with cytisine
Total Genus 48
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
48
sequence length
206
structure length
206
Chain Sequence
QANLMRLKSDLFNRSPMYPGPTKDDPLTVTLGFTLQDIVKVDSSTNEVDLVYYEQQRWKLNSLMWDPNEYGNITDFRTSAADIWTPDITAYSSTRPVQVLSPQIAVVTHDGSVMFIPAQRLSFMCDPTGVDSEEGVTCAVKFGSWVYSGFEIDLKTDTDQVDLSSYYASSKYEILSATQTRQVQHYSCCPEPYIDVNLVVKFRERR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural Characterization of Binding Mode of Smoking Cessation Drugs to Nicotinic Acetylcholine Receptors Through Study of Ligand Complexes with Acetylcholine-Binding Protein.
pubmed doi rcsb
molecule tags Receptor
source organism Aplysia californica
molecule keywords SOLUBLE ACETYLCHOLINE RECEPTOR
total genus 48
structure length 206
sequence length 206
chains with identical sequence B, C, D, E
ec nomenclature
pdb deposition date 2013-06-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02931 Neur_chan_LBD Neurotransmitter-gated ion-channel ligand binding domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.70.170.10 Mainly Beta Distorted Sandwich Acetylcholine Binding Protein; Chain: A, Neurotransmitter-gated ion-channel ligand-binding domain 4bqtA00
4ILCA 4PIRA 2BYNA 4ZJSA 1UX2A 5TVCA 2PGZA 3UU8A 4HFHA 2YMDA 5L4HA 5FJVA 3WIPA 3TLTA 3UUBA 3IGQA 4TNVA 2YKSA 2QC1B 4HFEA 4WV9A 2W8GA 2XYTA 3P50A 4QH5A 3TLSA 2UZ6A 5AFMB 3PEOA 2XZ6A 4IL4A 2WNLA 5AFJA 4UM3P 4TWFA 3U8MA 5JMEA 3SH1A 4FRRA 3WTLA 5LXBA 4LMKA 4ZRUA 5HEGA 5L47A 4LMJA 2XQ4A 3SIOA 2C9TA 2VL0A 4NPPA 2Y54A 3T4MA 4BQTA 3JAEA 3TLWA 2BR7A 3WTOA 2YMEA 2XZ5A 4HFDA 4TWHA 4ZK4A 4B5DA 5HEJA 2BYRA 3LSVA 5J5IA 4BFQA 4TWDA 3EHZA 4A98A 2WNJA 4UY2A 2YOEA 2XQ5A 2X00A 5AINA 5BRXA 1UV6A 5BP0A 3JAFA 4F8HA 4COFA 2XQ9A 3EI0A 3U8KA 5HCMA 5HEHA 4QACA 3GUAA 5AFNA 2XQ8A 2BG9B 4ZZBA 3RHWA 4DBMA 5L4EA 2WZYA 2X00D 3C84A 5SYOA 1I9BA 2W8FA 4UM3A 4XK9A 3ZDHA 4HQPA 3C79A 2WN9A 3U8NA 4UM1A 3UU4A 3JADA 2BJ0A 3UU3A 2XQ3A 3UQ4A 