5KE4A

Crystal structure of a chimeric acetylcholine binding protein from aplysia californica (ac-achbp) containing loop c from the human alpha 6 nicotinic acetylcholine receptor in complex with 2-((5-(3,7-diazabicyclo[3.3.1]nonan-3-yl)pyridin-3-yl)oxy)- n,n-dimethylethanamine (bpc)
Total Genus 52

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
52
sequence length
211
structure length
207
Chain Sequence
DDKLHSQANLMRLKSDLFNYPGPTKDDPLTVTLGFTLQDIVKADSSTNEVDLVYWEQQRWKLNSLMWDPNEYGNITDFRTSAADIWTPDITAYSSTRPVQVLSPQIAVVTHDGSVMFIPAQRLSFMCDPTGVDSEEGATCAVKFGSWVYSGFEIDLKTDTDQVDLSSYYASSKYEILSATQTKHDIKYNCCEEIYTDVNLVVKFRER

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYTI1 (24-27)S1 (29-44)TI10 (150-153)S11 (174-188)TI12 (165-168)TI2 (44-47)S2 (49-61)TI3 (45-48)TI6 (110-113)TI'1 (72-75)S3 (77-81)O1 (104-106)TI4 (81-84)S4 (90-92)S9 (138-146)S8 (120-126)TIV2 (92-95)S5 (100-101)S6 (106-110)S7 (114-117)TII1 (129-132)TI7 (131-134)S12 (191-206)TI8 (134-137)TI9 (146-149)S10 (154-157)TIV3 (158-161)TI13 (169-172)TVIII2 (172-175)3H1 (63-65)3H2 (69-71)AH1 (-3-15)Updating...
connected with : NaN
molecule tags Acetylcholine-binding protein
source organism Aplysia californica
publication title Crystal structure of a chimeric acetylcholine binding protein from Aplysia californica (Ac-AChBP) containing loop C from the human alpha 6 nicotinic acetylcholine receptor in complex with 2-((5-(3,7-Diazabicyclo[3.3.1]nonan-3-yl)pyridin-3-yl)oxy)- N,N-dimethylethanamine (BPC)
rcsb
molecule keywords Soluble acetylcholine receptor
total genus 52
structure length 207
sequence length 211
chains with identical sequence B, C, D, E
ec nomenclature
pdb deposition date 2016-06-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02931 Neur_chan_LBD Neurotransmitter-gated ion-channel ligand binding domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.70.170.10 Mainly Beta Distorted Sandwich Acetylcholine Binding Protein; Chain: A, Neurotransmitter-gated ion-channel ligand-binding domain 5ke4A00
