4FO7A

Pseudomonas aeruginosa metap, in mn form
Total Genus 74
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
74
sequence length
258
structure length
258
Chain Sequence
TVTIKTPDDIEKMRIAGRLAAEVLEMIGEHIKPGVTTEELDRICHDYIVNEQKAIPAPLNYKGFPKSICTSINHVVCHGIPNEKPLKEGDILNVDITVIKDGYHGDTSKMFLVGKTPEWADRLCQITQECMYKGISVVRPGAHLGDIGEIIQKHAEKNGFSVVREYCGHGIGKVFHEEPQVLHYGRAGTGIELKEGMIFTIEPMINQGRPETRLLGDGWTAITKDRKLSAQWEHTVLVTADGYEILTLRNDETFPRTS
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
publication title Methionine excision captured by the structures of a methionine aminopeptidase
rcsb
molecule tags Hydrolase
source organism Pseudomonas aeruginosa
molecule keywords Methionine aminopeptidase
total genus 74
structure length 258
sequence length 258
chains with identical sequence B, C, D
ec nomenclature ec 3.4.11.18: Methionyl aminopeptidase.
pdb deposition date 2012-06-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00557 Peptidase_M24 Metallopeptidase family M24
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.230.10 Alpha Beta Alpha-Beta Complex Creatine Amidinohydrolase Creatinase/methionine aminopeptidase superfamily 4fo7A00
3BIPA 3CB6A 1XGOA 3FM3A 3MATA 4A6VA 1R5HA 5E5BA 5CDLA 1BOAA 1KQ9A 2BB7A 1CHMA 5FCFA 2BN7A 1C27A 2EA4A 2GGBA 2GU4A 2Q95A 4R60A 4S2RP 4PNCA 4IKSA 3PKEA 4U69A 5CIKA 2BWTA 3TB5A 5CDVA 5CDEA 2GG0A 4B28A 3PKBA 2BWYA 3S6BA 1C21A 2P99A 4IDYA 1N51A 4MATA 2BWXA 2B3KA 3RVAA 4ZWUA 3RORA 4IECA 2BHCA 2EVOA 5D6FA 3IG4A 2GG3A 5CE6A 2GTXA 4HXXA 2BHBA 2BH3A 2P9AA 4Z7MA 3PKDA 2EVMA 4S01A 2IW2A 2V3XA 1WL9A 4EGEA 1YVMA 4PV4A 3IU8A 1B6AA 3BIQA 4U6EA 4IU6A 2GG8A 3MR1A 1KQ0A 4U6ZA 4JUQA 1MATA 1WKMA 5JI6A 4IF7A 2GZ5A 1BN5A 3PKAA 4S00A 1YJ3A 4RZZA 3CB5A 3L7GA 5JFRA 2GU7A 4FLIA 2GG7A 1C23A 2BWVA 4FLLA 4KM3A 2GU6A 1WL6A 4ZWOA 4U70A 2BWUA 2EA2A 4FO7A 2NQ6A 3PKCA 5JHUA 1PV9A 4OOKA 2P98A 2BWWA 4IKTA 5D6EA 1YW8A 4ZNGA 1JAWA 2NQ7A 2Q96A 1WN1A 2EVCA 3L24A 1Y1NA 2ADUA 1XNZA 1KP0A 1XGSA 3MX6A 4U76A 3D27A 3IU9A 4IPAA 1B59A 2BHDA 2BWSA 3Q6DA 1WBQA 2GG5A 4S2TP 1YW9A 2G6PA 4RGZ1 4U1BA 5CLSA 2OKNA 2B3HA 4FKCA 4FO8A 1QXZA 2HOWA 1QXWA 2B3LA 2GU5A 4U6WA 4ZWPA 4U71A 1XGMA 2GGCA 1R5GA 5FCHA 4U6JA 1W7VA 4U73A 1O0XA 3IU7A 2BHAA 2GA2A 2Q92A 2OAZA 2V6CA 2DFIA 3FMQA 2GG2A 1M35A 4U75A 2MATA 4A6WA 2V3ZA 1R58A 2Q8KA 1WLRA 4FLKA 1A16A 4IKRA 4QR8A 3FMRA 3CTZA 2V3YA 1YW7A 4FLJA 1C24A 1C22A 2ZSGA 4RZYA 4IKUA 1QZYA 1XGNA 2Q94A 4U6CA 2GG9A 4FUKA 5CNXA 3TAVA 2Q93A 1WY2A 1QXYA 3BITA 1W2MA