5J0ZA 5AFKA 3PMZA 4ILAA 4QABA 2BYSA 4XHEA 4HFBA 4IREA 3WTHA 5HCJA 4HFCA 3U8JA 2XNTA 3RI5A 4UXUA 3U8LA 2BG9E 2XNVA 3WTNA 5J5HA 2XNUA 4NZBA 3UU6A 4ALXA 5AFHA 4HFIA 3RQUA 4ZK1A 3WTKA 3WTIA 3UU5A 5J5FA 5AFMA 2Y57A 5KE4A 4AFTA 4EZ1A 2XQ7A 2XYSA 2Y56A 4Z91A 3RQWA 2YN6A 4ZZCA 2XQ6A 2BG9C 5HEUA 4Z90A 2PH9A 3EAMA 3SQ6A 4TNWA 5IUXA 2BYPA 3UQ7A 2XQAA 4QH1A 4D01A 2BR8A 5CO5A 3ZKRA 5HEOA 4AFGA 4UM3S 3WTJA 2ZJUA 4X5TA 4ZR6A 3SQ9A 3ZDGA 4LMLA 3WTMA 3RIAA 5J5GA 5LG3A 2Y58A 2BYQA 5AFLA 2WNCA 3RIFA 4AFHA 4IL9A 1UW6A 4ILBA 4QAAA 4QH4A 5BW2A 4A97A 2ZJVA 5KZUA 3TLVA 2BG9A 4ZJTA 3TLUA 3P4WA 5CFBA 2Y7YA
chains in the Genus database with same CATH superfamily
4ILCA 4PIRA 2BYNA 4ZJSA 1UX2A 5TVCA 2PGZA 3UU8A 4HFHA 2YMDA 5L4HA 5FJVA 3WIPA 3TLTA 3UUBA 3IGQA 4TNVA 2YKSA 2QC1B 4HFEA 4WV9A 2W8GA 2XYTA 3P50A 4QH5A 3TLSA 2UZ6A 5AFMB 3PEOA 2XZ6A 4IL4A 2WNLA 5AFJA 4UM3P 4TWFA 3U8MA 5JMEA 3SH1A 4FRRA 3WTLA 5LXBA 4LMKA 4ZRUA 5HEGA 5L47A 4LMJA 2XQ4A 3SIOA 2C9TA 2VL0A 4NPPA 2Y54A 3T4MA 4BQTA 3JAEA 3TLWA 2BR7A 3WTOA 2YMEA 2XZ5A 4HFDA 4TWHA 4ZK4A 4B5DA 5HEJA 2BYRA 3LSVA 5J5IA 4BFQA 4TWDA 3EHZA 4A98A 2WNJA 4UY2A 2YOEA 2XQ5A 2X00A 5AINA 5BRXA 1UV6A 5BP0A 3JAFA 4F8HA 4COFA 2XQ9A 3EI0A 3U8KA 5HCMA 5HEHA 4QACA 3GUAA 5AFNA 2XQ8A 2BG9B 4ZZBA 3RHWA 4DBMA 5L4EA 2WZYA 2X00D 3C84A 5SYOA 1I9BA 2W8FA 4UM3A 4XK9A 3ZDHA 4HQPA 3C79A 2WN9A 3U8NA 4UM1A 3UU4A 3JADA 2BJ0A 3UU3A 2XQ3A 3UQ4A 5J0ZA 5AFKA 3PMZA 4ILAA 4QABA 2BYSA 4XHEA 4HFBA 4IREA 3WTHA 5HCJA 4HFCA 3U8JA 2XNTA 3RI5A 4UXUA 3U8LA 2BG9E 2XNVA 3WTNA 5J5HA 2XNUA 4NZBA 3UU6A 4ALXA 5AFHA 4HFIA 3RQUA 4ZK1A 3WTKA 3WTIA 3UU5A 5J5FA 5AFMA 2Y57A 5KE4A 4AFTA 4EZ1A 2XQ7A 2XYSA 2Y56A 4Z91A 3RQWA 2YN6A 4ZZCA 2XQ6A 2BG9C 5HEUA 4Z90A 2PH9A 3EAMA 3SQ6A 4TNWA 5IUXA 2BYPA 3UQ7A 2XQAA 4QH1A 4D01A 2BR8A 5CO5A 3ZKRA 5HEOA 4AFGA 4UM3S 3WTJA 2ZJUA 4X5TA 4ZR6A 3SQ9A 3ZDGA 4LMLA 3WTMA 3RIAA 5J5GA 5LG3A 2Y58A 2BYQA 5AFLA 2WNCA 3RIFA 4AFHA 4IL9A 1UW6A 4ILBA 4QAAA 4QH4A 5BW2A 4A97A 2ZJVA 5KZUA 3TLVA 2BG9A 4ZJTA 3TLUA 3P4WA 5CFBA 2Y7YA