2Y57A 1UW6A 5HEGA 3U8JA 3WTJA 3RHWA 3ZKRA 3UQ7A 1UV6A 3LSVA 5LXBA 4ZK1A 4LMLA 4LMJA 4QH4A 3ZDGA 3SH1A 3TLUA 5SYOA 3TLTA 2XQ3A 5HEOA 4ILBA 2WZYA 3U8MA 2UZ6A 2XQ7A 1I9BA 3C79A 3JADA 3T4MA 3U8LA 4BFQA 5HEJA 4PIRA 3WTLA 4WV9A 4DBMA 3RQWA 3IGQA 2C9TA 3P50A 2ZJVA 4AFHA 3TLWA 4BQTA 2BYPA 5HEHA 3UQ4A 5J0ZA 3PMZA 4ZR6A 5J5FA 2YMDA 3JAFA 4HFEA 4NZBA 5AFMB 5BP0A 4Z91A 2BG9B 5CFBA 3TLVA 3SQ6A 4UM3S 2XYTA 4ZZBA 2XYSA 4TWDA 4ZRUA 4ILAA 2Y7YA 4QAAA 2XNUA 5AFJA 4TWHA 4COFA 5IUXA 5L4EA 4ZJTA 4HFHA 2BYRA 4ZK4A 4ZZCA 4TNVA 2W8GA 4HQPA 4ALXA 5AFNA 4HFIA 4HFBA 5FJVA 2YMEA 2BYQA 4UXUA 5CO5A 3TLSA 2BJ0A 2ZJUA 2XQ4A 2QC1B 2XQAA 4IREA 3ZDHA 5KE4A 2YKSA 5J5IA 5J5HA 2XNTA 5HCMA 5JMEA 4LMKA 4QABA 4UM3P 5AFLA 4FRRA 3UU5A 4UY2A 3JAEA 2PGZA 3SQ9A 3UU8A 5AFHA 4ZJSA 3C84A 4HFDA 3UU3A 3GUAA 2XQ5A 4QH1A 2XQ9A 3U8NA 4EZ1A 5J5GA 5AINA 3PEOA 4QH5A 3WTMA 3UUBA 1UX2A 5L47A 5AFKA 4UM1A 2BG9E 5TVCA 5BRXA 2WNLA 2Y58A 2BR8A 4ILCA 4X5TA 3WTOA 2XQ6A 3WIPA 5BW2A 4IL4A 5HCJA 3UU6A 4XHEA 3P4WA 2YN6A 3RI5A 3RIAA 4TNWA 5AFMA 4A97A 2PH9A 2BG9A 2Y54A 4XK9A 3WTKA 4QACA 5KZUA 4IL9A 2XNVA 3EAMA 3U8KA 2VL0A 3EHZA 3RQUA 2W8FA 2X00D 4A98A 3WTHA 3EI0A 2XZ6A 3WTIA 2WNCA 2Y56A 5L4HA 5HEUA 2BYNA 2BG9C 2XQ8A 4D01A 4NPPA 4Z90A 5LG3A 4HFCA 2BYSA 4AFTA 2BR7A 3UU4A 3WTNA 4AFGA 2X00A 2XZ5A 4TWFA 4UM3A 2WNJA 4B5DA 4F8HA 3SIOA 2WN9A 2YOEA 3RIFA
chains in the Genus database with same CATH superfamily
2Y57A 1UW6A 5HEGA 3U8JA 3WTJA 3RHWA 3ZKRA 3UQ7A 1UV6A 3LSVA 5LXBA 4ZK1A 4LMLA 4LMJA 4QH4A 3ZDGA 3SH1A 3TLUA 5SYOA 3TLTA 2XQ3A 5HEOA 4ILBA 2WZYA 3U8MA 2UZ6A 2XQ7A 1I9BA 3C79A 3JADA 3T4MA 3U8LA 4BFQA 5HEJA 4PIRA 3WTLA 4WV9A 4DBMA 3RQWA 3IGQA 2C9TA 3P50A 2ZJVA 4AFHA 3TLWA 4BQTA 2BYPA 5HEHA 3UQ4A 5J0ZA 3PMZA 4ZR6A 5J5FA 2YMDA 3JAFA 4HFEA 4NZBA 5AFMB 5BP0A 4Z91A 2BG9B 5CFBA 3TLVA 3SQ6A 4UM3S 2XYTA 4ZZBA 2XYSA 4TWDA 4ZRUA 4ILAA 2Y7YA 4QAAA 2XNUA 5AFJA 4TWHA 4COFA 5IUXA 5L4EA 4ZJTA 4HFHA 2BYRA 4ZK4A 4ZZCA 4TNVA 2W8GA 4HQPA 4ALXA 5AFNA 4HFIA 4HFBA 5FJVA 2YMEA 2BYQA 4UXUA 5CO5A 3TLSA 2BJ0A 2ZJUA 2XQ4A 2QC1B 2XQAA 4IREA 3ZDHA 5KE4A 2YKSA 5J5IA 5J5HA 2XNTA 5HCMA 5JMEA 4LMKA 4QABA 4UM3P 5AFLA 4FRRA 3UU5A 