chains in the Genus database with same CATH superfamily
3BIPA 3CB6A 1XGOA 3FM3A 3MATA 4A6VA 1R5HA 5E5BA 5CDLA 1BOAA 1KQ9A 2BB7A 1CHMA 5FCFA 2BN7A 1C27A 2EA4A 2GGBA 2GU4A 2Q95A 4R60A 4S2RP 4PNCA 4IKSA 3PKEA 4U69A 5CIKA 2BWTA 3TB5A 5CDVA 5CDEA 2GG0A 4B28A 3PKBA 2BWYA 3S6BA 1C21A 2P99A 4IDYA 1N51A 4MATA 2BWXA 2B3KA 3RVAA 4ZWUA 3RORA 4IECA 2BHCA 2EVOA 5D6FA 3IG4A 2GG3A 5CE6A 2GTXA 4HXXA 2BHBA 2BH3A 2P9AA 4Z7MA 3PKDA 2EVMA 4S01A 2IW2A 2V3XA 1WL9A 4EGEA 1YVMA 4PV4A 3IU8A 1B6AA 3BIQA 4U6EA 4IU6A 2GG8A 3MR1A 1KQ0A 4U6ZA 4JUQA 1MATA 1WKMA 5JI6A 4IF7A 2GZ5A 1BN5A 3PKAA 4S00A 1YJ3A 4RZZA 3CB5A 3L7GA 5JFRA 2GU7A 4FLIA 2GG7A 1C23A 2BWVA 4FLLA 4KM3A 2GU6A 1WL6A 4ZWOA 4U70A 2BWUA 2EA2A 4FO7A 2NQ6A 3PKCA 5JHUA 1PV9A 4OOKA 2P98A 2BWWA 4IKTA 5D6EA 1YW8A 4ZNGA 1JAWA 2NQ7A 2Q96A 1WN1A 2EVCA 3L24A 1Y1NA 2ADUA 1XNZA 1KP0A 1XGSA 3MX6A 4U76A 3D27A 3IU9A 4IPAA 1B59A 2BHDA 2BWSA 3Q6DA 1WBQA 2GG5A 4S2TP 1YW9A 2G6PA 4RGZ1 4U1BA 5CLSA 2OKNA 2B3HA 4FKCA 4FO8A 1QXZA 2HOWA 1QXWA 2B3LA 2GU5A 4U6WA 4ZWPA 4U71A 1XGMA 2GGCA 1R5GA 5FCHA 4U6JA 1W7VA 4U73A 1O0XA 3IU7A 2BHAA 2GA2A 2Q92A 2OAZA 2V6CA 2DFIA 3FMQA 2GG2A 1M35A 4U75A 2MATA 4A6WA 2V3ZA 1R58A 2Q8KA 1WLRA 4FLKA 1A16A 4IKRA 4QR8A 3FMRA 3CTZA 2V3YA 1YW7A 4FLJA 1C24A 1C22A 2ZSGA 4RZYA 4IKUA 1QZYA 1XGNA 2Q94A 4U6CA 2GG9A 4FUKA 5CNXA 3TAVA 2Q93A 1WY2A 1QXYA 3BITA 1W2MA
chains in the Genus database with same CATH topology
3BIPA 3CB6A 1XGOA 3FM3A 3MATA 4A6VA 1R5HA 5E5BA 5CDLA 1BOAA 1KQ9A 2BB7A 1CHMA 5FCFA 2BN7A 1C27A 2EA4A 2GGBA 2GU4A 2Q95A 4R60A 4S2RP 4PNCA 4IKSA 3PKEA 4U69A 5CIKA 2BWTA 3TB5A 5CDVA 5CDEA 2GG0A 4B28A 3PKBA 2BWYA 3S6BA 1C21A 2P99A 4IDYA 1N51A 4MATA 2BWXA 2B3KA 3RVAA 4ZWUA 3RORA 4IECA 2BHCA 2EVOA 5D6FA 3IG4A 2GG3A 5CE6A 2GTXA 4HXXA 2BHBA 2BH3A 2P9AA 4Z7MA 3PKDA 2EVMA 4S01A 2IW2A 2V3XA 1WL9A 4EGEA 1YVMA 4PV4A 3IU8A 1B6AA 3BIQA 4U6EA 4IU6A 2GG8A 3MR1A 1KQ0A 4U6ZA 4JUQA 1MATA 1WKMA 5JI6A 4IF7A 2GZ5A 1BN5A 3PKAA 4S00A 1YJ3A 4RZZA 3CB5A 3L7GA 5JFRA 2GU7A 4FLIA 2GG7A 1C23A 2BWVA 4FLLA 