2GU4A

E. coli methionine aminopeptidase in complex with nlep, 1: 0.5, di-metalated
Total Genus 91
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
91
sequence length
261
structure length
261
Chain Sequence
SIKTPEDIEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGYHGYPKSVCISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTIMGERLCRITQESLYLALRMVKPGINLREIGAAIQKFVEAEGFSVVREYCGHGIGRGFHEEPQVLHYDSRETNVVLKPGMTFTIEPMVNAGKKEIRTMKDGWTVKTKDRSLSAQYEHTIVVTDNGCEILTLRKDDTIPAIISHDE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Methionine aminopeptidase
publication title Structural basis of catalysis by monometalated methionine aminopeptidase.
pubmed doi rcsb
source organism Escherichia coli
molecule tags Hydrolase
total genus 91
structure length 261
sequence length 261
chains with identical sequence B
ec nomenclature ec 3.4.11.18: Methionyl aminopeptidase.
pdb deposition date 2006-04-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00557 Peptidase_M24 Metallopeptidase family M24
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.230.10 Alpha Beta Alpha-Beta Complex Creatine Amidinohydrolase Creatinase/methionine aminopeptidase superfamily 2gu4A00
1Y1NA 2V6CA 3BIPA 4A6WA 1B6AA 3IU7A 4FKCA 5D6EA 3IU8A 3PKBA 3S6BA 4FLKA 3IU9A 4IECA 2P9AA 5CLSA 2EVCA 2B3HA 3BITA 4U75A 1BN5A 1YW8A 2GU6A 4A6VA 1WBQA 2BH3A 5D6FA 2OAZA 2BHCA 4U1BA 2P99A 4RZYA 2B3KA 5CE6A 1XGMA 3FMRA 3MATA 4KM3A 2GZ5A 1WN1A 2BHDA 1WLRA 4IKTA 4S01A 4IKSA 3Q6DA 4PNCA 4U71A 2BWVA 4U6WA 1CHMA 4FO7A 4FUKA 4IDYA 1C27A 2EA2A 2GU5A 1YW7A 3FMQA 4U70A 1C24A 2BHBA 3IG4A 2BWSA 1WL9A 2V3XA 1BOAA 4FLJA 3BIQA 2BB7A 2GU7A 4S2RP 5CDLA 4RZZA 2EA4A 1XGOA 4IKRA 4ZNGA 5FCFA 1QXZA 4U69A 5JHUA 1C22A 3CB5A 4FLIA 2ZSGA 2GG3A 3D27A 2GG2A 4U73A 1JAWA 2V3ZA 3FM3A 1PV9A 3L7GA 2BWYA 4HXXA 1WL6A 4EGEA 2BWTA 2GGBA 4ZWOA 5FCHA 1XGSA 4IKUA 1YVMA 2GG5A 2GG0A 1WKMA 1A16A 2GGCA 3MX6A 4FLLA 5CDEA 2Q8KA 2BWXA 4IF7A 4OOKA 4Z7MA 2GG8A 3CTZA 2NQ6A 3RORA 4MATA 3TAVA 1KP0A 3PKDA 2MATA 4RGZ1 1C23A 2IW2A 2BWWA 2Q92A 3RVAA 3PKAA 1YJ3A 4S2TP 5E5BA 4IU6A 4U6ZA 4U6JA 2BWUA 5CDVA 3PKEA 3PKCA 4JUQA 1C21A 1W7VA 5CIKA 2HOWA 4ZWPA 1R5HA 1YW9A 2GA2A 2P98A 1R5GA 1QXWA 1KQ9A 2V3YA 2GG9A 2BN7A 4B28A 2NQ7A 4PV4A 1QXYA 1R58A 1B59A 2EVOA 1N51A 2DFIA 2GU4A 1XGNA 4U6EA 4IPAA 2Q95A 1MATA 4FO8A 3CB6A 2OKNA 5JFRA 4QR8A 2G6PA 2GTXA 2ADUA 3L24A 4S00A 1M35A 4R60A 2Q96A 1W2MA 5JI6A 2BHAA 2GG7A 2Q94A 1WY2A 4ZWUA 2Q93A 1QZYA 5CNXA 2B3LA 4U76A 1XNZA 3TB5A 1O0XA 1KQ0A 2EVMA 4U6CA 3MR1A