4UY2A 3JAEA 2PGZA 3SQ9A 3UU8A 5AFHA 4ZJSA 3C84A 4HFDA 3UU3A 3GUAA 2XQ5A 4QH1A 2XQ9A 3U8NA 4EZ1A 5J5GA 5AINA 3PEOA 4QH5A 3WTMA 3UUBA 1UX2A 5L47A 5AFKA 4UM1A 2BG9E 5TVCA 5BRXA 2WNLA 2Y58A 2BR8A 4ILCA 4X5TA 3WTOA 2XQ6A 3WIPA 5BW2A 4IL4A 5HCJA 3UU6A 4XHEA 3P4WA 2YN6A 3RI5A 3RIAA 4TNWA 5AFMA 4A97A 2PH9A 2BG9A 2Y54A 4XK9A 3WTKA 4QACA 5KZUA 4IL9A 2XNVA 3EAMA 3U8KA 2VL0A 3EHZA 3RQUA 2W8FA 2X00D 4A98A 3WTHA 3EI0A 2XZ6A 3WTIA 2WNCA 2Y56A 5L4HA 5HEUA 2BYNA 2BG9C 2XQ8A 4D01A 4NPPA 4Z90A 5LG3A 4HFCA 2BYSA 4AFTA 2BR7A 3UU4A 3WTNA 4AFGA 2X00A 2XZ5A 4TWFA 4UM3A 2WNJA 4B5DA 4F8HA 3SIOA 2WN9A 2YOEA 3RIFA
chains in the Genus database with same CATH topology
2Y57A 1UW6A 5HEGA 3U8JA 3WTJA 3RHWA 3ZKRA 3UQ7A 1UV6A 3LSVA 5LXBA 4ZK1A 4LMLA 4LMJA 4QH4A 3ZDGA 3SH1A 3TLUA 5SYOA 3TLTA 2XQ3A 5HEOA 4ILBA 2WZYA 3U8MA 2UZ6A 2XQ7A 1I9BA 3C79A 3JADA 3T4MA 3U8LA 4BFQA 5HEJA 4PIRA 3WTLA 4WV9A 4DBMA 3RQWA 3IGQA 2C9TA 3P50A 2ZJVA 4AFHA 3TLWA 4BQTA 2BYPA 5HEHA 3UQ4A 5J0ZA 3PMZA 4ZR6A 5J5FA 2YMDA 3JAFA 4HFEA 4NZBA 5AFMB 5BP0A 4Z91A 2BG9B 5CFBA 3TLVA 3SQ6A 4UM3S 2XYTA 4ZZBA 2XYSA 4TWDA 4ZRUA 4ILAA 2Y7YA 4QAAA 2XNUA 5AFJA 4TWHA 4COFA 5IUXA 5L4EA 4ZJTA 4HFHA 2BYRA 4ZK4A 4ZZCA 4TNVA 2W8GA 4HQPA 4ALXA 5AFNA 4HFIA 4HFBA 5FJVA 2YMEA 2BYQA 4UXUA 5CO5A 3TLSA 2BJ0A 2ZJUA 2XQ4A 2QC1B 2XQAA 4IREA 3ZDHA 5KE4A 2YKSA 5J5IA 5J5HA 2XNTA 5HCMA 5JMEA 4LMKA 4QABA 4UM3P 5AFLA 4FRRA 3UU5A 4UY2A 3JAEA 2PGZA 3SQ9A 3UU8A 5AFHA 4ZJSA 3C84A 4HFDA 3UU3A 3GUAA 2XQ5A 4QH1A 2XQ9A 3U8NA 4EZ1A 5J5GA 5AINA 3PEOA 4QH5A 3WTMA 3UUBA 1UX2A 5L47A 5AFKA 4UM1A 2BG9E 5TVCA 5BRXA 2WNLA 2Y58A 2BR8A 4ILCA 4X5TA 3WTOA 2XQ6A 3WIPA 5BW2A 4IL4A 5HCJA 3UU6A 4XHEA 3P4WA 2YN6A 3RI5A 3RIAA 4TNWA 5AFMA 4A97A 2PH9A 2BG9A 2Y54A 4XK9A 3WTKA 4QACA 5KZUA 4IL9A 2XNVA 3EAMA 3U8KA 2VL0A 3EHZA 3RQUA 2W8FA 2X00D 4A98A 3WTHA 3EI0A 2XZ6A 3WTIA 2WNCA 2Y56A 5L4HA 5HEUA 2BYNA 2BG9C 2XQ8A 4D01A 4NPPA 4Z90A 5LG3A 4HFCA 2BYSA 4AFTA 2BR7A 3UU4A 3WTNA 4AFGA 2X00A 2XZ5A 4TWFA 4UM3A 2WNJA 4B5DA 4F8HA 3SIOA 2WN9A 2YOEA 3RIFA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2Y57 A;  1UW6 A;  5HEG A;  3U8J