chains in the Genus database with same CATH topology
4ILCA 4PIRA 2BYNA 4ZJSA 1UX2A 5TVCA 2PGZA 3UU8A 4HFHA 2YMDA 5L4HA 5FJVA 3WIPA 3TLTA 3UUBA 3IGQA 4TNVA 2YKSA 2QC1B 4HFEA 4WV9A 2W8GA 2XYTA 3P50A 4QH5A 3TLSA 2UZ6A 5AFMB 3PEOA 2XZ6A 4IL4A 2WNLA 5AFJA 4UM3P 4TWFA 3U8MA 5JMEA 3SH1A 4FRRA 3WTLA 5LXBA 4LMKA 4ZRUA 5HEGA 5L47A 4LMJA 2XQ4A 3SIOA 2C9TA 2VL0A 4NPPA 2Y54A 3T4MA 4BQTA 3JAEA 3TLWA 2BR7A 3WTOA 2YMEA 2XZ5A 4HFDA 4TWHA 4ZK4A 4B5DA 5HEJA 2BYRA 3LSVA 5J5IA 4BFQA 4TWDA 3EHZA 4A98A 2WNJA 4UY2A 2YOEA 2XQ5A 2X00A 5AINA 5BRXA 1UV6A 5BP0A 3JAFA 4F8HA 4COFA 2XQ9A 3EI0A 3U8KA 5HCMA 5HEHA 4QACA 3GUAA 5AFNA 2XQ8A 2BG9B 4ZZBA 3RHWA 4DBMA 5L4EA 2WZYA 2X00D 3C84A 5SYOA 1I9BA 2W8FA 4UM3A 4XK9A 3ZDHA 4HQPA 3C79A 2WN9A 3U8NA 4UM1A 3UU4A 3JADA 2BJ0A 3UU3A 2XQ3A 3UQ4A 5J0ZA 5AFKA 3PMZA 4ILAA 4QABA 2BYSA 4XHEA 4HFBA 4IREA 3WTHA 5HCJA 4HFCA 3U8JA 2XNTA 3RI5A 4UXUA 3U8LA 2BG9E 2XNVA 3WTNA 5J5HA 2XNUA 4NZBA 3UU6A 4ALXA 5AFHA 4HFIA 3RQUA 4ZK1A 3WTKA 3WTIA 3UU5A 5J5FA 5AFMA 2Y57A 5KE4A 4AFTA 4EZ1A 2XQ7A 2XYSA 2Y56A 4Z91A 3RQWA 2YN6A 4ZZCA 2XQ6A 2BG9C 5HEUA 4Z90A 2PH9A 3EAMA 3SQ6A 4TNWA 5IUXA 2BYPA 3UQ7A 2XQAA 4QH1A 4D01A 2BR8A 5CO5A 3ZKRA 5HEOA 4AFGA 4UM3S 3WTJA 2ZJUA 4X5TA 4ZR6A 3SQ9A 3ZDGA 4LMLA 3WTMA 3RIAA 5J5GA 5LG3A 2Y58A 2BYQA 5AFLA 2WNCA 3RIFA 4AFHA 4IL9A 1UW6A 4ILBA 4QAAA 4QH4A 5BW2A 4A97A 2ZJVA 5KZUA 3TLVA 2BG9A 4ZJTA 3TLUA 3P4WA 5CFBA 2Y7YA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4ILC A;  4PIR A;  2BYN A;  4ZJS A;  1UX2 A;  5TVC A;  2PGZ A;  3UU8 A;  4HFH A;  2YMD A;  5L4H A;  5FJV A;  3WIP A;  3TLT A;  3UUB A;  3IGQ A;  4TNV A;  2YKS A;  2QC1 B;  4HFE A;  4WV9 A;  2W8G A;  2XYT A;  3P50 A;  4QH5 A;  3TLS A;  2UZ6 A;  5AFM B;  3PEO A;  2XZ6 A;  4IL4 A;  2WNL A;  5AFJ A;  4UM3 P;  4TWF A;  3U8M A;  5JME A;  3SH1 A;  4FRR A;  3WTL A;  5LXB A;  4LMK A;  4ZRU A;  5HEG A;  5L47 A;  4LMJ A;  