chains in the Genus database with same CATH superfamily
1Y1NA 2V6CA 3BIPA 4A6WA 1B6AA 3IU7A 4FKCA 5D6EA 3IU8A 3PKBA 3S6BA 4FLKA 3IU9A 4IECA 2P9AA 5CLSA 2EVCA 2B3HA 3BITA 4U75A 1BN5A 1YW8A 2GU6A 4A6VA 1WBQA 2BH3A 5D6FA 2OAZA 2BHCA 4U1BA 2P99A 4RZYA 2B3KA 5CE6A 1XGMA 3FMRA 3MATA 4KM3A 2GZ5A 1WN1A 2BHDA 1WLRA 4IKTA 4S01A 4IKSA 3Q6DA 4PNCA 4U71A 2BWVA 4U6WA 1CHMA 4FO7A 4FUKA 4IDYA 1C27A 2EA2A 2GU5A 1YW7A 3FMQA 4U70A 1C24A 2BHBA 3IG4A 2BWSA 1WL9A 2V3XA 1BOAA 4FLJA 3BIQA 2BB7A 2GU7A 4S2RP 5CDLA 4RZZA 2EA4A 1XGOA 4IKRA 4ZNGA 5FCFA 1QXZA 4U69A 5JHUA 1C22A 3CB5A 4FLIA 2ZSGA 2GG3A 3D27A 2GG2A 4U73A 1JAWA 2V3ZA 3FM3A 1PV9A 3L7GA 2BWYA 4HXXA 1WL6A 4EGEA 2BWTA 2GGBA 4ZWOA 5FCHA 1XGSA 4IKUA 1YVMA 2GG5A 2GG0A 1WKMA 1A16A 2GGCA 3MX6A 4FLLA 5CDEA 2Q8KA 2BWXA 4IF7A 4OOKA 4Z7MA 2GG8A 3CTZA 2NQ6A 3RORA 4MATA 3TAVA 1KP0A 3PKDA 2MATA 4RGZ1 1C23A 2IW2A 2BWWA 2Q92A 3RVAA 3PKAA 1YJ3A 4S2TP 5E5BA 4IU6A 4U6ZA 4U6JA 2BWUA 5CDVA 3PKEA 3PKCA 4JUQA 1C21A 1W7VA 5CIKA 2HOWA 4ZWPA 1R5HA 1YW9A 2GA2A 2P98A 1R5GA 1QXWA 1KQ9A 2V3YA 2GG9A 2BN7A 4B28A 2NQ7A 4PV4A 1QXYA 1R58A 1B59A 2EVOA 1N51A 2DFIA 2GU4A 1XGNA 4U6EA 4IPAA 2Q95A 1MATA 4FO8A 3CB6A 2OKNA 5JFRA 4QR8A 2G6PA 2GTXA 2ADUA 3L24A 4S00A 1M35A 4R60A 2Q96A 1W2MA 5JI6A 2BHAA 2GG7A 2Q94A 1WY2A 4ZWUA 2Q93A 1QZYA 5CNXA 2B3LA 4U76A 1XNZA 3TB5A 1O0XA 1KQ0A 2EVMA 4U6CA 3MR1A
chains in the Genus database with same CATH topology
1Y1NA 2V6CA 3BIPA 4A6WA 1B6AA 3IU7A 4FKCA 5D6EA 3IU8A 3PKBA 3S6BA 4FLKA 3IU9A 4IECA 2P9AA 5CLSA 2EVCA 2B3HA 3BITA 4U75A 1BN5A 1YW8A 2GU6A 4A6VA 1WBQA 2BH3A 5D6FA 2OAZA 2BHCA 4U1BA 2P99A 4RZYA 2B3KA 5CE6A 1XGMA 3FMRA 3MATA 4KM3A 2GZ5A 1WN1A 2BHDA 1WLRA 4IKTA 4S01A 4IKSA 3Q6DA 4PNCA 4U71A 2BWVA 4U6WA 1CHMA 4FO7A 4FUKA 4IDYA 1C27A 2EA2A 2GU5A 1YW7A 3FMQA 4U70A 1C24A 2BHBA 3IG4A 2BWSA 1WL9A 2V3XA 1BOAA 4FLJA 3BIQA 2BB7A 2GU7A 4S2RP 5CDLA 4RZZA 2EA4A 1XGOA 4IKRA 4ZNGA 5FCFA 1QXZA 4U69A 5JHUA 1C22A 3CB5A 4FLIA 2ZSGA 2GG3A 3D27A 2GG2A 4U73A 1JAWA 2V3ZA 3FM3A 1PV9A 3L7GA 2BWYA 4HXXA 