A;  3WTJ A;  3RHW A;  3ZKR A;  3UQ7 A;  1UV6 A;  3LSV A;  5LXB A;  4ZK1 A;  4LML A;  4LMJ A;  4QH4 A;  3ZDG A;  3SH1 A;  3TLU A;  5SYO A;  3TLT A;  2XQ3 A;  5HEO A;  4ILB A;  2WZY A;  3U8M A;  2UZ6 A;  2XQ7 A;  1I9B A;  3C79 A;  3JAD A;  3T4M A;  3U8L A;  4BFQ A;  5HEJ A;  4PIR A;  3WTL A;  4WV9 A;  4DBM A;  3RQW A;  3IGQ A;  2C9T A;  3P50 A;  2ZJV A;  4AFH A;  3TLW A;  4BQT A;  2BYP A;  5HEH A;  3UQ4 A;  5J0Z A;  3PMZ A;  4ZR6 A;  5J5F A;  2YMD A;  3JAF A;  4HFE A;  4NZB A;  5AFM B;  5BP0 A;  4Z91 A;  2BG9 B;  5CFB A;  3TLV A;  3SQ6 A;  4UM3 S;  2XYT A;  4ZZB A;  2XYS A;  4TWD A;  4ZRU A;  4ILA A;  2Y7Y A;  4QAA A;  2XNU A;  5AFJ A;  4TWH A;  4COF A;  5IUX A;  5L4E A;  4ZJT A;  4HFH A;  2BYR A;  4ZK4 A;  4ZZC A;  4TNV A;  2W8G A;  4HQP A;  4ALX A;  5AFN A;  4HFI A;  4HFB A;  5FJV A;  2YME A;  2BYQ A;  4UXU A;  5CO5 A;  3TLS A;  2BJ0 A;  2ZJU A;  2XQ4 A;  2QC1 B;  2XQA A;  4IRE A;  3ZDH A;  5KE4 A;  2YKS A;  5J5I A;  5J5H A;  2XNT A;  5HCM A;  5JME A;  4LMK A;  4QAB A;  4UM3 P;  5AFL A;  4FRR A;  3UU5 A;  4UY2 A;  3JAE A;  2PGZ A;  3SQ9 A;  3UU8 A;  5AFH A;  4ZJS A;  3C84 A;  4HFD A;  3UU3 A;  3GUA A;  2XQ5 A;  4QH1 A;  2XQ9 A;  3U8N A;  4EZ1 A;  5J5G A;  5AIN A;  3PEO A;  4QH5 A;  3WTM A;  3UUB A;  1UX2 A;  5L47 A;  5AFK A;  4UM1 A;  2BG9 E;  5TVC A;  5BRX A;  2WNL A;  2Y58 A;  2BR8 A;  4ILC A;  4X5T A;  3WTO A;  2XQ6 A;  3WIP A;  5BW2 A;  4IL4 A;  5HCJ A;  3UU6 A;  4XHE A;  3P4W A;  2YN6 A;  3RI5 A;  3RIA A;  4TNW A;  5AFM A;  4A97 A;  2PH9 A;  2BG9 A;  2Y54 A;  4XK9 A;  3WTK A;  4QAC A;  5KZU A;  4IL9 A;  2XNV A;  3EAM A;  3U8K A;  2VL0 A;  3EHZ A;  3RQU A;  2W8F A;  2X00 D;  4A98 A;  3WTH A;  3EI0 A;  2XZ6 A;  3WTI A;  2WNC A;  2Y56 A;  5L4H A;  5HEU A;  2BYN A;  2BG9 C;  2XQ8 A;  4D01 A;  4NPP A;  4Z90 A;  5LG3 A;  4HFC A;  2BYS A;  4AFT A;  2BR7 A;  3UU4 A;  3WTN A;  4AFG A;  2X00 A;  2XZ5 A;  4TWF A;  4UM3 A;  2WNJ A;  4B5D A;  4F8H A;  3SIO A;  2WN9 A;  2YOE A;  3RIF A; 
#chains in the Genus database with same CATH topology
