5AFMA

Alpha7-achbp in complex with lobeline and fragment 4
Total Genus 43

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
43
sequence length
205
structure length
205
Chain Sequence
GEFQRKLYKELVKNYNPDVIPTQRDRPVTVYFSLSLLQIMDVDEKNQVVDVVFWLQMSWTDHYLQWNVSEYPGVKQVSVPISSLWVPDLAAYNAISKPEVLTPQLALVNSSGHVQYLPSIRQRFSCDVSGVDTESGATCKLKFGSWTHHSRELDLQMQEADISGYIPYSRFELVGVTQKRSERFYECCKEPYPDVTFTVTFRKKG

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH1 (1-10)S3 (75-79)TI1 (15-18)TIV1 (11-14)TI3 (60-63)EMPTYO1 (19-21)TIV2 (22-25)S1 (27-42)TI2 (43-46)TIV3 (42-45)S2 (47-59)S7 (112-115)TI4 (61-64)TI6 (108-111)3H2 (80-82)S6 (104-108)S4 (88-90)S9 (136-144)S5 (93-99)TI5 (90-93)S8 (118-124)O2 (102-104)TI7 (127-130)TI8 (129-132)TI9 (132-135)S12 (187-202)TIV6 (184-187)TI10 (144-147)TI11 (148-151)S10 (152-156)S11 (170-184)TI12 (161-164)3H1 (67-69)TIV4 (70-73)Updating...
connected with : NaN
molecule tags Transport protein
source organism Homo sapiens
publication title Molecular Blueprint of Allosteric Binding Sites in a Homologue of the Agonist-Binding Domain of the Alpha7 Nicotinic Acetylcholine Receptor.
pubmed doi rcsb
molecule keywords ACETYLCHOLINE-BINDING PROTEIN, NEURONAL ACETYLCHOLINE RECEPT
total genus 43
structure length 205
sequence length 205
chains with identical sequence C, D, E
ec nomenclature
pdb deposition date 2015-01-22
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.70.170.10 Mainly Beta Distorted Sandwich Acetylcholine Binding Protein; Chain: A, Neurotransmitter-gated ion-channel ligand-binding domain 5afmA00
2PH9A 2VL0A 4QAAA 3WTNA 2XQ8A 4QACA 4ZRUA 2BG9B 3SQ9A 3UU4A 4QH5A 4AFHA 5J5IA 3U8JA 2BYPA 4Z90A 4A97A 3TLTA 4ALXA 5J5HA 5L47A 4EZ1A 3SIOA 4QH1A 5KZUA 3SH1A 4ILAA 5HEOA 3SQ6A 4LMKA 4Z91A 4UM3S 2PGZA 5LG3A 2XQ3A 4ZZCA 4FRRA 2XYSA 1UW6A 3WTJA 2ZJUA 3JAEA 2BG9A 5LXBA 4UXUA 4ZR6A 3WTMA 5AFNA 3UU3A 4NZBA 1UV6A 2X00D 5L4HA 2C9TA 3U8LA 2WNLA 3UU6A 5FJVA 2BYSA 4IL9A 3WIPA 2XZ6A 5L4EA 2WNCA 3C84A 