4UY2A

Crystal structure of the complex of the extracellular domain of human alpha9 nachr with alpha-bungarotoxin.
Total Genus 34

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
34
sequence length
208
structure length
203
Chain Sequence
YAQKLFNDLFEDYSNALRPVEDTDKVLNVTLQITLSQIKDMDERNQILTAYLWIRQIWHDAYLTWDRDQYDGLDSIRIPSDLVWRPDIVLYNKADPVNTNVVLRYDGLITWDAPAITKSSCVVDVTYFPFDNQQCNLTFGSWTYNGNQVDIFNALDSGDLSDFIEDVEWEVHGMPAVKNVISYGCCSEPYPDVTFTLLLKRRS

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
3H1 (6-8)EMPTYTI2 (12-15)TIV2 (10-13)3H2 (84-86)TIV3 (13-16)O1 (18-20)O2 (22-24)TIV5 (24-27)S7 (142-150)TI3 (26-29)TIV13 (150-153)O6 (29-33)S2 (51-63)S1 (31-46)TI10 (154-157)S8 (158-162)S6 (117-132)TI4 (46-49)TI5 (47-50)TI6 (64-67)TIV10 (73-76)TIV9 (72-75)S3 (80-83)TIV12 (137-140)O3 (90-92)TVIII1 (138-141)TIV11 (134-137)S11 (199-209)O4 (130-144)TI12 (192-195)TI11 (175-178)TIV17 (169-172)S9 (179-182)S10 (185-190)TI9 (113-116)S5 (109-112)TIV8 (70-73)Updating...
connected with : NaN
molecule tags Toxin-binding protein/toxin
source organism Homo sapiens
publication title Crystal Structures of Free and Antagonist-Bound States of Human Alpha9 Nicotinic Receptor Extracellular Domain
pubmed doi rcsb
molecule keywords NEURONAL ACETYLCHOLINE RECEPTOR SUBUNIT ALPHA-9
total genus 34
structure length 203
sequence length 208
chains with identical sequence B
ec nomenclature
pdb deposition date 2014-08-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02931 Neur_chan_LBD Neurotransmitter-gated ion-channel ligand binding domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.70.170.10 Mainly Beta Distorted Sandwich Acetylcholine Binding Protein; Chain: A, Neurotransmitter-gated ion-channel ligand-binding domain 4uy2A00
5L4HA 3GUAA 3UQ4A 3TLVA 2PH9A 3WTIA 2X00D 2QC1B 2XNTA 2Y58A 2UZ6A 4QABA 4IL4A 3RIAA 3U8MA 5AINA 5BW2A 2X00A 2WNJA 1UV6A 2BYQA 3RIFA 3WTHA 4HFBA 4ZJTA 2ZJVA 4HFEA 2Y54A 2Y56A 4QACA 2W8GA 5AFHA 4NPPA 4ZJSA 3ZDGA 4ZK1A 4TWFA 5AFJA 3IGQA 4UY2A 5CO5A 2BG9C 4UM3S 3RQWA 2XQ4A 4B5DA 3JAFA 4HFIA 3WTJA 5HEJA 4QH1A 2Y57A 5HEUA 4BFQA 5IUXA 2BG9A 4Z91A 3WTOA 4HFHA 2W8FA 3RQUA 5J5IA 4LMJA 5HEHA 4ALXA 2BYRA 2Y7YA 3WTLA 5HCMA 4PIRA 5CFBA 3P50A 3UU4A 3TLUA 5TVCA 3TLSA 5BRXA 5L47A 2YMEA 4ILAA 5AFMA 5L4EA 2YKSA 4UXUA 4LMKA 4F8HA 5HEOA 4TWDA 5AFKA 3SQ6A 3UU5A 4TNWA 5KE4A 1UX2A 4TNVA 5J5FA 2WZYA 4QH5A 3U8NA 5HCJA 5JMEA 3EI0A 4Z90A 4BQTA 2BYSA 4X5TA 4DBMA 5BP0A 3UU3A 2BG9E 5J5GA 1I9BA 2XQ3A 3ZKRA 3C84A 4EZ1A 2WNLA 4IL9A 5AFNA 4HFCA 4TWHA 2XZ5A 3SQ9A 4XK9A 4QH4A 4UM1A 5J5HA 3UU8A 3LSVA 4A97A 4A98A 2BYPA 5LG3A 2XQ6A 4HFDA 4D01A 3WTKA 2ZJUA 3TLTA 2XYTA 4XHEA 2YMDA 4COFA 2BR8A 3EHZA 3JADA 2XQ7A 2XYSA 2C9TA 5HEGA 2WNCA 3EAMA 4UM3P 3UQ7A 4IREA 2BYNA 2BR7A 1UW6A 2VL0A 2XNUA 3ZDHA 5KZUA 2YOEA 5SYOA 3JAEA 3U8JA 3WTNA 3PMZA 2BG9B 4ILBA 4ZZCA 2WN9A 2BJ0A 4ZR6A 4ZK4A 3PEOA 4LMLA 4QAAA 5FJVA 4HQPA 2XNVA 3U8KA 3WTMA 2YN6A 3TLWA 3RHWA 3WIPA 4AFTA 5AFMB 4FRRA 3UUBA 3RI5A 2XZ6A 3P4WA 3T4MA 2XQ5A 3SIOA 3C79A 2XQ8A 5LXBA 5AFLA 3SH1A 4ILCA 4WV9A 4AFHA 4AFGA 2XQ9A 4NZBA 5J0ZA 2PGZA 2XQAA 4ZRUA 3UU6A 4ZZBA 3U8LA 4UM3A
chains in the Genus database with same CATH superfamily
5L4HA 3GUAA 3UQ4A 3TLVA 2PH9A 3WTIA 2X00D 2QC1B 2XNTA 2Y58A 2UZ6A 4QABA 4IL4A 3RIAA 3U8MA 5AINA 5BW2A 2X00A 2WNJA 1UV6A 2BYQA 3RIFA 3WTHA 4HFBA 4ZJTA 2ZJVA 4HFEA 2Y54A 2Y56A 4QACA 2W8GA 5AFHA 4NPPA 4ZJSA 3ZDGA 4ZK1A 4TWFA 5AFJA 3IGQA 4UY2A 5CO5A 2BG9C 4UM3S 3RQWA 2XQ4A 4B5DA 3JAFA 4HFIA 3WTJA 5HEJA 4QH1A 2Y57A 5HEUA 4BFQA 5IUXA 2BG9A 4Z91A 3WTOA 4HFHA 2W8FA 3RQUA 5J5IA 4LMJA 5HEHA 4ALXA 2BYRA 2Y7YA 3WTLA 5HCMA 4PIRA 5CFBA 3P50A 3UU4A 3TLUA 5TVCA 3TLSA 5BRXA 5L47A 2YMEA 4ILAA 5AFMA 5L4EA 2YKSA 4UXUA 4LMKA 4F8HA 5HEOA 4TWDA 5AFKA 3SQ6A 3UU5A 4TNWA 5KE4A 1UX2A 4TNVA 5J5FA 2WZYA 4QH5A 3U8NA 5HCJA 5JMEA 3EI0A 4Z90A 4BQTA 2BYSA 4X5TA 4DBMA 5BP0A 3UU3A 2BG9E 5J5GA 1I9BA 2XQ3A 3ZKRA 3C84A 4EZ1A 2WNLA 4IL9A 5AFNA 4HFCA 4TWHA 2XZ5A 3SQ9A 4XK9A 4QH4A 4UM1A 5J5HA 3UU8A 3LSVA 4A97A 4A98A 2BYPA 5LG3A 2XQ6A 4HFDA 4D01A 3WTKA 2ZJUA 3TLTA 2XYTA 4XHEA 2YMDA 4COFA 