 2Y57 A;  1UW6 A;  5HEG A;  3U8J A;  3WTJ A;  3RHW A;  3ZKR A;  3UQ7 A;  1UV6 A;  3LSV A;  5LXB A;  4ZK1 A;  4LML A;  4LMJ A;  4QH4 A;  3ZDG A;  3SH1 A;  3TLU A;  5SYO A;  3TLT A;  2XQ3 A;  5HEO A;  4ILB A;  2WZY A;  3U8M A;  2UZ6 A;  2XQ7 A;  1I9B A;  3C79 A;  3JAD A;  3T4M A;  3U8L A;  4BFQ A;  5HEJ A;  4PIR A;  3WTL A;  4WV9 A;  4DBM A;  3RQW A;  3IGQ A;  2C9T A;  3P50 A;  2ZJV A;  4AFH A;  3TLW A;  4BQT A;  2BYP A;  5HEH A;  3UQ4 A;  5J0Z A;  3PMZ A;  4ZR6 A;  5J5F A;  2YMD A;  3JAF A;  4HFE A;  4NZB A;  5AFM B;  5BP0 A;  4Z91 A;  2BG9 B;  5CFB A;  3TLV A;  3SQ6 A;  4UM3 S;  2XYT A;  4ZZB A;  2XYS A;  4TWD A;  4ZRU A;  4ILA A;  2Y7Y A;  4QAA A;  2XNU A;  5AFJ A;  4TWH A;  4COF A;  5IUX A;  5L4E A;  4ZJT A;  4HFH A;  2BYR A;  4ZK4 A;  4ZZC A;  4TNV A;  2W8G A;  4HQP A;  4ALX A;  5AFN A;  4HFI A;  4HFB A;  5FJV A;  2YME A;  2BYQ A;  4UXU A;  5CO5 A;  3TLS A;  2BJ0 A;  2ZJU A;  2XQ4 A;  2QC1 B;  2XQA A;  4IRE A;  3ZDH A;  5KE4 A;  2YKS A;  5J5I A;  5J5H A;  2XNT A;  5HCM A;  5JME A;  4LMK A;  4QAB A;  4UM3 P;  5AFL A;  4FRR A;  3UU5 A;  4UY2 A;  3JAE A;  2PGZ A;  3SQ9 A;  3UU8 A;  5AFH A;  4ZJS A;  3C84 A;  4HFD A;  3UU3 A;  3GUA A;  2XQ5 A;  4QH1 A;  2XQ9 A;  3U8N A;  4EZ1 A;  5J5G A;  5AIN A;  3PEO A;  4QH5 A;  3WTM A;  3UUB A;  1UX2 A;  5L47 A;  5AFK A;  4UM1 A;  2BG9 E;  5TVC A;  5BRX A;  2WNL A;  2Y58 A;  2BR8 A;  4ILC A;  4X5T A;  3WTO A;  2XQ6 A;  3WIP A;  5BW2 A;  4IL4 A;  5HCJ A;  3UU6 A;  4XHE A;  3P4W A;  2YN6 A;  3RI5 A;  3RIA A;  4TNW A;  5AFM A;  4A97 A;  2PH9 A;  2BG9 A;  2Y54 A;  4XK9 A;  3WTK A;  4QAC A;  5KZU A;  4IL9 A;  2XNV A;  3EAM A;  3U8K A;  2VL0 A;  3EHZ A;  3RQU A;  2W8F A;  2X00 D;  4A98 A;  3WTH A;  3EI0 A;  2XZ6 A;  3WTI A;  2WNC A;  2Y56 A;  5L4H A;  5HEU A;  2BYN A;  2BG9 C;  2XQ8 A;  4D01 A;  4NPP A;  4Z90 A;  5LG3 A;  4HFC A;  2BYS A;  4AFT A;  2BR7 A;  3UU4 A;  3WTN A;  4AFG A;  2X00 A;  2XZ5 A;  4TWF A;  4UM3 A;  2WNJ A;  4B5D A;  4F8H A;  3SIO A;  2WN9 A;  2YOE A;  3RIF A; 
#chains in the Genus database with same CATH homology
