4KM3A

Discovery of a novel structural motif in methionine aminopeptidase from streptococci with possible post-translational modification
Total Genus 72
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
72
sequence length
286
structure length
286
Chain Sequence
b'MITLKSAREIEAMDKAGDFLASIHIGLRDLIKPGVDMWEVEEYVRRRCKEENFLPLQIGVDGAMMDYPYATCCSLNDEVAHAFPRHYILKDGDLLKVDMVLGGPIAKSDLNVSKLNFNNVEQMKKYTQSYSGGLADSCWAYAVGTPSEEVKNLMDITKEAMYKGIEQAVVGNRIGDIGAAIQEYAESRGYGVVRDLVGHGVGPTMHEEPMVPNYGIAGRGLRLREGMVLTIEPMINTGDWEIDTDMKTGWAHKTIDGGLSCQYEHQFVITKDGPVILTSQGEEGTY'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Discovery of a new genetic variant of methionine aminopeptidase from streptococci with possible post-translational modifications: biochemical and structural characterization.
pubmed doi rcsb
molecule keywords Methionine aminopeptidase
source organism Streptococcus pneumoniae
molecule tags Hydrolase
total genus 72
structure length 286
sequence length 286
chains with identical sequence B
ec nomenclature
pdb deposition date 2013-05-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00557 Peptidase_M24 Metallopeptidase family M24
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.230.10 Alpha Beta Alpha-Beta Complex Creatine Amidinohydrolase Creatinase/methionine aminopeptidase superfamily 4km3A00
2BWUA 1XGOA 1XGMA 2GU4A 1PV9A 5FCFA 4IU6A 5D6EA 1XGNA 3PKEA 4PNCA 3IG4A 1QXWA 1WLRA 2Q8KA 2GA2A 1W7VA 1KQ9A 2BN7A 3BIQA 1MATA 2BHAA 2GZ5A 2GU5A 5E5BA 2GGCA 4U6JA 4A6WA 4Z7MA 1YJ3A 3L24A 2EVOA 2BWTA 2GG3A 2Q94A 3CTZA 2P9AA 4FKCA 5JHUA 1KP0A 1BN5A 1QZYA 1WY2A 4U75A 1CHMA 1WN1A 4MATA 1W2MA 1B6AA 2EA4A 4U76A 1C24A 2B3HA 5CDVA 4FLIA 2BWWA 5CNXA 1WBQA 2EVMA 3D27A 2BB7A 2B3LA 4IPAA 2B3KA 2P98A 4IKUA 2MATA 5CDLA 3TB5A 1BOAA 2BH3A 2GG5A 2P99A 4RGZ1 4S01A 1WKMA 2HOWA 1YVMA 4A6VA 1KQ0A 4ZWOA 1JAWA 4B28A 5FCHA 5CE6A 2OAZA 3CB6A 2EA2A 2V6CA 4U71A 4QR8A 4U1BA 2DFIA 1YW8A 1XNZA 1C21A 3PKBA 3S6BA 4IKSA 3BITA 3MR1A 2ZSGA 4FLKA 4S00A 1Y1NA 4FO7A 4IF7A 1R5HA 4FLLA 2GGBA 1O0XA 4R60A 1R58A 2BHBA 5JFRA 3Q6DA 2Q92A 2Q96A 1M35A 3CB5A 3FM3A 2BHCA 2IW2A 4U70A 1XGSA 1C22A 2EVCA 5CLSA 3IU8A 3FMRA 1WL6A 1C27A 3TAVA 1WL9A 5D6FA 2BWVA 4ZWPA 2V3XA 2ADUA 2BHDA 2V3YA 5JI6A 2Q95A 4IECA 3FMQA 4IKTA 1C23A 4U73A 4U6WA 2GG0A 4U6EA 3PKAA 2BWYA 4U6ZA 4JUQA 1R5GA 4OOKA 4HXXA 4RZYA 3MATA 2NQ7A 1B59A 4IKRA 2GG9A 4FLJA 2OKNA 4PV4A 4RZZA 2G6PA 4ZNGA 4ZWUA 3BIPA 2BWSA 3PKCA 3L7GA 2GG8A 3PKDA 1YW9A 1A16A 3IU7A 2NQ6A 4U6CA 1N51A 2Q93A 2GU7A 4S2TP 4FUKA 1YW7A 2V3ZA 5CIKA 2GG7A 2GTXA 1QXYA 1QXZA 3MX6A 2GU6A 4KM3A 2GG2A 3RVAA 3RORA 4EGEA 4IDYA 5CDEA 2BWXA 4S2RP 4FO8A 3IU9A 4U69A