3P50A 3T4MA 3TLWA 4LMJA 5BP0A 4UM3P 2WNJA 2Y58A 2BG9C 4HFEA 3RIFA 3UU5A 3U8KA 5AFMB 5J5FA 3JADA 5HEUA 4ZZBA 2BJ0A 3EAMA 2XNUA 4HFDA 5CO5A 4BQTA 3RI5A 3P4WA 4LMLA 3U8MA 3PEOA 2ZJVA 2X00A 2W8GA 4PIRA 2XQ4A 4IREA 2XQAA 3TLVA 4HFCA 4HFBA 2YOEA 3RQWA 5HEJA 4DBMA 3ZDHA 2XNTA 5HCJA 5AFMA 4WV9A 2BR8A 5J5GA 3WTOA 4AFGA 3TLUA 2YMDA 5AFHA 3LSVA 4TWHA 3U8NA 2XQ6A 2YKSA 5AFJA 4F8HA 3EHZA 2BYQA 3GUAA 4B5DA 4ILCA 2BYRA 4QABA 2Y7YA 4ZJSA 2BR7A 2BG9E 2Y54A 3UU8A 5HEGA 5HEHA 2BYNA 2XYTA 3UUBA 3RIAA 3ZKRA 5CFBA 3WTIA 5TVCA 4TNWA 3WTKA 3UQ4A 3UQ7A 4UY2A 4UM3A 2XQ5A 2YMEA 4A98A 5AINA 4TNVA 3IGQA 5KE4A 4X5TA 5AFLA 4D01A 5BRXA 5AFKA 4XK9A 5JMEA 3RHWA 5J0ZA 5BW2A 4ZK4A 4HFHA 3WTLA 2XQ7A 3RQUA 4ILBA 3C79A 3EI0A 4IL4A 4HFIA 3ZDGA 2YN6A 2XZ5A 2W8FA 2WN9A 2XNVA 5HCMA 4ZK1A 4TWDA 3WTHA 2Y57A 4HQPA 4NPPA 2UZ6A 4TWFA 4UM1A 4COFA 1I9BA 2QC1B 2WZYA 1UX2A 4QH4A 2Y56A 5SYOA 4XHEA 4AFTA 3PMZA 4BFQA 3TLSA 3JAFA 5IUXA 4ZJTA 2XQ9A
chains in the Genus database with same CATH superfamily
2PH9A 2VL0A 4QAAA 3WTNA 2XQ8A 4QACA 4ZRUA 2BG9B 3SQ9A 3UU4A 4QH5A 4AFHA 5J5IA 3U8JA 2BYPA 4Z90A 4A97A 3TLTA 4ALXA 5J5HA 5L47A 4EZ1A 3SIOA 4QH1A 5KZUA 3SH1A 4ILAA 5HEOA 3SQ6A 4LMKA 4Z91A 4UM3S 2PGZA 5LG3A 2XQ3A 4ZZCA 4FRRA 2XYSA 1UW6A 3WTJA 2ZJUA 3JAEA 2BG9A 5LXBA 4UXUA 4ZR6A 3WTMA 5AFNA 3UU3A 4NZBA 1UV6A 2X00D 5L4HA 2C9TA 3U8LA 2WNLA 3UU6A 5FJVA 2BYSA 4IL9A 3WIPA 2XZ6A 5L4EA 2WNCA 3C84A 3P50A 3T4MA 3TLWA 4LMJA 5BP0A 4UM3P 2WNJA 2Y58A 2BG9C 4HFEA 3RIFA 3UU5A 3U8KA 5AFMB 5J5FA 3JADA 5HEUA 4ZZBA 2BJ0A 3EAMA 2XNUA 4HFDA 5CO5A 4BQTA 3RI5A 3P4WA 4LMLA 3U8MA 3PEOA 2ZJVA 2X00A 2W8GA 4PIRA 2XQ4A 4IREA 2XQAA 3TLVA 4HFCA 4HFBA 2YOEA 3RQWA 5HEJA 4DBMA 3ZDHA 2XNTA 5HCJA 5AFMA 4WV9A 2BR8A 5J5GA 3WTOA 4AFGA 3TLUA 2YMDA 5AFHA 3LSVA 4TWHA 3U8NA 2XQ6A 2YKSA 5AFJA 4F8HA 3EHZA 2BYQA 3GUAA 4B5DA 4ILCA 2BYRA 4QABA 2Y7YA 4ZJSA 2BR7A 2BG9E 2Y54A 3UU8A 5HEGA 5HEHA 2BYNA 2XYTA 3UUBA 3RIAA 3ZKRA 5CFBA 3WTIA 5TVCA 4TNWA 3WTKA 3UQ4A 3UQ7A 4UY2A 4UM3A 2XQ5A 2YMEA 4A98A 5AINA 4TNVA 3IGQA 