1WL6A 4EGEA 2BWTA 2GGBA 4ZWOA 5FCHA 1XGSA 4IKUA 1YVMA 2GG5A 2GG0A 1WKMA 1A16A 2GGCA 3MX6A 4FLLA 5CDEA 2Q8KA 2BWXA 4IF7A 4OOKA 4Z7MA 2GG8A 3CTZA 2NQ6A 3RORA 4MATA 3TAVA 1KP0A 3PKDA 2MATA 4RGZ1 1C23A 2IW2A 2BWWA 2Q92A 3RVAA 3PKAA 1YJ3A 4S2TP 5E5BA 4IU6A 4U6ZA 4U6JA 2BWUA 5CDVA 3PKEA 3PKCA 4JUQA 1C21A 1W7VA 5CIKA 2HOWA 4ZWPA 1R5HA 1YW9A 2GA2A 2P98A 1R5GA 1QXWA 1KQ9A 2V3YA 2GG9A 2BN7A 4B28A 2NQ7A 4PV4A 1QXYA 1R58A 1B59A 2EVOA 1N51A 2DFIA 2GU4A 1XGNA 4U6EA 4IPAA 2Q95A 1MATA 4FO8A 3CB6A 2OKNA 5JFRA 4QR8A 2G6PA 2GTXA 2ADUA 3L24A 4S00A 1M35A 4R60A 2Q96A 1W2MA 5JI6A 2BHAA 2GG7A 2Q94A 1WY2A 4ZWUA 2Q93A 1QZYA 5CNXA 2B3LA 4U76A 1XNZA 3TB5A 1O0XA 1KQ0A 2EVMA 4U6CA 3MR1A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1Y1N A;  2V6C A;  3BIP A;  4A6W A;  1B6A A;  3IU7 A;  4FKC A;  5D6E A;  3IU8 A;  3PKB A;  3S6B A;  4FLK A;  3IU9 A;  4IEC A;  2P9A A;  5CLS A;  2EVC A;  2B3H A;  3BIT A;  4U75 A;  1BN5 A;  1YW8 A;  2GU6 A;  4A6V A;  1WBQ A;  2BH3 A;  5D6F A;  2OAZ A;  2BHC A;  4U1B A;  2P99 A;  4RZY A;  2B3K A;  5CE6 A;  1XGM A;  3FMR A;  3MAT A;  4KM3 A;  2GZ5 A;  1WN1 A;  2BHD A;  1WLR A;  4IKT A;  4S01 A;  4IKS A;  3Q6D A;  4PNC A;  4U71 A;  2BWV A;  4U6W A;  1CHM A;  4FO7 A;  4FUK A;  4IDY A;  1C27 A;  2EA2 A;  2GU5 A;  1YW7 A;  3FMQ A;  4U70 A;  1C24 A;  2BHB A;  3IG4 A;  2BWS A;  1WL9 A;  2V3X A;  1BOA A;  4FLJ A;  3BIQ A;  2BB7 A;  2GU7 A;  4S2R P;  5CDL A;  4RZZ A;  2EA4 A;  1XGO A;  4IKR A;  4ZNG A;  5FCF A;  1QXZ A;  4U69 A;  5JHU A;  1C22 A;  3CB5 A;  4FLI A;  2ZSG A;  2GG3 A;  3D27 A;  2GG2 A;  4U73 A;  1JAW A;  2V3Z A;  3FM3 A;  1PV9 A;  3L7G A;  2BWY A;  4HXX A;  1WL6 A;  4EGE A;  2BWT A;  2GGB A;  4ZWO A;  5FCH A;  1XGS A;  4IKU A;  1YVM A;  2GG5 A;  2GG0 A;  1WKM A;  1A16 A;  2GGC A;  3MX6 A;  4FLL A;  5CDE A;  2Q8K A;  2BWX A;  4IF7 A;  4OOK A;  4Z7M A;  2GG8 A;  3CTZ A;  2NQ6 A;  3ROR A;  4MAT A;  3TAV A;  1KP0 A;  3PKD A;  2MAT A;  4RGZ 1;  1C23 A;  2IW2 A;  2BWW A;  2Q92 A;  3RVA A;  3PKA A;  1YJ3 A;  4S2T P;  5E5B A;  4IU6 A;  4U6Z A;  4U6J A;  2BWU A;  5CDV A;  3PKE A;  3PKC A;  4JUQ A;  1C21 A;  1W7V A;  5CIK A;  2HOW A;  4ZWP A;  1R5H A;  1YW9 A;  2GA2 A;  2P98 A;  1R5G A;  1QXW A;  1KQ9 A;  2V3Y A;  2GG9 A;  2BN7 A;  4B28 A;  2NQ7 