4KM3A 2GU6A 1WL6A 4ZWOA 4U70A 2BWUA 2EA2A 4FO7A 2NQ6A 3PKCA 5JHUA 1PV9A 4OOKA 2P98A 2BWWA 4IKTA 5D6EA 1YW8A 4ZNGA 1JAWA 2NQ7A 2Q96A 1WN1A 2EVCA 3L24A 1Y1NA 2ADUA 1XNZA 1KP0A 1XGSA 3MX6A 4U76A 3D27A 3IU9A 4IPAA 1B59A 2BHDA 2BWSA 3Q6DA 1WBQA 2GG5A 4S2TP 1YW9A 2G6PA 4RGZ1 4U1BA 5CLSA 2OKNA 2B3HA 4FKCA 4FO8A 1QXZA 2HOWA 1QXWA 2B3LA 2GU5A 4U6WA 4ZWPA 4U71A 1XGMA 2GGCA 1R5GA 5FCHA 4U6JA 1W7VA 4U73A 1O0XA 3IU7A 2BHAA 2GA2A 2Q92A 2OAZA 2V6CA 2DFIA 3FMQA 2GG2A 1M35A 4U75A 2MATA 4A6WA 2V3ZA 1R58A 2Q8KA 1WLRA 4FLKA 1A16A 4IKRA 4QR8A 3FMRA 3CTZA 2V3YA 1YW7A 4FLJA 1C24A 1C22A 2ZSGA 4RZYA 4IKUA 1QZYA 1XGNA 2Q94A 4U6CA 2GG9A 4FUKA 5CNXA 3TAVA 2Q93A 1WY2A 1QXYA 3BITA 1W2MA
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 3BIP A;  3CB6 A;  1XGO A;  3FM3 A;  3MAT A;  4A6V A;  1R5H A;  5E5B A;  5CDL A;  1BOA A;  1KQ9 A;  2BB7 A;  1CHM A;  5FCF A;  2BN7 A;  1C27 A;  2EA4 A;  2GGB A;  2GU4 A;  2Q95 A;  4R60 A;  4S2R P;  4PNC A;  4IKS A;  3PKE A;  4U69 A;  5CIK A;  2BWT A;  3TB5 A;  5CDV A;  5CDE A;  2GG0 A;  4B28 A;  3PKB A;  2BWY A;  3S6B A;  1C21 A;  2P99 A;  4IDY A;  1N51 A;  4MAT A;  2BWX A;  2B3K A;  3RVA A;  4ZWU A;  3ROR A;  4IEC A;  2BHC A;  2EVO A;  5D6F A;  3IG4 A;  2GG3 A;  5CE6 A;  2GTX A;  4HXX A;  2BHB A;  2BH3 A;  2P9A A;  4Z7M A;  3PKD A;  2EVM A;  4S01 A;  2IW2 A;  2V3X A;  1WL9 A;  4EGE A;  1YVM A;  4PV4 A;  3IU8 A;  1B6A A;  3BIQ A;  4U6E A;  4IU6 A;  2GG8 A;  3MR1 A;  1KQ0 A;  4U6Z A;  4JUQ A;  1MAT A;  1WKM A;  5JI6 A;  4IF7 A;  2GZ5 A;  1BN5 A;  3PKA A;  4S00 A;  1YJ3 A;  4RZZ A;  3CB5 A;  3L7G A;  5JFR A;  2GU7 A;  4FLI A;  2GG7 A;  1C23 A;  2BWV A;  4FLL A;  4KM3 A;  2GU6 A;  1WL6 A;  4ZWO A;  4U70 A;  2BWU A;  2EA2 A;  4FO7 A;  2NQ6 A;  3PKC A;  5JHU A;  1PV9 A;  4OOK A;  2P98 A;  2BWW A;  4IKT A;  5D6E A;  1YW8 A;  4ZNG A;  1JAW A;  2NQ7 A;  2Q96 A;  1WN1 A;  2EVC A;  3L24 A;  1Y1N A;  2ADU A;  1XNZ A;  1KP0 A;  1XGS A;  3MX6 A;  4U76 A;  3D27 A;  3IU9 A;  4IPA A;  1B59 A;  2BHD A;  2BWS A;  3Q6D A;  1WBQ A;  2GG5 A;  4S2T P;  1YW9 A;  2G6P A;  4RGZ 1;  4U1B A;  5CLS A;  2OKN A;  2B3H A;  4FKC A;  4FO8 A;  1QXZ A;  2HOW A;  1QXW A;  2B3L A;  2GU5 A;  4U6W A;  4ZWP A;  4U71 A;  1XGM A;  2GGC A;  1R5G A;  5FCH A;  4U6J A;  1W7V