5KE4A 4X5TA 5AFLA 4D01A 5BRXA 5AFKA 4XK9A 5JMEA 3RHWA 5J0ZA 5BW2A 4ZK4A 4HFHA 3WTLA 2XQ7A 3RQUA 4ILBA 3C79A 3EI0A 4IL4A 4HFIA 3ZDGA 2YN6A 2XZ5A 2W8FA 2WN9A 2XNVA 5HCMA 4ZK1A 4TWDA 3WTHA 2Y57A 4HQPA 4NPPA 2UZ6A 4TWFA 4UM1A 4COFA 1I9BA 2QC1B 2WZYA 1UX2A 4QH4A 2Y56A 5SYOA 4XHEA 4AFTA 3PMZA 4BFQA 3TLSA 3JAFA 5IUXA 4ZJTA 2XQ9A
chains in the Genus database with same CATH topology
2PH9A 2VL0A 4QAAA 3WTNA 2XQ8A 4QACA 4ZRUA 2BG9B 3SQ9A 3UU4A 4QH5A 4AFHA 5J5IA 3U8JA 2BYPA 4Z90A 4A97A 3TLTA 4ALXA 5J5HA 5L47A 4EZ1A 3SIOA 4QH1A 5KZUA 3SH1A 4ILAA 5HEOA 3SQ6A 4LMKA 4Z91A 4UM3S 2PGZA 5LG3A 2XQ3A 4ZZCA 4FRRA 2XYSA 1UW6A 3WTJA 2ZJUA 3JAEA 2BG9A 5LXBA 4UXUA 4ZR6A 3WTMA 5AFNA 3UU3A 4NZBA 1UV6A 2X00D 5L4HA 2C9TA 3U8LA 2WNLA 3UU6A 5FJVA 2BYSA 4IL9A 3WIPA 2XZ6A 5L4EA 2WNCA 3C84A 3P50A 3T4MA 3TLWA 4LMJA 5BP0A 4UM3P 2WNJA 2Y58A 2BG9C 4HFEA 3RIFA 3UU5A 3U8KA 5AFMB 5J5FA 3JADA 5HEUA 4ZZBA 2BJ0A 3EAMA 2XNUA 4HFDA 5CO5A 4BQTA 3RI5A 3P4WA 4LMLA 3U8MA 3PEOA 2ZJVA 2X00A 2W8GA 4PIRA 2XQ4A 4IREA 2XQAA 3TLVA 4HFCA 4HFBA 2YOEA 3RQWA 5HEJA 4DBMA 3ZDHA 2XNTA 5HCJA 5AFMA 4WV9A 2BR8A 5J5GA 3WTOA 4AFGA 3TLUA 2YMDA 5AFHA 3LSVA 4TWHA 3U8NA 2XQ6A 2YKSA 5AFJA 4F8HA 3EHZA 2BYQA 3GUAA 4B5DA 4ILCA 2BYRA 4QABA 2Y7YA 4ZJSA 2BR7A 2BG9E 2Y54A 3UU8A 5HEGA 5HEHA 2BYNA 2XYTA 3UUBA 3RIAA 3ZKRA 5CFBA 3WTIA 5TVCA 4TNWA 3WTKA 3UQ4A 3UQ7A 4UY2A 4UM3A 2XQ5A 2YMEA 4A98A 5AINA 4TNVA 3IGQA 5KE4A 4X5TA 5AFLA 4D01A 5BRXA 5AFKA 4XK9A 5JMEA 3RHWA 5J0ZA 5BW2A 4ZK4A 4HFHA 3WTLA 2XQ7A 3RQUA 4ILBA 3C79A 3EI0A 4IL4A 4HFIA 3ZDGA 2YN6A 2XZ5A 2W8FA 2WN9A 2XNVA 5HCMA 4ZK1A 4TWDA 3WTHA 2Y57A 4HQPA 4NPPA 2UZ6A 4TWFA 4UM1A 4COFA 1I9BA 2QC1B 2WZYA 1UX2A 4QH4A 2Y56A 5SYOA 4XHEA 4AFTA 3PMZA 4BFQA 3TLSA 3JAFA 5IUXA 4ZJTA 2XQ9A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2PH9 A;  2VL0 A;  4QAA A;  3WTN A;  2XQ8 A;  4QAC A;  4ZRU A;  2BG9 B;  3SQ9 A;  3UU4 A;  4QH5 A;  4AFH A;  5J5I A;  3U8J A;  2BYP A;  4Z90 A;  4A97 A;  3TLT A;  4ALX A;  5J5H A;  5L47 A;  4EZ1 A;  3SIO A;  