4FO7A

Pseudomonas aeruginosa metap, in mn form
Total Genus 74
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
74
sequence length
258
structure length
258
Chain Sequence
TVTIKTPDDIEKMRIAGRLAAEVLEMIGEHIKPGVTTEELDRICHDYIVNEQKAIPAPLNYKGFPKSICTSINHVVCHGIPNEKPLKEGDILNVDITVIKDGYHGDTSKMFLVGKTPEWADRLCQITQECMYKGISVVRPGAHLGDIGEIIQKHAEKNGFSVVREYCGHGIGKVFHEEPQVLHYGRAGTGIELKEGMIFTIEPMINQGRPETRLLGDGWTAITKDRKLSAQWEHTVLVTADGYEILTLRNDETFPRTS
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
Chord Diagram
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publication title Methionine excision captured by the structures of a methionine aminopeptidase
rcsb
molecule keywords Methionine aminopeptidase
molecule tags Hydrolase
source organism Pseudomonas aeruginosa
total genus 74
structure length 258
sequence length 258
chains with identical sequence B, C, D
ec nomenclature ec 3.4.11.18: Methionyl aminopeptidase.
pdb deposition date 2012-06-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00557 Peptidase_M24 Metallopeptidase family M24
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.230.10 Alpha Beta Alpha-Beta Complex Creatine Amidinohydrolase Creatinase/methionine aminopeptidase superfamily 4fo7A00
1KQ0A 3BIPA 3BIQA 3L7GA 3IU7A 2G6PA 2BWUA 4IKSA 2GTXA 2V3ZA 2BWXA 2GG0A 1M35A 3D27A 1QXYA 4MATA 4RZZA 2Q93A 2HOWA 1B6AA 2DFIA 2BHCA 1YW8A 3CB5A 4U71A 2OAZA 4U70A 1WL6A 2EA4A 4IU6A 4FLIA 4S2RP 2GU4A 1R5GA 3S6BA 5D6EA 1Y1NA 4IECA 1WY2A 3TB5A 1QXWA 3MX6A 4A6WA 1A16A 1YVMA 1QXZA 4A6VA 2Q94A 2EA2A 5JFRA 3Q6DA 1C23A 2NQ6A 2OKNA 2BHDA 4IKTA 5CDEA 2GG3A 1W2MA 5FCHA 4FLKA 4IDYA 4QR8A 1XGSA 2BN7A 3BITA 3MR1A 4FLLA 4IPAA 1WN1A 5D6FA 4S01A 1R58A 3CTZA 4IKRA 4U73A 2GG9A 2B3LA 1PV9A 1R5HA 2V3YA 4U76A 4EGEA 2Q92A 5CLSA 2Q95A 4ZWOA 2BHAA 4FO8A 1XGMA 1B59A 4RZYA 4ZWUA 5CDVA 4KM3A 3IU8A 1WLRA 3PKEA 1C24A 3L24A 2GG8A 1KP0A 1C21A 2BWYA 2Q8KA 2BWSA 4OOKA 2GU7A 4S00A 5CIKA 1MATA 2GGCA 4ZWPA 5CDLA 4IKUA 1YW7A 2EVOA 1BN5A 5JI6A 3TAVA 3PKBA 4PNCA 1N51A 4U6ZA 4U1BA 4U6EA 2BHBA 2BH3A 2P9AA 1WL9A 1CHMA 3RORA 2GZ5A 2BB7A 2BWTA 4JUQA 2V3XA 4B28A 4HXXA 3PKCA 2GG5A 2GGBA 3FM3A 1W7VA 1KQ9A 1XNZA 1C22A 2B3KA 2IW2A 4FUKA 5E5BA 2GA2A 3PKAA 4RGZ1 1QZYA 2ADUA 4U6WA 3CB6A 2NQ7A 4U6JA 2GU6A 3IG4A 2B3HA 1C27A 4Z7MA 2P98A 2BWWA 2Q96A 1YW9A 2V6CA 3MATA 1BOAA 1XGOA 1WBQA 2GG2A 4IF7A 1JAWA 2GG7A 4FO7A 4U69A 4U75A 1O0XA 2BWVA 3PKDA 5CNXA 2MATA 4PV4A 4FLJA 5CE6A 1XGNA 2ZSGA 3FMRA 4S2TP 3RVAA 2GU5A 5FCFA 2P99A 2EVMA 1WKMA 3IU9A 3FMQA 4U6CA 4R60A 4ZNGA 5JHUA 1YJ3A 4FKCA 2EVCA