2BR8A 3EHZA 3JADA 2XQ7A 2XYSA 2C9TA 5HEGA 2WNCA 3EAMA 4UM3P 3UQ7A 4IREA 2BYNA 2BR7A 1UW6A 2VL0A 2XNUA 3ZDHA 5KZUA 2YOEA 5SYOA 3JAEA 3U8JA 3WTNA 3PMZA 2BG9B 4ILBA 4ZZCA 2WN9A 2BJ0A 4ZR6A 4ZK4A 3PEOA 4LMLA 4QAAA 5FJVA 4HQPA 2XNVA 3U8KA 3WTMA 2YN6A 3TLWA 3RHWA 3WIPA 4AFTA 5AFMB 4FRRA 3UUBA 3RI5A 2XZ6A 3P4WA 3T4MA 2XQ5A 3SIOA 3C79A 2XQ8A 5LXBA 5AFLA 3SH1A 4ILCA 4WV9A 4AFHA 4AFGA 2XQ9A 4NZBA 5J0ZA 2PGZA 2XQAA 4ZRUA 3UU6A 4ZZBA 3U8LA 4UM3A
chains in the Genus database with same CATH topology
5L4HA 3GUAA 3UQ4A 3TLVA 2PH9A 3WTIA 2X00D 2QC1B 2XNTA 2Y58A 2UZ6A 4QABA 4IL4A 3RIAA 3U8MA 5AINA 5BW2A 2X00A 2WNJA 1UV6A 2BYQA 3RIFA 3WTHA 4HFBA 4ZJTA 2ZJVA 4HFEA 2Y54A 2Y56A 4QACA 2W8GA 5AFHA 4NPPA 4ZJSA 3ZDGA 4ZK1A 4TWFA 5AFJA 3IGQA 4UY2A 5CO5A 2BG9C 4UM3S 3RQWA 2XQ4A 4B5DA 3JAFA 4HFIA 3WTJA 5HEJA 4QH1A 2Y57A 5HEUA 4BFQA 5IUXA 2BG9A 4Z91A 3WTOA 4HFHA 2W8FA 3RQUA 5J5IA 4LMJA 5HEHA 4ALXA 2BYRA 2Y7YA 3WTLA 5HCMA 4PIRA 5CFBA 3P50A 3UU4A 3TLUA 5TVCA 3TLSA 5BRXA 5L47A 2YMEA 4ILAA 5AFMA 5L4EA 2YKSA 4UXUA 4LMKA 4F8HA 5HEOA 4TWDA 5AFKA 3SQ6A 3UU5A 4TNWA 5KE4A 1UX2A 4TNVA 5J5FA 2WZYA 4QH5A 3U8NA 5HCJA 5JMEA 3EI0A 4Z90A 4BQTA 2BYSA 4X5TA 4DBMA 5BP0A 3UU3A 2BG9E 5J5GA 1I9BA 2XQ3A 3ZKRA 3C84A 4EZ1A 2WNLA 4IL9A 5AFNA 4HFCA 4TWHA 2XZ5A 3SQ9A 4XK9A 4QH4A 4UM1A 5J5HA 3UU8A 3LSVA 4A97A 4A98A 2BYPA 5LG3A 2XQ6A 4HFDA 4D01A 3WTKA 2ZJUA 3TLTA 2XYTA 4XHEA 2YMDA 4COFA 2BR8A 3EHZA 3JADA 2XQ7A 2XYSA 2C9TA 5HEGA 2WNCA 3EAMA 4UM3P 3UQ7A 4IREA 2BYNA 2BR7A 1UW6A 2VL0A 2XNUA 3ZDHA 5KZUA 2YOEA 5SYOA 3JAEA 3U8JA 3WTNA 3PMZA 2BG9B 4ILBA 4ZZCA 2WN9A 2BJ0A 4ZR6A 4ZK4A 3PEOA 4LMLA 4QAAA 5FJVA 4HQPA 2XNVA 3U8KA 3WTMA 2YN6A 3TLWA 3RHWA 3WIPA 4AFTA 5AFMB 4FRRA 3UUBA 3RI5A 2XZ6A 3P4WA 3T4MA 2XQ5A 3SIOA 3C79A 2XQ8A 5LXBA 5AFLA 3SH1A 4ILCA 4WV9A 4AFHA 4AFGA 2XQ9A 4NZBA 5J0ZA 2PGZA 2XQAA 4ZRUA 3UU6A 4ZZBA 3U8LA 4UM3A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5L4H A;  3GUA A;  3UQ4 A;  3TLV A;  2PH9 A;  3WTI A;  2X00 D;  2QC1 B;  2XNT A;  2Y58 A;  2UZ6 A;  4QAB A;  4IL4 A;  3RIA A;  3U8M