4QH1 A;  5KZU A;  3SH1 A;  4ILA A;  5HEO A;  3SQ6 A;  4LMK A;  4Z91 A;  4UM3 S;  2PGZ A;  5LG3 A;  2XQ3 A;  4ZZC A;  4FRR A;  2XYS A;  1UW6 A;  3WTJ A;  2ZJU A;  3JAE A;  2BG9 A;  5LXB A;  4UXU A;  4ZR6 A;  3WTM A;  5AFN A;  3UU3 A;  4NZB A;  1UV6 A;  2X00 D;  5L4H A;  2C9T A;  3U8L A;  2WNL A;  3UU6 A;  5FJV A;  2BYS A;  4IL9 A;  3WIP A;  2XZ6 A;  5L4E A;  2WNC A;  3C84 A;  3P50 A;  3T4M A;  3TLW A;  4LMJ A;  5BP0 A;  4UM3 P;  2WNJ A;  2Y58 A;  2BG9 C;  4HFE A;  3RIF A;  3UU5 A;  3U8K A;  5AFM B;  5J5F A;  3JAD A;  5HEU A;  4ZZB A;  2BJ0 A;  3EAM A;  2XNU A;  4HFD A;  5CO5 A;  4BQT A;  3RI5 A;  3P4W A;  4LML A;  3U8M A;  3PEO A;  2ZJV A;  2X00 A;  2W8G A;  4PIR A;  2XQ4 A;  4IRE A;  2XQA A;  3TLV A;  4HFC A;  4HFB A;  2YOE A;  3RQW A;  5HEJ A;  4DBM A;  3ZDH A;  2XNT A;  5HCJ A;  5AFM A;  4WV9 A;  2BR8 A;  5J5G A;  3WTO A;  4AFG A;  3TLU A;  2YMD A;  5AFH A;  3LSV A;  4TWH A;  3U8N A;  2XQ6 A;  2YKS A;  5AFJ A;  4F8H A;  3EHZ A;  2BYQ A;  3GUA A;  4B5D A;  4ILC A;  2BYR A;  4QAB A;  2Y7Y A;  4ZJS A;  2BR7 A;  2BG9 E;  2Y54 A;  3UU8 A;  5HEG A;  5HEH A;  2BYN A;  2XYT A;  3UUB A;  3RIA A;  3ZKR A;  5CFB A;  3WTI A;  5TVC A;  4TNW A;  3WTK A;  3UQ4 A;  3UQ7 A;  4UY2 A;  4UM3 A;  2XQ5 A;  2YME A;  4A98 A;  5AIN A;  4TNV A;  3IGQ A;  5KE4 A;  4X5T A;  5AFL A;  4D01 A;  5BRX A;  5AFK A;  4XK9 A;  5JME A;  3RHW A;  5J0Z A;  5BW2 A;  4ZK4 A;  4HFH A;  3WTL A;  2XQ7 A;  3RQU A;  4ILB A;  3C79 A;  3EI0 A;  4IL4 A;  4HFI A;  3ZDG A;  2YN6 A;  2XZ5 A;  2W8F A;  2WN9 A;  2XNV A;  5HCM A;  4ZK1 A;  4TWD A;  3WTH A;  2Y57 A;  4HQP A;  4NPP A;  2UZ6 A;  4TWF A;  4UM1 A;  4COF A;  1I9B A;  2QC1 B;  2WZY A;  1UX2 A;  4QH4 A;  2Y56 A;  5SYO A;  4XHE A;  4AFT A;  3PMZ A;  4BFQ A;  3TLS A;  3JAF A;  5IUX A;  4ZJT A;  2XQ9 A; 
#chains in the Genus database with same CATH topology