chains in the Genus database with same CATH superfamily
1KQ0A 3BIPA 3BIQA 3L7GA 3IU7A 2G6PA 2BWUA 4IKSA 2GTXA 2V3ZA 2BWXA 2GG0A 1M35A 3D27A 1QXYA 4MATA 4RZZA 2Q93A 2HOWA 1B6AA 2DFIA 2BHCA 1YW8A 3CB5A 4U71A 2OAZA 4U70A 1WL6A 2EA4A 4IU6A 4FLIA 4S2RP 2GU4A 1R5GA 3S6BA 5D6EA 1Y1NA 4IECA 1WY2A 3TB5A 1QXWA 3MX6A 4A6WA 1A16A 1YVMA 1QXZA 4A6VA 2Q94A 2EA2A 5JFRA 3Q6DA 1C23A 2NQ6A 2OKNA 2BHDA 4IKTA 5CDEA 2GG3A 1W2MA 5FCHA 4FLKA 4IDYA 4QR8A 1XGSA 2BN7A 3BITA 3MR1A 4FLLA 4IPAA 1WN1A 5D6FA 4S01A 1R58A 3CTZA 4IKRA 4U73A 2GG9A 2B3LA 1PV9A 1R5HA 2V3YA 4U76A 4EGEA 2Q92A 5CLSA 2Q95A 4ZWOA 2BHAA 4FO8A 1XGMA 1B59A 4RZYA 4ZWUA 5CDVA 4KM3A 3IU8A 1WLRA 3PKEA 1C24A 3L24A 2GG8A 1KP0A 1C21A 2BWYA 2Q8KA 2BWSA 4OOKA 2GU7A 4S00A 5CIKA 1MATA 2GGCA 4ZWPA 5CDLA 4IKUA 1YW7A 2EVOA 1BN5A 5JI6A 3TAVA 3PKBA 4PNCA 1N51A 4U6ZA 4U1BA 4U6EA 2BHBA 2BH3A 2P9AA 1WL9A 1CHMA 3RORA 2GZ5A 2BB7A 2BWTA 4JUQA 2V3XA 4B28A 4HXXA 3PKCA 2GG5A 2GGBA 3FM3A 1W7VA 1KQ9A 1XNZA 1C22A 2B3KA 2IW2A 4FUKA 5E5BA 2GA2A 3PKAA 4RGZ1 1QZYA 2ADUA 4U6WA 3CB6A 2NQ7A 4U6JA 2GU6A 3IG4A 2B3HA 1C27A 4Z7MA 2P98A 2BWWA 2Q96A 1YW9A 2V6CA 3MATA 1BOAA 1XGOA 1WBQA 2GG2A 4IF7A 1JAWA 2GG7A 4FO7A 4U69A 4U75A 1O0XA 2BWVA 3PKDA 5CNXA 2MATA 4PV4A 4FLJA 5CE6A 1XGNA 2ZSGA 3FMRA 4S2TP 3RVAA 2GU5A 5FCFA 2P99A 2EVMA 1WKMA 3IU9A 3FMQA 4U6CA 4R60A 4ZNGA 5JHUA 1YJ3A 4FKCA 2EVCA
chains in the Genus database with same CATH topology
1KQ0A 3BIPA 3BIQA 3L7GA 3IU7A 2G6PA 2BWUA 4IKSA 2GTXA 2V3ZA 2BWXA 2GG0A 1M35A 3D27A 1QXYA 4MATA 4RZZA 2Q93A 2HOWA 1B6AA 2DFIA 2BHCA 1YW8A 3CB5A 4U71A 2OAZA 4U70A 1WL6A 2EA4A 4IU6A 4FLIA 4S2RP 2GU4A 1R5GA 3S6BA 5D6EA 1Y1NA 4IECA 1WY2A 3TB5A 1QXWA 3MX6A 4A6WA 1A16A 1YVMA 1QXZA 4A6VA 2Q94A 2EA2A 5JFRA 3Q6DA 1C23A 2NQ6A 2OKNA 2BHDA 4IKTA 5CDEA 2GG3A 1W2MA 5FCHA 4FLKA 4IDYA 4QR8A 1XGSA 2BN7A 3BITA 3MR1A 4FLLA 4IPAA 1WN1A 5D6FA 4S01A 1R58A 3CTZA 4IKRA 4U73A 2GG9A 2B3LA 1PV9A 1R5HA 2V3YA 4U76A 4EGEA 2Q92A 5CLSA 2Q95A 4ZWOA 2BHAA 4FO8A 1XGMA 1B59A 4RZYA 4ZWUA 