2XQ4 A;  3SIO A;  2C9T A;  2VL0 A;  4NPP A;  2Y54 A;  3T4M A;  4BQT A;  3JAE A;  3TLW A;  2BR7 A;  3WTO A;  2YME A;  2XZ5 A;  4HFD A;  4TWH A;  4ZK4 A;  4B5D A;  5HEJ A;  2BYR A;  3LSV A;  5J5I A;  4BFQ A;  4TWD A;  3EHZ A;  4A98 A;  2WNJ A;  4UY2 A;  2YOE A;  2XQ5 A;  2X00 A;  5AIN A;  5BRX A;  1UV6 A;  5BP0 A;  3JAF A;  4F8H A;  4COF A;  2XQ9 A;  3EI0 A;  3U8K A;  5HCM A;  5HEH A;  4QAC A;  3GUA A;  5AFN A;  2XQ8 A;  2BG9 B;  4ZZB A;  3RHW A;  4DBM A;  5L4E A;  2WZY A;  2X00 D;  3C84 A;  5SYO A;  1I9B A;  2W8F A;  4UM3 A;  4XK9 A;  3ZDH A;  4HQP A;  3C79 A;  2WN9 A;  3U8N A;  4UM1 A;  3UU4 A;  3JAD A;  2BJ0 A;  3UU3 A;  2XQ3 A;  3UQ4 A;  5J0Z A;  5AFK A;  3PMZ A;  4ILA A;  4QAB A;  2BYS A;  4XHE A;  4HFB A;  4IRE A;  3WTH A;  5HCJ A;  4HFC A;  3U8J A;  2XNT A;  3RI5 A;  4UXU A;  3U8L A;  2BG9 E;  2XNV A;  3WTN A;  5J5H A;  2XNU A;  4NZB A;  3UU6 A;  4ALX A;  5AFH A;  4HFI A;  3RQU A;  4ZK1 A;  3WTK A;  3WTI A;  3UU5 A;  5J5F A;  5AFM A;  2Y57 A;  5KE4 A;  4AFT A;  4EZ1 A;  2XQ7 A;  2XYS A;  2Y56 A;  4Z91 A;  3RQW A;  2YN6 A;  4ZZC A;  2XQ6 A;  2BG9 C;  5HEU A;  4Z90 A;  2PH9 A;  3EAM A;  3SQ6 A;  4TNW A;  5IUX A;  2BYP A;  3UQ7 A;  2XQA A;  4QH1 A;  4D01 A;  2BR8 A;  5CO5 A;  3ZKR A;  5HEO A;  4AFG A;  4UM3 S;  3WTJ A;  2ZJU A;  4X5T A;  4ZR6 A;  3SQ9 A;  3ZDG A;  4LML A;  3WTM A;  3RIA A;  5J5G A;  5LG3 A;  2Y58 A;  2BYQ A;  5AFL A;  2WNC A;  3RIF A;  4AFH A;  4IL9 A;  1UW6 A;  4ILB A;  4QAA A;  4QH4 A;  5BW2 A;  4A97 A;  2ZJV A;  5KZU A;  3TLV A;  2BG9 A;  4ZJT A;  3TLU A;  3P4W A;  5CFB A;  2Y7Y A; 
#chains in the Genus database with same CATH topology
 4ILC A;  4PIR A;  2BYN A;  4ZJS A;  1UX2 A;  5TVC A;  2PGZ A;  3UU8 A;  4HFH A;  2YMD A;  5L4H A;  5FJV A;  3WIP A;  3TLT A;  3UUB A;  3IGQ A;  4TNV A;  2YKS A;  2QC1 B;  4HFE A;  4WV9 A;  2W8G A;  2XYT A;  3P50 A;  4QH5 A;  3TLS A;  2UZ6 A;  5AFM B;  3PEO A;  2XZ6 A;  4IL4 A;  2WNL A;  5AFJ A;  4UM3 P;  4TWF A;  3U8M A;  5JME A;  3SH1 A;  4FRR A;  3WTL A;  5LXB A;  4LMK A;  4ZRU A;  5HEG A;  5L47 A;  4LMJ A;  2XQ4 A;  3SIO A;  2C9T A;  2VL0 A;  4NPP A;  2Y54 A;  3T4M A;  4BQT A;  3JAE A;  3TLW A;  2BR7 A;  3WTO A;  2YME A;  2XZ5 A;  4HFD A;  4TWH A;  4ZK4 A;  4B5D A;  5HEJ A;  2BYR A;  3LSV A;  5J5I A;  4BFQ A;  4TWD A;  3EHZ A;  4A98 A;  2WNJ A;  4UY2 A;  2YOE A;  2XQ5 A;  2X00 A;  5AIN A;  5BRX A;  1UV6 A;  5BP0 A;  3JAF A;  4F8H A;  4COF A;  2XQ9 A;  3EI0 A;  3U8K A;  5HCM A;  5HEH A;  4QAC A;  3GUA A;  5AFN A;  2XQ8 A;  2BG9 B;  4ZZB A;  3RHW A;  4DBM A;  5L4E A;  2WZY A;  2X00 D;  3C84 A;  5SYO A;  1I9B A;  2W8F A;  4UM3 A;  4XK9 A;  3ZDH A;  4HQP A;  3C79 A;  2WN9 A;  3U8N A;  4UM1 A;  3UU4 A;  3JAD A;  2BJ0 A;  3UU3 A;  2XQ3 A;  3UQ4 A;  5J0Z A;  5AFK A;  3PMZ A;  4ILA A;  4QAB A;  2BYS A;  4XHE A;  4HFB A;  4IRE A;  3WTH A;  5HCJ A;  4HFC A;  3U8J A;  2XNT A;  3RI5 A;  4UXU A;  3U8L A;  2BG9 E;  2XNV A;  3WTN A;  5J5H A;  2XNU A;  4NZB A;  3UU6 A;  4ALX A;  5AFH A;  4HFI A;  3RQU A;  4ZK1 A;  3WTK A;  3WTI A;  3UU5 A;  5J5F A;  5AFM A;  2Y57 A;  5KE4 A;  4AFT A;  4EZ1 A;  2XQ7 A;  2XYS A;  2Y56 A;  4Z91 A;  3RQW A;  2YN6 A;  4ZZC A;  2XQ6 A;  2BG9 C;  5HEU A;  4Z90 A;  2PH9 A;  3EAM A;  3SQ6 A;  4TNW A;  5IUX A;  2BYP A;  3UQ7 A;  2XQA A;  4QH1 A;  4D01 A;  2BR8 A;  5CO5 A;  3ZKR A;  5HEO A;  4AFG A;  4UM3 S;  3WTJ A;  2ZJU A;  4X5T A;  4ZR6 A;  3SQ9 A;  3ZDG A;  4LML A;  3WTM A;  3RIA A;  5J5G A;  5LG3 A;  2Y58 A;  2BYQ A;  5AFL A;  2WNC A;  3RIF A;  4AFH A;  4IL9 A;  1UW6 A;  4ILB A;  4QAA A;  4QH4 A;  5BW2 A;  4A97 A;  2ZJV A;  5KZU A;  3TLV A;  2BG9 A;  4ZJT A;  3TLU A;  3P4W A;  5CFB A;  2Y7Y A; 
#chains in the Genus database with same CATH homology