A;  5AIN A;  5BW2 A;  2X00 A;  2WNJ A;  1UV6 A;  2BYQ A;  3RIF A;  3WTH A;  4HFB A;  4ZJT A;  2ZJV A;  4HFE A;  2Y54 A;  2Y56 A;  4QAC A;  2W8G A;  5AFH A;  4NPP A;  4ZJS A;  3ZDG A;  4ZK1 A;  4TWF A;  5AFJ A;  3IGQ A;  4UY2 A;  5CO5 A;  2BG9 C;  4UM3 S;  3RQW A;  2XQ4 A;  4B5D A;  3JAF A;  4HFI A;  3WTJ A;  5HEJ A;  4QH1 A;  2Y57 A;  5HEU A;  4BFQ A;  5IUX A;  2BG9 A;  4Z91 A;  3WTO A;  4HFH A;  2W8F A;  3RQU A;  5J5I A;  4LMJ A;  5HEH A;  4ALX A;  2BYR A;  2Y7Y A;  3WTL A;  5HCM A;  4PIR A;  5CFB A;  3P50 A;  3UU4 A;  3TLU A;  5TVC A;  3TLS A;  5BRX A;  5L47 A;  2YME A;  4ILA A;  5AFM A;  5L4E A;  2YKS A;  4UXU A;  4LMK A;  4F8H A;  5HEO A;  4TWD A;  5AFK A;  3SQ6 A;  3UU5 A;  4TNW A;  5KE4 A;  1UX2 A;  4TNV A;  5J5F A;  2WZY A;  4QH5 A;  3U8N A;  5HCJ A;  5JME A;  3EI0 A;  4Z90 A;  4BQT A;  2BYS A;  4X5T A;  4DBM A;  5BP0 A;  3UU3 A;  2BG9 E;  5J5G A;  1I9B A;  2XQ3 A;  3ZKR A;  3C84 A;  4EZ1 A;  2WNL A;  4IL9 A;  5AFN A;  4HFC A;  4TWH A;  2XZ5 A;  3SQ9 A;  4XK9 A;  4QH4 A;  4UM1 A;  5J5H A;  3UU8 A;  3LSV A;  4A97 A;  4A98 A;  2BYP A;  5LG3 A;  2XQ6 A;  4HFD A;  4D01 A;  3WTK A;  2ZJU A;  3TLT A;  2XYT A;  4XHE A;  2YMD A;  4COF A;  2BR8 A;  3EHZ A;  3JAD A;  2XQ7 A;  2XYS A;  2C9T A;  5HEG A;  2WNC A;  3EAM A;  4UM3 P;  3UQ7 A;  4IRE A;  2BYN A;  2BR7 A;  1UW6 A;  2VL0 A;  2XNU A;  3ZDH A;  5KZU A;  2YOE A;  5SYO A;  3JAE A;  3U8J A;  3WTN A;  3PMZ A;  2BG9 B;  4ILB A;  4ZZC A;  2WN9 A;  2BJ0 A;  4ZR6 A;  4ZK4 A;  3PEO A;  4LML A;  4QAA A;  5FJV A;  4HQP A;  2XNV A;  3U8K A;  3WTM A;  2YN6 A;  3TLW A;  3RHW A;  3WIP A;  4AFT A;  5AFM B;  4FRR A;  3UUB A;  3RI5 A;  2XZ6 A;  3P4W A;  3T4M A;  2XQ5 A;  3SIO A;  3C79 A;  2XQ8 A;  5LXB A;  5AFL A;  3SH1 A;  4ILC A;  4WV9 A;  4AFH A;  4AFG A;  2XQ9 A;  4NZB A;  5J0Z A;  2PGZ A;  2XQA A;  4ZRU A;  3UU6 A;  4ZZB A;  3U8L A;  4UM3 A; 
#chains in the Genus database with same CATH topology