 2Y57 A;  1UW6 A;  5HEG A;  3U8J A;  3WTJ A;  3RHW A;  3ZKR A;  3UQ7 A;  1UV6 A;  3LSV A;  5LXB A;  4ZK1 A;  4LML A;  4LMJ A;  4QH4 A;  3ZDG A;  3SH1 A;  3TLU A;  5SYO A;  3TLT A;  2XQ3 A;  5HEO A;  4ILB A;  2WZY A;  3U8M A;  2UZ6 A;  2XQ7 A;  1I9B A;  3C79 A;  3JAD A;  3T4M A;  3U8L A;  4BFQ A;  5HEJ A;  4PIR A;  3WTL A;  4WV9 A;  4DBM A;  3RQW A;  3IGQ A;  2C9T A;  3P50 A;  2ZJV A;  4AFH A;  3TLW A;  4BQT A;  2BYP A;  5HEH A;  3UQ4 A;  5J0Z A;  3PMZ A;  4ZR6 A;  5J5F A;  2YMD A;  3JAF A;  4HFE A;  4NZB A;  5AFM B;  5BP0 A;  4Z91 A;  2BG9 B;  5CFB A;  3TLV A;  3SQ6 A;  4UM3 S;  2XYT A;  4ZZB A;  2XYS A;  4TWD A;  4ZRU A;  4ILA A;  2Y7Y A;  4QAA A;  2XNU A;  5AFJ A;  4TWH A;  4COF A;  5IUX A;  5L4E A;  4ZJT A;  4HFH A;  2BYR A;  4ZK4 A;  4ZZC A;  4TNV A;  2W8G A;  4HQP A;  4ALX A;  5AFN A;  4HFI A;  4HFB A;  5FJV A;  2YME A;  2BYQ A;  4UXU A;  5CO5 A;  3TLS A;  2BJ0 A;  2ZJU A;  2XQ4 A;  2QC1 B;  2XQA A;  4IRE A;  3ZDH A;  5KE4 A;  2YKS A;  5J5I A;  5J5H A;  2XNT A;  5HCM A;  5JME A;  4LMK A;  4QAB A;  4UM3 P;  5AFL A;  4FRR A;  3UU5 A;  4UY2 A;  3JAE A;  2PGZ A;  3SQ9 A;  3UU8 A;  5AFH A;  4ZJS A;  3C84 A;  4HFD A;  3UU3 A;  3GUA A;  2XQ5 A;  4QH1 A;  2XQ9 A;  3U8N A;  4EZ1 A;  5J5G A;  5AIN A;  3PEO A;  4QH5 A;  3WTM A;  3UUB A;  1UX2 A;  5L47 A;  5AFK A;  4UM1 A;  2BG9 E;  5TVC A;  5BRX A;  2WNL A;  2Y58 A;  2BR8 A;  4ILC A;  4X5T A;  3WTO A;  2XQ6 A;  3WIP A;  5BW2 A;  4IL4 A;  5HCJ A;  3UU6 A;  4XHE A;  3P4W A;  2YN6 A;  3RI5 A;  3RIA A;  4TNW A;  5AFM A;  4A97 A;  2PH9 A;  2BG9 A;  2Y54 A;  4XK9 A;  3WTK A;  4QAC A;  5KZU A;  4IL9 A;  2XNV A;  3EAM A;  3U8K A;  2VL0 A;  3EHZ A;  3RQU A;  2W8F A;  2X00 D;  4A98 A;  3WTH A;  3EI0 A;  2XZ6 A;  3WTI A;  2WNC A;  2Y56 A;  5L4H A;  5HEU A;  2BYN A;  2BG9 C;  2XQ8 A;  4D01 A;  4NPP A;  4Z90 A;  5LG3 A;  4HFC A;  2BYS A;  4AFT A;  2BR7 A;  3UU4 A;  3WTN A;  4AFG A;  2X00 A;  2XZ5 A;  4TWF A;  4UM3 A;  2WNJ A;  4B5D A;  4F8H A;  3SIO A;  2WN9 A;  2YOE A;  3RIF A; 
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similar chains in the Genus database (?% sequence similarity)
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