chains in the Genus database with same CATH superfamily
2BWUA 1XGOA 1XGMA 2GU4A 1PV9A 5FCFA 4IU6A 5D6EA 1XGNA 3PKEA 4PNCA 3IG4A 1QXWA 1WLRA 2Q8KA 2GA2A 1W7VA 1KQ9A 2BN7A 3BIQA 1MATA 2BHAA 2GZ5A 2GU5A 5E5BA 2GGCA 4U6JA 4A6WA 4Z7MA 1YJ3A 3L24A 2EVOA 2BWTA 2GG3A 2Q94A 3CTZA 2P9AA 4FKCA 5JHUA 1KP0A 1BN5A 1QZYA 1WY2A 4U75A 1CHMA 1WN1A 4MATA 1W2MA 1B6AA 2EA4A 4U76A 1C24A 2B3HA 5CDVA 4FLIA 2BWWA 5CNXA 1WBQA 2EVMA 3D27A 2BB7A 2B3LA 4IPAA 2B3KA 2P98A 4IKUA 2MATA 5CDLA 3TB5A 1BOAA 2BH3A 2GG5A 2P99A 4RGZ1 4S01A 1WKMA 2HOWA 1YVMA 4A6VA 1KQ0A 4ZWOA 1JAWA 4B28A 5FCHA 5CE6A 2OAZA 3CB6A 2EA2A 2V6CA 4U71A 4QR8A 4U1BA 2DFIA 1YW8A 1XNZA 1C21A 3PKBA 3S6BA 4IKSA 3BITA 3MR1A 2ZSGA 4FLKA 4S00A 1Y1NA 4FO7A 4IF7A 1R5HA 4FLLA 2GGBA 1O0XA 4R60A 1R58A 2BHBA 5JFRA 3Q6DA 2Q92A 2Q96A 1M35A 3CB5A 3FM3A 2BHCA 2IW2A 4U70A 1XGSA 1C22A 2EVCA 5CLSA 3IU8A 3FMRA 1WL6A 1C27A 3TAVA 1WL9A 5D6FA 2BWVA 4ZWPA 2V3XA 2ADUA 2BHDA 2V3YA 5JI6A 2Q95A 4IECA 3FMQA 4IKTA 1C23A 4U73A 4U6WA 2GG0A 4U6EA 3PKAA 2BWYA 4U6ZA 4JUQA 1R5GA 4OOKA 4HXXA 4RZYA 3MATA 2NQ7A 1B59A 4IKRA 2GG9A 4FLJA 2OKNA 4PV4A 4RZZA 2G6PA 4ZNGA 4ZWUA 3BIPA 2BWSA 3PKCA 3L7GA 2GG8A 3PKDA 1YW9A 1A16A 3IU7A 2NQ6A 4U6CA 1N51A 2Q93A 2GU7A 4S2TP 4FUKA 1YW7A 2V3ZA 5CIKA 2GG7A 2GTXA 1QXYA 1QXZA 3MX6A 2GU6A 4KM3A 2GG2A 3RVAA 3RORA 4EGEA 4IDYA 5CDEA 2BWXA 4S2RP 4FO8A 3IU9A 4U69A
chains in the Genus database with same CATH topology
2BWUA 1XGOA 1XGMA 2GU4A 1PV9A 5FCFA 4IU6A 5D6EA 1XGNA 3PKEA 4PNCA 3IG4A 1QXWA 1WLRA 2Q8KA 2GA2A 1W7VA 1KQ9A 2BN7A 3BIQA 1MATA 2BHAA 2GZ5A 2GU5A 5E5BA 2GGCA 4U6JA 4A6WA 4Z7MA 1YJ3A 3L24A 2EVOA 2BWTA 2GG3A 2Q94A 3CTZA 2P9AA 4FKCA 5JHUA 1KP0A 1BN5A 1QZYA 1WY2A 4U75A 1CHMA 1WN1A 4MATA 1W2MA 1B6AA 2EA4A 4U76A 1C24A 2B3HA 5CDVA 4FLIA 2BWWA 5CNXA 1WBQA 2EVMA 3D27A 2BB7A 2B3LA 4IPAA 2B3KA 2P98A 4IKUA 2MATA 5CDLA 3TB5A 1BOAA 2BH3A 2GG5A 2P99A 4RGZ1 4S01A 1WKMA 2HOWA 1YVMA 4A6VA 1KQ0A 4ZWOA 1JAWA 4B28A 5FCHA 5CE6A 2OAZA 3CB6A 2EA2A 2V6CA 4U71A 4QR8A 4U1BA 2DFIA 1YW8A 1XNZA 1C21A 3PKBA 3S6BA 4IKSA 3BITA 3MR1A 2ZSGA 4FLKA 4S00A 1Y1NA 4FO7A 4IF7A 1R5HA 4FLLA 2GGBA 1O0XA 4R60A 1R58A 2BHBA 5JFRA 3Q6DA 2Q92A 2Q96A 1M35A 3CB5A 3FM3A 