 5L4H A;  3GUA A;  3UQ4 A;  3TLV A;  2PH9 A;  3WTI A;  2X00 D;  2QC1 B;  2XNT A;  2Y58 A;  2UZ6 A;  4QAB A;  4IL4 A;  3RIA A;  3U8M A;  5AIN A;  5BW2 A;  2X00 A;  2WNJ A;  1UV6 A;  2BYQ A;  3RIF A;  3WTH A;  4HFB A;  4ZJT A;  2ZJV A;  4HFE A;  2Y54 A;  2Y56 A;  4QAC A;  2W8G A;  5AFH A;  4NPP A;  4ZJS A;  3ZDG A;  4ZK1 A;  4TWF A;  5AFJ A;  3IGQ A;  4UY2 A;  5CO5 A;  2BG9 C;  4UM3 S;  3RQW A;  2XQ4 A;  4B5D A;  3JAF A;  4HFI A;  3WTJ A;  5HEJ A;  4QH1 A;  2Y57 A;  5HEU A;  4BFQ A;  5IUX A;  2BG9 A;  4Z91 A;  3WTO A;  4HFH A;  2W8F A;  3RQU A;  5J5I A;  4LMJ A;  5HEH A;  4ALX A;  2BYR A;  2Y7Y A;  3WTL A;  5HCM A;  4PIR A;  5CFB A;  3P50 A;  3UU4 A;  3TLU A;  5TVC A;  3TLS A;  5BRX A;  5L47 A;  2YME A;  4ILA A;  5AFM A;  5L4E A;  2YKS A;  4UXU A;  4LMK A;  4F8H A;  5HEO A;  4TWD A;  5AFK A;  3SQ6 A;  3UU5 A;  4TNW A;  5KE4 A;  1UX2 A;  4TNV A;  5J5F A;  2WZY A;  4QH5 A;  3U8N A;  5HCJ A;  5JME A;  3EI0 A;  4Z90 A;  4BQT A;  2BYS A;  4X5T A;  4DBM A;  5BP0 A;  3UU3 A;  2BG9 E;  5J5G A;  1I9B A;  2XQ3 A;  3ZKR A;  3C84 A;  4EZ1 A;  2WNL A;  4IL9 A;  5AFN A;  4HFC A;  4TWH A;  2XZ5 A;  3SQ9 A;  4XK9 A;  4QH4 A;  4UM1 A;  5J5H A;  3UU8 A;  3LSV A;  4A97 A;  4A98 A;  2BYP A;  5LG3 A;  2XQ6 A;  4HFD A;  4D01 A;  3WTK A;  2ZJU A;  3TLT A;  2XYT A;  4XHE A;  2YMD A;  4COF A;  2BR8 A;  3EHZ A;  3JAD A;  2XQ7 A;  2XYS A;  2C9T A;  5HEG A;  2WNC A;  3EAM A;  4UM3 P;  3UQ7 A;  4IRE A;  2BYN A;  2BR7 A;  1UW6 A;  2VL0 A;  2XNU A;  3ZDH A;  5KZU A;  2YOE A;  5SYO A;  3JAE A;  3U8J A;  3WTN A;  3PMZ A;  2BG9 B;  4ILB A;  4ZZC A;  2WN9 A;  2BJ0 A;  4ZR6 A;  4ZK4 A;  3PEO A;  4LML A;  4QAA A;  5FJV A;  4HQP A;  2XNV A;  3U8K A;  3WTM A;  2YN6 A;  3TLW A;  3RHW A;  3WIP A;  4AFT A;  5AFM B;  4FRR A;  3UUB A;  3RI5 A;  2XZ6 A;  3P4W A;  3T4M A;  2XQ5 A;  3SIO A;  3C79 A;  2XQ8 A;  5LXB A;  5AFL A;  3SH1 A;  4ILC A;  4WV9 A;  4AFH A;  4AFG A;  2XQ9 A;  4NZB A;  5J0Z A;  2PGZ A;  2XQA A;  4ZRU A;  3UU6 A;  4ZZB A;  3U8L A;  4UM3 A; 
#chains in the Genus database with same CATH homology