 2PH9 A;  2VL0 A;  4QAA A;  3WTN A;  2XQ8 A;  4QAC A;  4ZRU A;  2BG9 B;  3SQ9 A;  3UU4 A;  4QH5 A;  4AFH A;  5J5I A;  3U8J A;  2BYP A;  4Z90 A;  4A97 A;  3TLT A;  4ALX A;  5J5H A;  5L47 A;  4EZ1 A;  3SIO A;  4QH1 A;  5KZU A;  3SH1 A;  4ILA A;  5HEO A;  3SQ6 A;  4LMK A;  4Z91 A;  4UM3 S;  2PGZ A;  5LG3 A;  2XQ3 A;  4ZZC A;  4FRR A;  2XYS A;  1UW6 A;  3WTJ A;  2ZJU A;  3JAE A;  2BG9 A;  5LXB A;  4UXU A;  4ZR6 A;  3WTM A;  5AFN A;  3UU3 A;  4NZB A;  1UV6 A;  2X00 D;  5L4H A;  2C9T A;  3U8L A;  2WNL A;  3UU6 A;  5FJV A;  2BYS A;  4IL9 A;  3WIP A;  2XZ6 A;  5L4E A;  2WNC A;  3C84 A;  3P50 A;  3T4M A;  3TLW A;  4LMJ A;  5BP0 A;  4UM3 P;  2WNJ A;  2Y58 A;  2BG9 C;  4HFE A;  3RIF A;  3UU5 A;  3U8K A;  5AFM B;  5J5F A;  3JAD A;  5HEU A;  4ZZB A;  2BJ0 A;  3EAM A;  2XNU A;  4HFD A;  5CO5 A;  4BQT A;  3RI5 A;  3P4W A;  4LML A;  3U8M A;  3PEO A;  2ZJV A;  2X00 A;  2W8G A;  4PIR A;  2XQ4 A;  4IRE A;  2XQA A;  3TLV A;  4HFC A;  4HFB A;  2YOE A;  3RQW A;  5HEJ A;  4DBM A;  3ZDH A;  2XNT A;  5HCJ A;  5AFM A;  4WV9 A;  2BR8 A;  5J5G A;  3WTO A;  4AFG A;  3TLU A;  2YMD A;  5AFH A;  3LSV A;  4TWH A;  3U8N A;  2XQ6 A;  2YKS A;  5AFJ A;  4F8H A;  3EHZ A;  2BYQ A;  3GUA A;  4B5D A;  4ILC A;  2BYR A;  4QAB A;  2Y7Y A;  4ZJS A;  2BR7 A;  2BG9 E;  2Y54 A;  3UU8 A;  5HEG A;  5HEH A;  2BYN A;  2XYT A;  3UUB A;  3RIA A;  3ZKR A;  5CFB A;  3WTI A;  5TVC A;  4TNW A;  3WTK A;  3UQ4 A;  3UQ7 A;  4UY2 A;  4UM3 A;  2XQ5 A;  2YME A;  4A98 A;  5AIN A;  4TNV A;  3IGQ A;  5KE4 A;  4X5T A;  5AFL A;  4D01 A;  5BRX A;  5AFK A;  4XK9 A;  5JME A;  3RHW A;  5J0Z A;  5BW2 A;  4ZK4 A;  4HFH A;  3WTL A;  2XQ7 A;  3RQU A;  4ILB A;  3C79 A;  3EI0 A;  4IL4 A;  4HFI A;  3ZDG A;  2YN6 A;  2XZ5 A;  2W8F A;  2WN9 A;  2XNV A;  5HCM A;  4ZK1 A;  4TWD A;  3WTH A;  2Y57 A;  4HQP A;  4NPP A;  2UZ6 A;  4TWF A;  4UM1 A;  4COF A;  1I9B A;  2QC1 B;  2WZY A;  1UX2 A;  4QH4 A;  2Y56 A;  5SYO A;  4XHE A;  4AFT A;  3PMZ A;  4BFQ A;  3TLS A;  3JAF A;  5IUX A;  4ZJT A;  2XQ9 A; 
#chains in the Genus database with same CATH homology
