2GU4A

E. coli methionine aminopeptidase in complex with nlep, 1: 0.5, di-metalated
Total Genus 91
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
91
sequence length
261
structure length
261
Chain Sequence
SIKTPEDIEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGYHGYPKSVCISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTIMGERLCRITQESLYLALRMVKPGINLREIGAAIQKFVEAEGFSVVREYCGHGIGRGFHEEPQVLHYDSRETNVVLKPGMTFTIEPMVNAGKKEIRTMKDGWTVKTKDRSLSAQYEHTIVVTDNGCEILTLRKDDTIPAIISHDE
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
source organism Escherichia coli
publication title Structural basis of catalysis by monometalated methionine aminopeptidase.
pubmed doi rcsb
molecule keywords Methionine aminopeptidase
total genus 91
structure length 261
sequence length 261
chains with identical sequence B
ec nomenclature ec 3.4.11.18: Methionyl aminopeptidase.
pdb deposition date 2006-04-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00557 Peptidase_M24 Metallopeptidase family M24
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.230.10 Alpha Beta Alpha-Beta Complex Creatine Amidinohydrolase Creatinase/methionine aminopeptidase superfamily 2gu4A00
1YW8A 2OAZA 1C23A 2ADUA 4IPAA 4MATA 2EVOA 1WKMA 4HXXA 2BHDA 1BN5A 3FM3A 5CDVA 2GU5A 2P9AA 2G6PA 2BHCA 4U76A 4ZNGA 5JHUA 2B3KA 1XGNA 4IF7A 3PKDA 4PNCA 4IKRA 1R58A 1QXZA 2BHAA 1QXYA 2BN7A 2P98A 2GGBA 3PKBA 4RZZA 3D27A 3TAVA 5JI6A 3MX6A 1YJ3A 4U6CA 1R5GA 1C27A 1C22A 3BIPA 3TB5A 2EA4A 1WBQA 4Z7MA 1YVMA 4FO7A 3IG4A 1M35A 4IKSA 5CE6A 2BB7A 2Q96A 2Q93A 4U6WA 2BWXA 3RORA 5E5BA 2GZ5A 1YW9A 5CIKA 4IECA 2Q95A 4IDYA 2GG0A 2Q94A 2EVMA 2BWTA 3CB5A 1WN1A 2EVCA 2IW2A 2BWSA 3IU8A 4U1BA 4S01A 4A6VA 2GGCA 2GG7A 1B59A 1QXWA 1WY2A 3IU7A 5D6FA 4FLLA 1W2MA 2BWVA 2P99A 4FKCA 4U6JA 5FCFA 2V3XA 3FMRA 4RZYA 1MATA 4IU6A 1XGOA 5CDEA 2V3YA 2GG9A 4S2TP 4U71A 1XGMA 2GG8A 2GG3A 1N51A 2GTXA 2GU4A 4EGEA 5JFRA 4B28A 4U6EA 2ZSGA 2BH3A 1CHMA 2NQ7A 4S2RP 2GG2A 5CLSA 1WLRA 2BHBA 4ZWPA 3BIQA 1W7VA 4A6WA 3L7GA 2GU7A 2NQ6A 1PV9A 1R5HA 3IU9A 2Q8KA 3RVAA 3S6BA 4KM3A 2OKNA 1O0XA 2Q92A 1JAWA 2V3ZA 2MATA 4S00A 1KQ9A 1KP0A 2GA2A 2BWWA 4IKTA 3BITA 4IKUA 4U75A 4ZWOA 1Y1NA 3CTZA 2GG5A 1XNZA 1YW7A 1WL6A 2V6CA 1WL9A 4ZWUA 2BWYA 4JUQA 1C24A 1A16A 4U69A 4U70A 5CNXA 3PKEA 3CB6A 2DFIA 1QZYA 4FLIA 3PKCA 4FLKA 2B3HA 4U6ZA 5D6EA 4QR8A 4FLJA 5CDLA 4RGZ1 1XGSA 2EA2A 1KQ0A 2HOWA 3MR1A 2B3LA 4FO8A 1B6AA 2GU6A 2BWUA 3PKAA 5FCHA 4R60A 3L24A 3Q6DA 4U73A 4OOKA 1BOAA 1C21A 3MATA 4PV4A 3FMQA 4FUKA