A;  4U73 A;  1O0X A;  3IU7 A;  2BHA A;  2GA2 A;  2Q92 A;  2OAZ A;  2V6C A;  2DFI A;  3FMQ A;  2GG2 A;  1M35 A;  4U75 A;  2MAT A;  4A6W A;  2V3Z A;  1R58 A;  2Q8K A;  1WLR A;  4FLK A;  1A16 A;  4IKR A;  4QR8 A;  3FMR A;  3CTZ A;  2V3Y A;  1YW7 A;  4FLJ A;  1C24 A;  1C22 A;  2ZSG A;  4RZY A;  4IKU A;  1QZY A;  1XGN A;  2Q94 A;  4U6C A;  2GG9 A;  4FUK A;  5CNX A;  3TAV A;  2Q93 A;  1WY2 A;  1QXY A;  3BIT A;  1W2M A; 
#chains in the Genus database with same CATH topology
 3BIP A;  3CB6 A;  1XGO A;  3FM3 A;  3MAT A;  4A6V A;  1R5H A;  5E5B A;  5CDL A;  1BOA A;  1KQ9 A;  2BB7 A;  1CHM A;  5FCF A;  2BN7 A;  1C27 A;  2EA4 A;  2GGB A;  2GU4 A;  2Q95 A;  4R60 A;  4S2R P;  4PNC A;  4IKS A;  3PKE A;  4U69 A;  5CIK A;  2BWT A;  3TB5 A;  5CDV A;  5CDE A;  2GG0 A;  4B28 A;  3PKB A;  2BWY A;  3S6B A;  1C21 A;  2P99 A;  4IDY A;  1N51 A;  4MAT A;  2BWX A;  2B3K A;  3RVA A;  4ZWU A;  3ROR A;  4IEC A;  2BHC A;  2EVO A;  5D6F A;  3IG4 A;  2GG3 A;  5CE6 A;  2GTX A;  4HXX A;  2BHB A;  2BH3 A;  2P9A A;  4Z7M A;  3PKD A;  2EVM A;  4S01 A;  2IW2 A;  2V3X A;  1WL9 A;  4EGE A;  1YVM A;  4PV4 A;  3IU8 A;  1B6A A;  3BIQ A;  4U6E A;  4IU6 A;  2GG8 A;  3MR1 A;  1KQ0 A;  4U6Z A;  4JUQ A;  1MAT A;  1WKM A;  5JI6 A;  4IF7 A;  2GZ5 A;  1BN5 A;  3PKA A;  4S00 A;  1YJ3 A;  4RZZ A;  3CB5 A;  3L7G A;  5JFR A;  2GU7 A;  4FLI A;  2GG7 A;  1C23 A;  2BWV A;  4FLL A;  4KM3 A;  2GU6 A;  1WL6 A;  4ZWO A;  4U70 A;  2BWU A;  2EA2 A;  4FO7 A;  2NQ6 A;  3PKC A;  5JHU A;  1PV9 A;  4OOK A;  2P98 A;  2BWW A;  4IKT A;  5D6E A;  1YW8 A;  4ZNG A;  1JAW A;  2NQ7 A;  2Q96 A;  1WN1 A;  2EVC A;  3L24 A;  1Y1N A;  2ADU A;  1XNZ A;  1KP0 A;  1XGS A;  3MX6 A;  4U76 A;  3D27 A;  3IU9 A;  4IPA A;  1B59 A;  2BHD A;  2BWS A;  3Q6D A;  1WBQ A;  2GG5 A;  4S2T P;  1YW9 A;  2G6P A;  4RGZ 1;  4U1B A;  5CLS A;  2OKN A;  2B3H A;  4FKC A;  4FO8 A;  1QXZ A;  2HOW A;  1QXW A;  2B3L A;  2GU5 A;  4U6W A;  4ZWP A;  4U71 A;  1XGM A;  2GGC A;  1R5G A;  5FCH A;  4U6J A;  1W7V A;  4U73 A;  1O0X A;  3IU7 A;  2BHA A;  2GA2 A;  2Q92 A;  2OAZ A;  2V6C A;  2DFI A;  3FMQ A;  2GG2 A;  1M35 A;  4U75 A;  2MAT A;  4A6W A;  2V3Z A;  1R58 A;  2Q8K A;  1WLR A;  4FLK A;  1A16 A;  4IKR A;  4QR8 A;  3FMR A;  3CTZ A;  2V3Y A;  1YW7 A;  4FLJ A;  1C24 A;  1C22 A;  2ZSG A;  4RZY A;  4IKU A;  1QZY A;  1XGN A;  2Q94 A;  4U6C A;  2GG9 A;  4FUK A;  5CNX A;  3TAV A;  2Q93 A;  1WY2 A;  1QXY A;  3BIT A;  1W2M A; 