5CDVA 4KM3A 3IU8A 1WLRA 3PKEA 1C24A 3L24A 2GG8A 1KP0A 1C21A 2BWYA 2Q8KA 2BWSA 4OOKA 2GU7A 4S00A 5CIKA 1MATA 2GGCA 4ZWPA 5CDLA 4IKUA 1YW7A 2EVOA 1BN5A 5JI6A 3TAVA 3PKBA 4PNCA 1N51A 4U6ZA 4U1BA 4U6EA 2BHBA 2BH3A 2P9AA 1WL9A 1CHMA 3RORA 2GZ5A 2BB7A 2BWTA 4JUQA 2V3XA 4B28A 4HXXA 3PKCA 2GG5A 2GGBA 3FM3A 1W7VA 1KQ9A 1XNZA 1C22A 2B3KA 2IW2A 4FUKA 5E5BA 2GA2A 3PKAA 4RGZ1 1QZYA 2ADUA 4U6WA 3CB6A 2NQ7A 4U6JA 2GU6A 3IG4A 2B3HA 1C27A 4Z7MA 2P98A 2BWWA 2Q96A 1YW9A 2V6CA 3MATA 1BOAA 1XGOA 1WBQA 2GG2A 4IF7A 1JAWA 2GG7A 4FO7A 4U69A 4U75A 1O0XA 2BWVA 3PKDA 5CNXA 2MATA 4PV4A 4FLJA 5CE6A 1XGNA 2ZSGA 3FMRA 4S2TP 3RVAA 2GU5A 5FCFA 2P99A 2EVMA 1WKMA 3IU9A 3FMQA 4U6CA 4R60A 4ZNGA 5JHUA 1YJ3A 4FKCA 2EVCA
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 1KQ0 A;  3BIP A;  3BIQ A;  3L7G A;  3IU7 A;  2G6P A;  2BWU A;  4IKS A;  2GTX A;  2V3Z A;  2BWX A;  2GG0 A;  1M35 A;  3D27 A;  1QXY A;  4MAT A;  4RZZ A;  2Q93 A;  2HOW A;  1B6A A;  2DFI A;  2BHC A;  1YW8 A;  3CB5 A;  4U71 A;  2OAZ A;  4U70 A;  1WL6 A;  2EA4 A;  4IU6 A;  4FLI A;  4S2R P;  2GU4 A;  1R5G A;  3S6B A;  5D6E A;  1Y1N A;  4IEC A;  1WY2 A;  3TB5 A;  1QXW A;  3MX6 A;  4A6W A;  1A16 A;  1YVM A;  1QXZ A;  4A6V A;  2Q94 A;  2EA2 A;  5JFR A;  3Q6D A;  1C23 A;  2NQ6 A;  2OKN A;  2BHD A;  4IKT A;  5CDE A;  2GG3 A;  1W2M A;  5FCH A;  4FLK A;  4IDY A;  4QR8 A;  1XGS A;  2BN7 A;  3BIT A;  3MR1 A;  4FLL A;  4IPA A;  1WN1 A;  5D6F A;  4S01 A;  1R58 A;  3CTZ A;  4IKR A;  4U73 A;  2GG9 A;  2B3L A;  1PV9 A;  1R5H A;  2V3Y A;  4U76 A;  4EGE A;  2Q92 A;  5CLS A;  2Q95 A;  4ZWO A;  2BHA A;  4FO8 A;  1XGM A;  1B59 A;  4RZY A;  4ZWU A;  5CDV A;  4KM3 A;  3IU8 A;  1WLR A;  3PKE A;  1C24 A;  3L24 A;  2GG8 A;  1KP0 A;  1C21 A;  2BWY A;  2Q8K A;  2BWS A;  4OOK A;  2GU7 A;  4S00 A;  5CIK A;  1MAT A;  2GGC A;  4ZWP A;  5CDL A;  4IKU A;  1YW7 A;  2EVO A;  1BN5 A;  5JI6 A;  3TAV A;  3PKB A;  4PNC A;  1N51 A;  4U6Z A;  4U1B A;  4U6E A;  2BHB A;  2BH3 A;  2P9A A;  1WL9 A;  1CHM A;  3ROR A;  2GZ5 A;  2BB7 A;  2BWT A;  4JUQ A;  2V3X A;  4B28 A;  4HXX A;  3PKC A;  2GG5 A;  2GGB A;  3FM3 A;  1W7V A;  1KQ9 A;  1XNZ A;  1C22 A;  2B3K A;  2IW2 A;  4FUK A;  5E5B A;  2GA2 A;  3PKA A;  4RGZ 1;  1QZY A;  2ADU A;  4U6W A;  3CB6 A;  2NQ7 A;  4U6J A;  2GU6 A;  