 2PH9 A;  2VL0 A;  4QAA A;  3WTN A;  2XQ8 A;  4QAC A;  4ZRU A;  2BG9 B;  3SQ9 A;  3UU4 A;  4QH5 A;  4AFH A;  5J5I A;  3U8J A;  2BYP A;  4Z90 A;  4A97 A;  3TLT A;  4ALX A;  5J5H A;  5L47 A;  4EZ1 A;  3SIO A;  4QH1 A;  5KZU A;  3SH1 A;  4ILA A;  5HEO A;  3SQ6 A;  4LMK A;  4Z91 A;  4UM3 S;  2PGZ A;  5LG3 A;  2XQ3 A;  4ZZC A;  4FRR A;  2XYS A;  1UW6 A;  3WTJ A;  2ZJU A;  3JAE A;  2BG9 A;  5LXB A;  4UXU A;  4ZR6 A;  3WTM A;  5AFN A;  3UU3 A;  4NZB A;  1UV6 A;  2X00 D;  5L4H A;  2C9T A;  3U8L A;  2WNL A;  3UU6 A;  5FJV A;  2BYS A;  4IL9 A;  3WIP A;  2XZ6 A;  5L4E A;  2WNC A;  3C84 A;  3P50 A;  3T4M A;  3TLW A;  4LMJ A;  5BP0 A;  4UM3 P;  2WNJ A;  2Y58 A;  2BG9 C;  4HFE A;  3RIF A;  3UU5 A;  3U8K A;  5AFM B;  5J5F A;  3JAD A;  5HEU A;  4ZZB A;  2BJ0 A;  3EAM A;  2XNU A;  4HFD A;  5CO5 A;  4BQT A;  3RI5 A;  3P4W A;  4LML A;  3U8M A;  3PEO A;  2ZJV A;  2X00 A;  2W8G A;  4PIR A;  2XQ4 A;  4IRE A;  2XQA A;  3TLV A;  4HFC A;  4HFB A;  2YOE A;  3RQW A;  5HEJ A;  4DBM A;  3ZDH A;  2XNT A;  5HCJ A;  5AFM A;  4WV9 A;  2BR8 A;  5J5G A;  3WTO A;  4AFG A;  3TLU A;  2YMD A;  5AFH A;  3LSV A;  4TWH A;  3U8N A;  2XQ6 A;  2YKS A;  5AFJ A;  4F8H A;  3EHZ A;  2BYQ A;  3GUA A;  4B5D A;  4ILC A;  2BYR A;  4QAB A;  2Y7Y A;  4ZJS A;  2BR7 A;  2BG9 E;  2Y54 A;  3UU8 A;  5HEG A;  5HEH A;  2BYN A;  2XYT A;  3UUB A;  3RIA A;  3ZKR A;  5CFB A;  3WTI A;  5TVC A;  4TNW A;  3WTK A;  3UQ4 A;  3UQ7 A;  4UY2 A;  4UM3 A;  2XQ5 A;  2YME A;  4A98 A;  5AIN A;  4TNV A;  3IGQ A;  5KE4 A;  4X5T A;  5AFL A;  4D01 A;  5BRX A;  5AFK A;  4XK9 A;  5JME A;  3RHW A;  5J0Z A;  5BW2 A;  4ZK4 A;  4HFH A;  3WTL A;  2XQ7 A;  3RQU A;  4ILB A;  3C79 A;  3EI0 A;  4IL4 A;  4HFI A;  3ZDG A;  2YN6 A;  2XZ5 A;  2W8F A;  2WN9 A;  2XNV A;  5HCM A;  4ZK1 A;  4TWD A;  3WTH A;  2Y57 A;  4HQP A;  4NPP A;  2UZ6 A;  4TWF A;  4UM1 A;  4COF A;  1I9B A;  2QC1 B;  2WZY A;  1UX2 A;  4QH4 A;  2Y56 A;  5SYO A;  4XHE A;  4AFT A;  3PMZ A;  4BFQ A;  3TLS A;  3JAF A;  5IUX A;  4ZJT A;  2XQ9 A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

Application loaded.