A;  4PV4 A;  1QXY A;  1R58 A;  1B59 A;  2EVO A;  1N51 A;  2DFI A;  2GU4 A;  1XGN A;  4U6E A;  4IPA A;  2Q95 A;  1MAT A;  4FO8 A;  3CB6 A;  2OKN A;  5JFR A;  4QR8 A;  2G6P A;  2GTX A;  2ADU A;  3L24 A;  4S00 A;  1M35 A;  4R60 A;  2Q96 A;  1W2M A;  5JI6 A;  2BHA A;  2GG7 A;  2Q94 A;  1WY2 A;  4ZWU A;  2Q93 A;  1QZY A;  5CNX A;  2B3L A;  4U76 A;  1XNZ A;  3TB5 A;  1O0X A;  1KQ0 A;  2EVM A;  4U6C A;  3MR1 A; 
#chains in the Genus database with same CATH topology
 1Y1N A;  2V6C A;  3BIP A;  4A6W A;  1B6A A;  3IU7 A;  4FKC A;  5D6E A;  3IU8 A;  3PKB A;  3S6B A;  4FLK A;  3IU9 A;  4IEC A;  2P9A A;  5CLS A;  2EVC A;  2B3H A;  3BIT A;  4U75 A;  1BN5 A;  1YW8 A;  2GU6 A;  4A6V A;  1WBQ A;  2BH3 A;  5D6F A;  2OAZ A;  2BHC A;  4U1B A;  2P99 A;  4RZY A;  2B3K A;  5CE6 A;  1XGM A;  3FMR A;  3MAT A;  4KM3 A;  2GZ5 A;  1WN1 A;  2BHD A;  1WLR A;  4IKT A;  4S01 A;  4IKS A;  3Q6D A;  4PNC A;  4U71 A;  2BWV A;  4U6W A;  1CHM A;  4FO7 A;  4FUK A;  4IDY A;  1C27 A;  2EA2 A;  2GU5 A;  1YW7 A;  3FMQ A;  4U70 A;  1C24 A;  2BHB A;  3IG4 A;  2BWS A;  1WL9 A;  2V3X A;  1BOA A;  4FLJ A;  3BIQ A;  2BB7 A;  2GU7 A;  4S2R P;  5CDL A;  4RZZ A;  2EA4 A;  1XGO A;  4IKR A;  4ZNG A;  5FCF A;  1QXZ A;  4U69 A;  5JHU A;  1C22 A;  3CB5 A;  4FLI A;  2ZSG A;  2GG3 A;  3D27 A;  2GG2 A;  4U73 A;  1JAW A;  2V3Z A;  3FM3 A;  1PV9 A;  3L7G A;  2BWY A;  4HXX A;  1WL6 A;  4EGE A;  2BWT A;  2GGB A;  4ZWO A;  5FCH A;  1XGS A;  4IKU A;  1YVM A;  2GG5 A;  2GG0 A;  1WKM A;  1A16 A;  2GGC A;  3MX6 A;  4FLL A;  5CDE A;  2Q8K A;  2BWX A;  4IF7 A;  4OOK A;  4Z7M A;  2GG8 A;  3CTZ A;  2NQ6 A;  3ROR A;  4MAT A;  3TAV A;  1KP0 A;  3PKD A;  2MAT A;  4RGZ 1;  1C23 A;  2IW2 A;  2BWW A;  2Q92 A;  3RVA A;  3PKA A;  1YJ3 A;  4S2T P;  5E5B A;  4IU6 A;  4U6Z A;  4U6J A;  2BWU A;  5CDV A;  3PKE A;  3PKC A;  4JUQ A;  1C21 A;  1W7V A;  5CIK A;  2HOW A;  4ZWP A;  1R5H A;  1YW9 A;  2GA2 A;  2P98 A;  1R5G A;  1QXW A;  1KQ9 A;  2V3Y A;  2GG9 A;  2BN7 A;  4B28 A;  2NQ7 A;  4PV4 A;  1QXY A;  1R58 A;  1B59 A;  2EVO A;  1N51 A;  2DFI A;  2GU4 A;  1XGN A;  4U6E A;  4IPA A;  2Q95 A;  1MAT A;  4FO8 A;  3CB6 A;  2OKN A;  5JFR A;  4QR8 A;  2G6P A;  2GTX A;  2ADU A;  3L24 A;  4S00 A;  1M35 A;  4R60 A;  2Q96 A;  1W2M A;  5JI6 A;  2BHA A;  2GG7 A;  2Q94 A;  1WY2 A;  4ZWU A;  2Q93 A;  1QZY A;  5CNX A;  2B3L A;  4U76 A;  1XNZ A;  3TB5 A;  1O0X A;  1KQ0 A;  2EVM A;  4U6C A;  3MR1 A; 