3IG4 A;  2B3H A;  1C27 A;  4Z7M A;  2P98 A;  2BWW A;  2Q96 A;  1YW9 A;  2V6C A;  3MAT A;  1BOA A;  1XGO A;  1WBQ A;  2GG2 A;  4IF7 A;  1JAW A;  2GG7 A;  4FO7 A;  4U69 A;  4U75 A;  1O0X A;  2BWV A;  3PKD A;  5CNX A;  2MAT A;  4PV4 A;  4FLJ A;  5CE6 A;  1XGN A;  2ZSG A;  3FMR A;  4S2T P;  3RVA A;  2GU5 A;  5FCF A;  2P99 A;  2EVM A;  1WKM A;  3IU9 A;  3FMQ A;  4U6C A;  4R60 A;  4ZNG A;  5JHU A;  1YJ3 A;  4FKC A;  2EVC A; 
#chains in the Genus database with same CATH topology
 1KQ0 A;  3BIP A;  3BIQ A;  3L7G A;  3IU7 A;  2G6P A;  2BWU A;  4IKS A;  2GTX A;  2V3Z A;  2BWX A;  2GG0 A;  1M35 A;  3D27 A;  1QXY A;  4MAT A;  4RZZ A;  2Q93 A;  2HOW A;  1B6A A;  2DFI A;  2BHC A;  1YW8 A;  3CB5 A;  4U71 A;  2OAZ A;  4U70 A;  1WL6 A;  2EA4 A;  4IU6 A;  4FLI A;  4S2R P;  2GU4 A;  1R5G A;  3S6B A;  5D6E A;  1Y1N A;  4IEC A;  1WY2 A;  3TB5 A;  1QXW A;  3MX6 A;  4A6W A;  1A16 A;  1YVM A;  1QXZ A;  4A6V A;  2Q94 A;  2EA2 A;  5JFR A;  3Q6D A;  1C23 A;  2NQ6 A;  2OKN A;  2BHD A;  4IKT A;  5CDE A;  2GG3 A;  1W2M A;  5FCH A;  4FLK A;  4IDY A;  4QR8 A;  1XGS A;  2BN7 A;  3BIT A;  3MR1 A;  4FLL A;  4IPA A;  1WN1 A;  5D6F A;  4S01 A;  1R58 A;  3CTZ A;  4IKR A;  4U73 A;  2GG9 A;  2B3L A;  1PV9 A;  1R5H A;  2V3Y A;  4U76 A;  4EGE A;  2Q92 A;  5CLS A;  2Q95 A;  4ZWO A;  2BHA A;  4FO8 A;  1XGM A;  1B59 A;  4RZY A;  4ZWU A;  5CDV A;  4KM3 A;  3IU8 A;  1WLR A;  3PKE A;  1C24 A;  3L24 A;  2GG8 A;  1KP0 A;  1C21 A;  2BWY A;  2Q8K A;  2BWS A;  4OOK A;  2GU7 A;  4S00 A;  5CIK A;  1MAT A;  2GGC A;  4ZWP A;  5CDL A;  4IKU A;  1YW7 A;  2EVO A;  1BN5 A;  5JI6 A;  3TAV A;  3PKB A;  4PNC A;  1N51 A;  4U6Z A;  4U1B A;  4U6E A;  2BHB A;  2BH3 A;  2P9A A;  1WL9 A;  1CHM A;  3ROR A;  2GZ5 A;  2BB7 A;  2BWT A;  4JUQ A;  2V3X A;  4B28 A;  4HXX A;  3PKC A;  2GG5 A;  2GGB A;  3FM3 A;  1W7V A;  1KQ9 A;  1XNZ A;  1C22 A;  2B3K A;  2IW2 A;  4FUK A;  5E5B A;  2GA2 A;  3PKA A;  4RGZ 1;  1QZY A;  2ADU A;  4U6W A;  3CB6 A;  2NQ7 A;  4U6J A;  2GU6 A;  3IG4 A;  2B3H A;  1C27 A;  4Z7M A;  2P98 A;  2BWW A;  2Q96 A;  1YW9 A;  2V6C A;  3MAT A;  1BOA A;  1XGO A;  1WBQ A;  2GG2 A;  4IF7 A;  1JAW A;  2GG7 A;  4FO7 A;  4U69 A;  4U75 A;  1O0X A;  2BWV A;  3PKD A;  5CNX A;  2MAT A;  4PV4 A;  4FLJ A;  5CE6 A;  1XGN A;  2ZSG A;  3FMR A;  4S2T P;  3RVA A;  2GU5 A;  5FCF A;  2P99 A;  2EVM A;  1WKM A;  3IU9 A;  3FMQ A;  4U6C A;  4R60 A;  4ZNG A;  5JHU A;  1YJ3 A;  4FKC A;  2EVC A; 