chains in the Genus database with same CATH superfamily
1YW8A 2OAZA 1C23A 2ADUA 4IPAA 4MATA 2EVOA 1WKMA 4HXXA 2BHDA 1BN5A 3FM3A 5CDVA 2GU5A 2P9AA 2G6PA 2BHCA 4U76A 4ZNGA 5JHUA 2B3KA 1XGNA 4IF7A 3PKDA 4PNCA 4IKRA 1R58A 1QXZA 2BHAA 1QXYA 2BN7A 2P98A 2GGBA 3PKBA 4RZZA 3D27A 3TAVA 5JI6A 3MX6A 1YJ3A 4U6CA 1R5GA 1C27A 1C22A 3BIPA 3TB5A 2EA4A 1WBQA 4Z7MA 1YVMA 4FO7A 3IG4A 1M35A 4IKSA 5CE6A 2BB7A 2Q96A 2Q93A 4U6WA 2BWXA 3RORA 5E5BA 2GZ5A 1YW9A 5CIKA 4IECA 2Q95A 4IDYA 2GG0A 2Q94A 2EVMA 2BWTA 3CB5A 1WN1A 2EVCA 2IW2A 2BWSA 3IU8A 4U1BA 4S01A 4A6VA 2GGCA 2GG7A 1B59A 1QXWA 1WY2A 3IU7A 5D6FA 4FLLA 1W2MA 2BWVA 2P99A 4FKCA 4U6JA 5FCFA 2V3XA 3FMRA 4RZYA 1MATA 4IU6A 1XGOA 5CDEA 2V3YA 2GG9A 4S2TP 4U71A 1XGMA 2GG8A 2GG3A 1N51A 2GTXA 2GU4A 4EGEA 5JFRA 4B28A 4U6EA 2ZSGA 2BH3A 1CHMA 2NQ7A 4S2RP 2GG2A 5CLSA 1WLRA 2BHBA 4ZWPA 3BIQA 1W7VA 4A6WA 3L7GA 2GU7A 2NQ6A 1PV9A 1R5HA 3IU9A 2Q8KA 3RVAA 3S6BA 4KM3A 2OKNA 1O0XA 2Q92A 1JAWA 2V3ZA 2MATA 4S00A 1KQ9A 1KP0A 2GA2A 2BWWA 4IKTA 3BITA 4IKUA 4U75A 4ZWOA 1Y1NA 3CTZA 2GG5A 1XNZA 1YW7A 1WL6A 2V6CA 1WL9A 4ZWUA 2BWYA 4JUQA 1C24A 1A16A 4U69A 4U70A 5CNXA 3PKEA 3CB6A 2DFIA 1QZYA 4FLIA 3PKCA 4FLKA 2B3HA 4U6ZA 5D6EA 4QR8A 4FLJA 5CDLA 4RGZ1 1XGSA 2EA2A 1KQ0A 2HOWA 3MR1A 2B3LA 4FO8A 1B6AA 2GU6A 2BWUA 3PKAA 5FCHA 4R60A 3L24A 3Q6DA 4U73A 4OOKA 1BOAA 1C21A 3MATA 4PV4A 3FMQA 4FUKA
chains in the Genus database with same CATH topology
1YW8A 2OAZA 1C23A 2ADUA 4IPAA 4MATA 2EVOA 1WKMA 4HXXA 2BHDA 1BN5A 3FM3A 5CDVA 2GU5A 2P9AA 2G6PA 2BHCA 4U76A 4ZNGA 5JHUA 2B3KA 1XGNA 4IF7A 3PKDA 4PNCA 4IKRA 1R58A 1QXZA 2BHAA 1QXYA 2BN7A 2P98A 2GGBA 3PKBA 4RZZA 3D27A 3TAVA 5JI6A 3MX6A 1YJ3A 4U6CA 1R5GA 1C27A 1C22A 3BIPA 3TB5A 2EA4A 1WBQA 4Z7MA 1YVMA 4FO7A 3IG4A 1M35A 4IKSA 5CE6A 2BB7A 2Q96A 2Q93A 4U6WA 2BWXA 3RORA 5E5BA 2GZ5A 1YW9A 5CIKA 4IECA 2Q95A 4IDYA 2GG0A 2Q94A 2EVMA 2BWTA 3CB5A 1WN1A 2EVCA 2IW2A 2BWSA 3IU8A 4U1BA 4S01A 4A6VA 2GGCA 2GG7A 1B59A 1QXWA 1WY2A 3IU7A 5D6FA 4FLLA 1W2MA 2BWVA 2P99A 4FKCA 4U6JA 5FCFA 2V3XA 3FMRA 