#chains in the Genus database with same CATH homology
 3BIP A;  3CB6 A;  1XGO A;  3FM3 A;  3MAT A;  4A6V A;  1R5H A;  5E5B A;  5CDL A;  1BOA A;  1KQ9 A;  2BB7 A;  1CHM A;  5FCF A;  2BN7 A;  1C27 A;  2EA4 A;  2GGB A;  2GU4 A;  2Q95 A;  4R60 A;  4S2R P;  4PNC A;  4IKS A;  3PKE A;  4U69 A;  5CIK A;  2BWT A;  3TB5 A;  5CDV A;  5CDE A;  2GG0 A;  4B28 A;  3PKB A;  2BWY A;  3S6B A;  1C21 A;  2P99 A;  4IDY A;  1N51 A;  4MAT A;  2BWX A;  2B3K A;  3RVA A;  4ZWU A;  3ROR A;  4IEC A;  2BHC A;  2EVO A;  5D6F A;  3IG4 A;  2GG3 A;  5CE6 A;  2GTX A;  4HXX A;  2BHB A;  2BH3 A;  2P9A A;  4Z7M A;  3PKD A;  2EVM A;  4S01 A;  2IW2 A;  2V3X A;  1WL9 A;  4EGE A;  1YVM A;  4PV4 A;  3IU8 A;  1B6A A;  3BIQ A;  4U6E A;  4IU6 A;  2GG8 A;  3MR1 A;  1KQ0 A;  4U6Z A;  4JUQ A;  1MAT A;  1WKM A;  5JI6 A;  4IF7 A;  2GZ5 A;  1BN5 A;  3PKA A;  4S00 A;  1YJ3 A;  4RZZ A;  3CB5 A;  3L7G A;  5JFR A;  2GU7 A;  4FLI A;  2GG7 A;  1C23 A;  2BWV A;  4FLL A;  4KM3 A;  2GU6 A;  1WL6 A;  4ZWO A;  4U70 A;  2BWU A;  2EA2 A;  4FO7 A;  2NQ6 A;  3PKC A;  5JHU A;  1PV9 A;  4OOK A;  2P98 A;  2BWW A;  4IKT A;  5D6E A;  1YW8 A;  4ZNG A;  1JAW A;  2NQ7 A;  2Q96 A;  1WN1 A;  2EVC A;  3L24 A;  1Y1N A;  2ADU A;  1XNZ A;  1KP0 A;  1XGS A;  3MX6 A;  4U76 A;  3D27 A;  3IU9 A;  4IPA A;  1B59 A;  2BHD A;  2BWS A;  3Q6D A;  1WBQ A;  2GG5 A;  4S2T P;  1YW9 A;  2G6P A;  4RGZ 1;  4U1B A;  5CLS A;  2OKN A;  2B3H A;  4FKC A;  4FO8 A;  1QXZ A;  2HOW A;  1QXW A;  2B3L A;  2GU5 A;  4U6W A;  4ZWP A;  4U71 A;  1XGM A;  2GGC A;  1R5G A;  5FCH A;  4U6J A;  1W7V A;  4U73 A;  1O0X A;  3IU7 A;  2BHA A;  2GA2 A;  2Q92 A;  2OAZ A;  2V6C A;  2DFI A;  3FMQ A;  2GG2 A;  1M35 A;  4U75 A;  2MAT A;  4A6W A;  2V3Z A;  1R58 A;  2Q8K A;  1WLR A;  4FLK A;  1A16 A;  4IKR A;  4QR8 A;  3FMR A;  3CTZ A;  2V3Y A;  1YW7 A;  4FLJ A;  1C24 A;  1C22 A;  2ZSG A;  4RZY A;  4IKU A;  1QZY A;  1XGN A;  2Q94 A;  4U6C A;  2GG9 A;  4FUK A;  5CNX A;  3TAV A;  2Q93 A;  1WY2 A;  1QXY A;  3BIT A;  1W2M A;
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...
How to cite