#chains in the Genus database with same CATH homology
 1KQ0 A;  3BIP A;  3BIQ A;  3L7G A;  3IU7 A;  2G6P A;  2BWU A;  4IKS A;  2GTX A;  2V3Z A;  2BWX A;  2GG0 A;  1M35 A;  3D27 A;  1QXY A;  4MAT A;  4RZZ A;  2Q93 A;  2HOW A;  1B6A A;  2DFI A;  2BHC A;  1YW8 A;  3CB5 A;  4U71 A;  2OAZ A;  4U70 A;  1WL6 A;  2EA4 A;  4IU6 A;  4FLI A;  4S2R P;  2GU4 A;  1R5G A;  3S6B A;  5D6E A;  1Y1N A;  4IEC A;  1WY2 A;  3TB5 A;  1QXW A;  3MX6 A;  4A6W A;  1A16 A;  1YVM A;  1QXZ A;  4A6V A;  2Q94 A;  2EA2 A;  5JFR A;  3Q6D A;  1C23 A;  2NQ6 A;  2OKN A;  2BHD A;  4IKT A;  5CDE A;  2GG3 A;  1W2M A;  5FCH A;  4FLK A;  4IDY A;  4QR8 A;  1XGS A;  2BN7 A;  3BIT A;  3MR1 A;  4FLL A;  4IPA A;  1WN1 A;  5D6F A;  4S01 A;  1R58 A;  3CTZ A;  4IKR A;  4U73 A;  2GG9 A;  2B3L A;  1PV9 A;  1R5H A;  2V3Y A;  4U76 A;  4EGE A;  2Q92 A;  5CLS A;  2Q95 A;  4ZWO A;  2BHA A;  4FO8 A;  1XGM A;  1B59 A;  4RZY A;  4ZWU A;  5CDV A;  4KM3 A;  3IU8 A;  1WLR A;  3PKE A;  1C24 A;  3L24 A;  2GG8 A;  1KP0 A;  1C21 A;  2BWY A;  2Q8K A;  2BWS A;  4OOK A;  2GU7 A;  4S00 A;  5CIK A;  1MAT A;  2GGC A;  4ZWP A;  5CDL A;  4IKU A;  1YW7 A;  2EVO A;  1BN5 A;  5JI6 A;  3TAV A;  3PKB A;  4PNC A;  1N51 A;  4U6Z A;  4U1B A;  4U6E A;  2BHB A;  2BH3 A;  2P9A A;  1WL9 A;  1CHM A;  3ROR A;  2GZ5 A;  2BB7 A;  2BWT A;  4JUQ A;  2V3X A;  4B28 A;  4HXX A;  3PKC A;  2GG5 A;  2GGB A;  3FM3 A;  1W7V A;  1KQ9 A;  1XNZ A;  1C22 A;  2B3K A;  2IW2 A;  4FUK A;  5E5B A;  2GA2 A;  3PKA A;  4RGZ 1;  1QZY A;  2ADU A;  4U6W A;  3CB6 A;  2NQ7 A;  4U6J A;  2GU6 A;  3IG4 A;  2B3H A;  1C27 A;  4Z7M A;  2P98 A;  2BWW A;  2Q96 A;  1YW9 A;  2V6C A;  3MAT A;  1BOA A;  1XGO A;  1WBQ A;  2GG2 A;  4IF7 A;  1JAW A;  2GG7 A;  4FO7 A;  4U69 A;  4U75 A;  1O0X A;  2BWV A;  3PKD A;  5CNX A;  2MAT A;  4PV4 A;  4FLJ A;  5CE6 A;  1XGN A;  2ZSG A;  3FMR A;  4S2T P;  3RVA A;  2GU5 A;  5FCF A;  2P99 A;  2EVM A;  1WKM A;  3IU9 A;  3FMQ A;  4U6C A;  4R60 A;  4ZNG A;  5JHU A;  1YJ3 A;  4FKC A;  2EVC A;
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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