4RZYA 1MATA 4IU6A 1XGOA 5CDEA 2V3YA 2GG9A 4S2TP 4U71A 1XGMA 2GG8A 2GG3A 1N51A 2GTXA 2GU4A 4EGEA 5JFRA 4B28A 4U6EA 2ZSGA 2BH3A 1CHMA 2NQ7A 4S2RP 2GG2A 5CLSA 1WLRA 2BHBA 4ZWPA 3BIQA 1W7VA 4A6WA 3L7GA 2GU7A 2NQ6A 1PV9A 1R5HA 3IU9A 2Q8KA 3RVAA 3S6BA 4KM3A 2OKNA 1O0XA 2Q92A 1JAWA 2V3ZA 2MATA 4S00A 1KQ9A 1KP0A 2GA2A 2BWWA 4IKTA 3BITA 4IKUA 4U75A 4ZWOA 1Y1NA 3CTZA 2GG5A 1XNZA 1YW7A 1WL6A 2V6CA 1WL9A 4ZWUA 2BWYA 4JUQA 1C24A 1A16A 4U69A 4U70A 5CNXA 3PKEA 3CB6A 2DFIA 1QZYA 4FLIA 3PKCA 4FLKA 2B3HA 4U6ZA 5D6EA 4QR8A 4FLJA 5CDLA 4RGZ1 1XGSA 2EA2A 1KQ0A 2HOWA 3MR1A 2B3LA 4FO8A 1B6AA 2GU6A 2BWUA 3PKAA 5FCHA 4R60A 3L24A 3Q6DA 4U73A 4OOKA 1BOAA 1C21A 3MATA 4PV4A 3FMQA 4FUKA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1YW8 A;  2OAZ A;  1C23 A;  2ADU A;  4IPA A;  4MAT A;  2EVO A;  1WKM A;  4HXX A;  2BHD A;  1BN5 A;  3FM3 A;  5CDV A;  2GU5 A;  2P9A A;  2G6P A;  2BHC A;  4U76 A;  4ZNG A;  5JHU A;  2B3K A;  1XGN A;  4IF7 A;  3PKD A;  4PNC A;  4IKR A;  1R58 A;  1QXZ A;  2BHA A;  1QXY A;  2BN7 A;  2P98 A;  2GGB A;  3PKB A;  4RZZ A;  3D27 A;  3TAV A;  5JI6 A;  3MX6 A;  1YJ3 A;  4U6C A;  1R5G A;  1C27 A;  1C22 A;  3BIP A;  3TB5 A;  2EA4 A;  1WBQ A;  4Z7M A;  1YVM A;  4FO7 A;  3IG4 A;  1M35 A;  4IKS A;  5CE6 A;  2BB7 A;  2Q96 A;  2Q93 A;  4U6W A;  2BWX A;  3ROR A;  5E5B A;  2GZ5 A;  1YW9 A;  5CIK A;  4IEC A;  2Q95 A;  4IDY A;  2GG0 A;  2Q94 A;  2EVM A;  2BWT A;  3CB5 A;  1WN1 A;  2EVC A;  2IW2 A;  2BWS A;  3IU8 A;  4U1B A;  4S01 A;  4A6V A;  2GGC A;  2GG7 A;  1B59 A;  1QXW A;  1WY2 A;  3IU7 A;  5D6F A;  4FLL A;  1W2M A;  2BWV A;  2P99 A;  4FKC A;  4U6J A;  5FCF A;  2V3X A;  3FMR A;  4RZY A;  1MAT A;  4IU6 A;  1XGO A;  5CDE A;  2V3Y A;  2GG9 A;  4S2T P;  4U71 A;  1XGM A;  2GG8 A;  2GG3 A;  1N51 A;  2GTX A;  2GU4 A;  4EGE A;  5JFR A;  4B28 A;  4U6E A;  2ZSG A;  2BH3 A;  1CHM A;  2NQ7 A;  4S2R P;  2GG2 A;  5CLS A;  1WLR A;  2BHB A;  4ZWP A;  3BIQ A;  1W7V A;  4A6W A;  3L7G A;  2GU7 A;  2NQ6 A;  1PV9 A;  1R5H A;  3IU9 A;  2Q8K A;  3RVA A;  3S6B A;  4KM3 A;  2OKN A;  1O0X A;  2Q92 A;  1JAW A;  2V3Z A;  2MAT A;  4S00 A;  1KQ9 A;  1KP0 A;  2GA2 A;  2BWW A;  4IKT A;  3BIT A;  4IKU A;  4U75 A;  4ZWO A;  1Y1N A;  3CTZ A;  2GG5 A;  1XNZ A;  1YW7 A;  1WL6 A;  2V6C A;  1WL9 A;  