 4ILC A;  4PIR A;  2BYN A;  4ZJS A;  1UX2 A;  5TVC A;  2PGZ A;  3UU8 A;  4HFH A;  2YMD A;  5L4H A;  5FJV A;  3WIP A;  3TLT A;  3UUB A;  3IGQ A;  4TNV A;  2YKS A;  2QC1 B;  4HFE A;  4WV9 A;  2W8G A;  2XYT A;  3P50 A;  4QH5 A;  3TLS A;  2UZ6 A;  5AFM B;  3PEO A;  2XZ6 A;  4IL4 A;  2WNL A;  5AFJ A;  4UM3 P;  4TWF A;  3U8M A;  5JME A;  3SH1 A;  4FRR A;  3WTL A;  5LXB A;  4LMK A;  4ZRU A;  5HEG A;  5L47 A;  4LMJ A;  2XQ4 A;  3SIO A;  2C9T A;  2VL0 A;  4NPP A;  2Y54 A;  3T4M A;  4BQT A;  3JAE A;  3TLW A;  2BR7 A;  3WTO A;  2YME A;  2XZ5 A;  4HFD A;  4TWH A;  4ZK4 A;  4B5D A;  5HEJ A;  2BYR A;  3LSV A;  5J5I A;  4BFQ A;  4TWD A;  3EHZ A;  4A98 A;  2WNJ A;  4UY2 A;  2YOE A;  2XQ5 A;  2X00 A;  5AIN A;  5BRX A;  1UV6 A;  5BP0 A;  3JAF A;  4F8H A;  4COF A;  2XQ9 A;  3EI0 A;  3U8K A;  5HCM A;  5HEH A;  4QAC A;  3GUA A;  5AFN A;  2XQ8 A;  2BG9 B;  4ZZB A;  3RHW A;  4DBM A;  5L4E A;  2WZY A;  2X00 D;  3C84 A;  5SYO A;  1I9B A;  2W8F A;  4UM3 A;  4XK9 A;  3ZDH A;  4HQP A;  3C79 A;  2WN9 A;  3U8N A;  4UM1 A;  3UU4 A;  3JAD A;  2BJ0 A;  3UU3 A;  2XQ3 A;  3UQ4 A;  5J0Z A;  5AFK A;  3PMZ A;  4ILA A;  4QAB A;  2BYS A;  4XHE A;  4HFB A;  4IRE A;  3WTH A;  5HCJ A;  4HFC A;  3U8J A;  2XNT A;  3RI5 A;  4UXU A;  3U8L A;  2BG9 E;  2XNV A;  3WTN A;  5J5H A;  2XNU A;  4NZB A;  3UU6 A;  4ALX A;  5AFH A;  4HFI A;  3RQU A;  4ZK1 A;  3WTK A;  3WTI A;  3UU5 A;  5J5F A;  5AFM A;  2Y57 A;  5KE4 A;  4AFT A;  4EZ1 A;  2XQ7 A;  2XYS A;  2Y56 A;  4Z91 A;  3RQW A;  2YN6 A;  4ZZC A;  2XQ6 A;  2BG9 C;  5HEU A;  4Z90 A;  2PH9 A;  3EAM A;  3SQ6 A;  4TNW A;  5IUX A;  2BYP A;  3UQ7 A;  2XQA A;  4QH1 A;  4D01 A;  2BR8 A;  5CO5 A;  3ZKR A;  5HEO A;  4AFG A;  4UM3 S;  3WTJ A;  2ZJU A;  4X5T A;  4ZR6 A;  3SQ9 A;  3ZDG A;  4LML A;  3WTM A;  3RIA A;  5J5G A;  5LG3 A;  2Y58 A;  2BYQ A;  5AFL A;  2WNC A;  3RIF A;  4AFH A;  4IL9 A;  1UW6 A;  4ILB A;  4QAA A;  4QH4 A;  5BW2 A;  4A97 A;  2ZJV A;  5KZU A;  3TLV A;  2BG9 A;  4ZJT A;  3TLU A;  3P4W A;  5CFB A;  2Y7Y A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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