#chains in the Genus database with same CATH homology
 1Y1N A;  2V6C A;  3BIP A;  4A6W A;  1B6A A;  3IU7 A;  4FKC A;  5D6E A;  3IU8 A;  3PKB A;  3S6B A;  4FLK A;  3IU9 A;  4IEC A;  2P9A A;  5CLS A;  2EVC A;  2B3H A;  3BIT A;  4U75 A;  1BN5 A;  1YW8 A;  2GU6 A;  4A6V A;  1WBQ A;  2BH3 A;  5D6F A;  2OAZ A;  2BHC A;  4U1B A;  2P99 A;  4RZY A;  2B3K A;  5CE6 A;  1XGM A;  3FMR A;  3MAT A;  4KM3 A;  2GZ5 A;  1WN1 A;  2BHD A;  1WLR A;  4IKT A;  4S01 A;  4IKS A;  3Q6D A;  4PNC A;  4U71 A;  2BWV A;  4U6W A;  1CHM A;  4FO7 A;  4FUK A;  4IDY A;  1C27 A;  2EA2 A;  2GU5 A;  1YW7 A;  3FMQ A;  4U70 A;  1C24 A;  2BHB A;  3IG4 A;  2BWS A;  1WL9 A;  2V3X A;  1BOA A;  4FLJ A;  3BIQ A;  2BB7 A;  2GU7 A;  4S2R P;  5CDL A;  4RZZ A;  2EA4 A;  1XGO A;  4IKR A;  4ZNG A;  5FCF A;  1QXZ A;  4U69 A;  5JHU A;  1C22 A;  3CB5 A;  4FLI A;  2ZSG A;  2GG3 A;  3D27 A;  2GG2 A;  4U73 A;  1JAW A;  2V3Z A;  3FM3 A;  1PV9 A;  3L7G A;  2BWY A;  4HXX A;  1WL6 A;  4EGE A;  2BWT A;  2GGB A;  4ZWO A;  5FCH A;  1XGS A;  4IKU A;  1YVM A;  2GG5 A;  2GG0 A;  1WKM A;  1A16 A;  2GGC A;  3MX6 A;  4FLL A;  5CDE A;  2Q8K A;  2BWX A;  4IF7 A;  4OOK A;  4Z7M A;  2GG8 A;  3CTZ A;  2NQ6 A;  3ROR A;  4MAT A;  3TAV A;  1KP0 A;  3PKD A;  2MAT A;  4RGZ 1;  1C23 A;  2IW2 A;  2BWW A;  2Q92 A;  3RVA A;  3PKA A;  1YJ3 A;  4S2T P;  5E5B A;  4IU6 A;  4U6Z A;  4U6J A;  2BWU A;  5CDV A;  3PKE A;  3PKC A;  4JUQ A;  1C21 A;  1W7V A;  5CIK A;  2HOW A;  4ZWP A;  1R5H A;  1YW9 A;  2GA2 A;  2P98 A;  1R5G A;  1QXW A;  1KQ9 A;  2V3Y A;  2GG9 A;  2BN7 A;  4B28 A;  2NQ7 A;  4PV4 A;  1QXY A;  1R58 A;  1B59 A;  2EVO A;  1N51 A;  2DFI A;  2GU4 A;  1XGN A;  4U6E A;  4IPA A;  2Q95 A;  1MAT A;  4FO8 A;  3CB6 A;  2OKN A;  5JFR A;  4QR8 A;  2G6P A;  2GTX A;  2ADU A;  3L24 A;  4S00 A;  1M35 A;  4R60 A;  2Q96 A;  1W2M A;  5JI6 A;  2BHA A;  2GG7 A;  2Q94 A;  1WY2 A;  4ZWU A;  2Q93 A;  1QZY A;  5CNX A;  2B3L A;  4U76 A;  1XNZ A;  3TB5 A;  1O0X A;  1KQ0 A;  2EVM A;  4U6C A;  3MR1 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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