4ZWU A;  2BWY A;  4JUQ A;  1C24 A;  1A16 A;  4U69 A;  4U70 A;  5CNX A;  3PKE A;  3CB6 A;  2DFI A;  1QZY A;  4FLI A;  3PKC A;  4FLK A;  2B3H A;  4U6Z A;  5D6E A;  4QR8 A;  4FLJ A;  5CDL A;  4RGZ 1;  1XGS A;  2EA2 A;  1KQ0 A;  2HOW A;  3MR1 A;  2B3L A;  4FO8 A;  1B6A A;  2GU6 A;  2BWU A;  3PKA A;  5FCH A;  4R60 A;  3L24 A;  3Q6D A;  4U73 A;  4OOK A;  1BOA A;  1C21 A;  3MAT A;  4PV4 A;  3FMQ A;  4FUK A; 
#chains in the Genus database with same CATH topology
 1YW8 A;  2OAZ A;  1C23 A;  2ADU A;  4IPA A;  4MAT A;  2EVO A;  1WKM A;  4HXX A;  2BHD A;  1BN5 A;  3FM3 A;  5CDV A;  2GU5 A;  2P9A A;  2G6P A;  2BHC A;  4U76 A;  4ZNG A;  5JHU A;  2B3K A;  1XGN A;  4IF7 A;  3PKD A;  4PNC A;  4IKR A;  1R58 A;  1QXZ A;  2BHA A;  1QXY A;  2BN7 A;  2P98 A;  2GGB A;  3PKB A;  4RZZ A;  3D27 A;  3TAV A;  5JI6 A;  3MX6 A;  1YJ3 A;  4U6C A;  1R5G A;  1C27 A;  1C22 A;  3BIP A;  3TB5 A;  2EA4 A;  1WBQ A;  4Z7M A;  1YVM A;  4FO7 A;  3IG4 A;  1M35 A;  4IKS A;  5CE6 A;  2BB7 A;  2Q96 A;  2Q93 A;  4U6W A;  2BWX A;  3ROR A;  5E5B A;  2GZ5 A;  1YW9 A;  5CIK A;  4IEC A;  2Q95 A;  4IDY A;  2GG0 A;  2Q94 A;  2EVM A;  2BWT A;  3CB5 A;  1WN1 A;  2EVC A;  2IW2 A;  2BWS A;  3IU8 A;  4U1B A;  4S01 A;  4A6V A;  2GGC A;  2GG7 A;  1B59 A;  1QXW A;  1WY2 A;  3IU7 A;  5D6F A;  4FLL A;  1W2M A;  2BWV A;  2P99 A;  4FKC A;  4U6J A;  5FCF A;  2V3X A;  3FMR A;  4RZY A;  1MAT A;  4IU6 A;  1XGO A;  5CDE A;  2V3Y A;  2GG9 A;  4S2T P;  4U71 A;  1XGM A;  2GG8 A;  2GG3 A;  1N51 A;  2GTX A;  2GU4 A;  4EGE A;  5JFR A;  4B28 A;  4U6E A;  2ZSG A;  2BH3 A;  1CHM A;  2NQ7 A;  4S2R P;  2GG2 A;  5CLS A;  1WLR A;  2BHB A;  4ZWP A;  3BIQ A;  1W7V A;  4A6W A;  3L7G A;  2GU7 A;  2NQ6 A;  1PV9 A;  1R5H A;  3IU9 A;  2Q8K A;  3RVA A;  3S6B A;  4KM3 A;  2OKN A;  1O0X A;  2Q92 A;  1JAW A;  2V3Z A;  2MAT A;  4S00 A;  1KQ9 A;  1KP0 A;  2GA2 A;  2BWW A;  4IKT A;  3BIT A;  4IKU A;  4U75 A;  4ZWO A;  1Y1N A;  3CTZ A;  2GG5 A;  1XNZ A;  1YW7 A;  1WL6 A;  2V6C A;  1WL9 A;  4ZWU A;  2BWY A;  4JUQ A;  1C24 A;  1A16 A;  4U69 A;  4U70 A;  5CNX A;  3PKE A;  3CB6 A;  2DFI A;  1QZY A;  4FLI A;  3PKC A;  4FLK A;  2B3H A;  4U6Z A;  5D6E A;  4QR8 A;  4FLJ A;  5CDL A;  4RGZ 1;  1XGS A;  2EA2 A;  1KQ0 A;  2HOW A;  3MR1 A;  2B3L A;  4FO8 A;  1B6A A;  2GU6 A;  2BWU A;  3PKA A;  5FCH A;  4R60 A;  3L24 A;  3Q6D A;  4U73 A;  4OOK A;  1BOA A;  1C21 A;  3MAT A;  4PV4 A;  3FMQ A;  4FUK A; 