 5L4H A;  3GUA A;  3UQ4 A;  3TLV A;  2PH9 A;  3WTI A;  2X00 D;  2QC1 B;  2XNT A;  2Y58 A;  2UZ6 A;  4QAB A;  4IL4 A;  3RIA A;  3U8M A;  5AIN A;  5BW2 A;  2X00 A;  2WNJ A;  1UV6 A;  2BYQ A;  3RIF A;  3WTH A;  4HFB A;  4ZJT A;  2ZJV A;  4HFE A;  2Y54 A;  2Y56 A;  4QAC A;  2W8G A;  5AFH A;  4NPP A;  4ZJS A;  3ZDG A;  4ZK1 A;  4TWF A;  5AFJ A;  3IGQ A;  4UY2 A;  5CO5 A;  2BG9 C;  4UM3 S;  3RQW A;  2XQ4 A;  4B5D A;  3JAF A;  4HFI A;  3WTJ A;  5HEJ A;  4QH1 A;  2Y57 A;  5HEU A;  4BFQ A;  5IUX A;  2BG9 A;  4Z91 A;  3WTO A;  4HFH A;  2W8F A;  3RQU A;  5J5I A;  4LMJ A;  5HEH A;  4ALX A;  2BYR A;  2Y7Y A;  3WTL A;  5HCM A;  4PIR A;  5CFB A;  3P50 A;  3UU4 A;  3TLU A;  5TVC A;  3TLS A;  5BRX A;  5L47 A;  2YME A;  4ILA A;  5AFM A;  5L4E A;  2YKS A;  4UXU A;  4LMK A;  4F8H A;  5HEO A;  4TWD A;  5AFK A;  3SQ6 A;  3UU5 A;  4TNW A;  5KE4 A;  1UX2 A;  4TNV A;  5J5F A;  2WZY A;  4QH5 A;  3U8N A;  5HCJ A;  5JME A;  3EI0 A;  4Z90 A;  4BQT A;  2BYS A;  4X5T A;  4DBM A;  5BP0 A;  3UU3 A;  2BG9 E;  5J5G A;  1I9B A;  2XQ3 A;  3ZKR A;  3C84 A;  4EZ1 A;  2WNL A;  4IL9 A;  5AFN A;  4HFC A;  4TWH A;  2XZ5 A;  3SQ9 A;  4XK9 A;  4QH4 A;  4UM1 A;  5J5H A;  3UU8 A;  3LSV A;  4A97 A;  4A98 A;  2BYP A;  5LG3 A;  2XQ6 A;  4HFD A;  4D01 A;  3WTK A;  2ZJU A;  3TLT A;  2XYT A;  4XHE A;  2YMD A;  4COF A;  2BR8 A;  3EHZ A;  3JAD A;  2XQ7 A;  2XYS A;  2C9T A;  5HEG A;  2WNC A;  3EAM A;  4UM3 P;  3UQ7 A;  4IRE A;  2BYN A;  2BR7 A;  1UW6 A;  2VL0 A;  2XNU A;  3ZDH A;  5KZU A;  2YOE A;  5SYO A;  3JAE A;  3U8J A;  3WTN A;  3PMZ A;  2BG9 B;  4ILB A;  4ZZC A;  2WN9 A;  2BJ0 A;  4ZR6 A;  4ZK4 A;  3PEO A;  4LML A;  4QAA A;  5FJV A;  4HQP A;  2XNV A;  3U8K A;  3WTM A;  2YN6 A;  3TLW A;  3RHW A;  3WIP A;  4AFT A;  5AFM B;  4FRR A;  3UUB A;  3RI5 A;  2XZ6 A;  3P4W A;  3T4M A;  2XQ5 A;  3SIO A;  3C79 A;  2XQ8 A;  5LXB A;  5AFL A;  3SH1 A;  4ILC A;  4WV9 A;  4AFH A;  4AFG A;  2XQ9 A;  4NZB A;  5J0Z A;  2PGZ A;  2XQA A;  4ZRU A;  3UU6 A;  4ZZB A;  3U8L A;  4UM3 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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