#chains in the Genus database with same CATH homology
 1YW8 A;  2OAZ A;  1C23 A;  2ADU A;  4IPA A;  4MAT A;  2EVO A;  1WKM A;  4HXX A;  2BHD A;  1BN5 A;  3FM3 A;  5CDV A;  2GU5 A;  2P9A A;  2G6P A;  2BHC A;  4U76 A;  4ZNG A;  5JHU A;  2B3K A;  1XGN A;  4IF7 A;  3PKD A;  4PNC A;  4IKR A;  1R58 A;  1QXZ A;  2BHA A;  1QXY A;  2BN7 A;  2P98 A;  2GGB A;  3PKB A;  4RZZ A;  3D27 A;  3TAV A;  5JI6 A;  3MX6 A;  1YJ3 A;  4U6C A;  1R5G A;  1C27 A;  1C22 A;  3BIP A;  3TB5 A;  2EA4 A;  1WBQ A;  4Z7M A;  1YVM A;  4FO7 A;  3IG4 A;  1M35 A;  4IKS A;  5CE6 A;  2BB7 A;  2Q96 A;  2Q93 A;  4U6W A;  2BWX A;  3ROR A;  5E5B A;  2GZ5 A;  1YW9 A;  5CIK A;  4IEC A;  2Q95 A;  4IDY A;  2GG0 A;  2Q94 A;  2EVM A;  2BWT A;  3CB5 A;  1WN1 A;  2EVC A;  2IW2 A;  2BWS A;  3IU8 A;  4U1B A;  4S01 A;  4A6V A;  2GGC A;  2GG7 A;  1B59 A;  1QXW A;  1WY2 A;  3IU7 A;  5D6F A;  4FLL A;  1W2M A;  2BWV A;  2P99 A;  4FKC A;  4U6J A;  5FCF A;  2V3X A;  3FMR A;  4RZY A;  1MAT A;  4IU6 A;  1XGO A;  5CDE A;  2V3Y A;  2GG9 A;  4S2T P;  4U71 A;  1XGM A;  2GG8 A;  2GG3 A;  1N51 A;  2GTX A;  2GU4 A;  4EGE A;  5JFR A;  4B28 A;  4U6E A;  2ZSG A;  2BH3 A;  1CHM A;  2NQ7 A;  4S2R P;  2GG2 A;  5CLS A;  1WLR A;  2BHB A;  4ZWP A;  3BIQ A;  1W7V A;  4A6W A;  3L7G A;  2GU7 A;  2NQ6 A;  1PV9 A;  1R5H A;  3IU9 A;  2Q8K A;  3RVA A;  3S6B A;  4KM3 A;  2OKN A;  1O0X A;  2Q92 A;  1JAW A;  2V3Z A;  2MAT A;  4S00 A;  1KQ9 A;  1KP0 A;  2GA2 A;  2BWW A;  4IKT A;  3BIT A;  4IKU A;  4U75 A;  4ZWO A;  1Y1N A;  3CTZ A;  2GG5 A;  1XNZ A;  1YW7 A;  1WL6 A;  2V6C A;  1WL9 A;  4ZWU A;  2BWY A;  4JUQ A;  1C24 A;  1A16 A;  4U69 A;  4U70 A;  5CNX A;  3PKE A;  3CB6 A;  2DFI A;  1QZY A;  4FLI A;  3PKC A;  4FLK A;  2B3H A;  4U6Z A;  5D6E A;  4QR8 A;  4FLJ A;  5CDL A;  4RGZ 1;  1XGS A;  2EA2 A;  1KQ0 A;  2HOW A;  3MR1 A;  2B3L A;  4FO8 A;  1B6A A;  2GU6 A;  2BWU A;  3PKA A;  5FCH A;  4R60 A;  3L24 A;  3Q6D A;  4U73 A;  4OOK A;  1BOA A;  1C21 A;  3MAT A;  4PV4 A;  3FMQ A;  4FUK A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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