2BHCA 2IW2A 4U70A 1XGSA 1C22A 2EVCA 5CLSA 3IU8A 3FMRA 1WL6A 1C27A 3TAVA 1WL9A 5D6FA 2BWVA 4ZWPA 2V3XA 2ADUA 2BHDA 2V3YA 5JI6A 2Q95A 4IECA 3FMQA 4IKTA 1C23A 4U73A 4U6WA 2GG0A 4U6EA 3PKAA 2BWYA 4U6ZA 4JUQA 1R5GA 4OOKA 4HXXA 4RZYA 3MATA 2NQ7A 1B59A 4IKRA 2GG9A 4FLJA 2OKNA 4PV4A 4RZZA 2G6PA 4ZNGA 4ZWUA 3BIPA 2BWSA 3PKCA 3L7GA 2GG8A 3PKDA 1YW9A 1A16A 3IU7A 2NQ6A 4U6CA 1N51A 2Q93A 2GU7A 4S2TP 4FUKA 1YW7A 2V3ZA 5CIKA 2GG7A 2GTXA 1QXYA 1QXZA 3MX6A 2GU6A 4KM3A 2GG2A 3RVAA 3RORA 4EGEA 4IDYA 5CDEA 2BWXA 4S2RP 4FO8A 3IU9A 4U69A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2BWU A;  1XGO A;  1XGM A;  2GU4 A;  1PV9 A;  5FCF A;  4IU6 A;  5D6E A;  1XGN A;  3PKE A;  4PNC A;  3IG4 A;  1QXW A;  1WLR A;  2Q8K A;  2GA2 A;  1W7V A;  1KQ9 A;  2BN7 A;  3BIQ A;  1MAT A;  2BHA A;  2GZ5 A;  2GU5 A;  5E5B A;  2GGC A;  4U6J A;  4A6W A;  4Z7M A;  1YJ3 A;  3L24 A;  2EVO A;  2BWT A;  2GG3 A;  2Q94 A;  3CTZ A;  2P9A A;  4FKC A;  5JHU A;  1KP0 A;  1BN5 A;  1QZY A;  1WY2 A;  4U75 A;  1CHM A;  1WN1 A;  4MAT A;  1W2M A;  1B6A A;  2EA4 A;  4U76 A;  1C24 A;  2B3H A;  5CDV A;  4FLI A;  2BWW A;  5CNX A;  1WBQ A;  2EVM A;  3D27 A;  2BB7 A;  2B3L A;  4IPA A;  2B3K A;  2P98 A;  4IKU A;  2MAT A;  5CDL A;  3TB5 A;  1BOA A;  2BH3 A;  2GG5 A;  2P99 A;  4RGZ 1;  4S01 A;  1WKM A;  2HOW A;  1YVM A;  4A6V A;  1KQ0 A;  4ZWO A;  1JAW A;  4B28 A;  5FCH A;  5CE6 A;  2OAZ A;  3CB6 A;  2EA2 A;  2V6C A;  4U71 A;  4QR8 A;  4U1B A;  2DFI A;  1YW8 A;  1XNZ A;  1C21 A;  3PKB A;  3S6B A;  4IKS A;  3BIT A;  3MR1 A;  2ZSG A;  4FLK A;  4S00 A;  1Y1N A;  4FO7 A;  4IF7 A;  1R5H A;  4FLL A;  2GGB A;  1O0X A;  4R60 A;  1R58 A;  2BHB A;  5JFR A;  3Q6D A;  2Q92 A;  2Q96 A;  1M35 A;  3CB5 A;  3FM3 A;  2BHC A;  2IW2 A;  4U70 A;  1XGS A;  1C22 A;  2EVC A;  5CLS A;  3IU8 A;  3FMR A;  1WL6 A;  1C27 A;  3TAV A;  1WL9 A;  5D6F A;  2BWV A;  4ZWP A;  2V3X A;  2ADU A;  2BHD A;  2V3Y A;  5JI6 A;  2Q95 A;  4IEC A;  3FMQ A;  4IKT A;  1C23 A;  4U73 A;  4U6W A;  2GG0 A;  4U6E A;  3PKA A;  2BWY A;  4U6Z A;  4JUQ A;  1R5G A;  4OOK A;  4HXX A;  4RZY A;  3MAT A;  2NQ7 A;  1B59 A;  4IKR A;  2GG9 A;  4FLJ A;  2OKN A;  4PV4 A;  4RZZ A;  2G6P A;  4ZNG A;  4ZWU A;  3BIP A;  2BWS A;  3PKC A;  3L7G A;  2GG8 A;  3PKD A;  1YW9 A;  1A16 A;  3IU7 A;  2NQ6 A;  4U6C A;  1N51 A;  2Q93 A;  2GU7 A;  4S2T P;  4FUK A;  1YW7 A;  2V3Z A;  5CIK A;  2GG7 A;  2GTX A;  1QXY A;  1QXZ A;  3MX6 A;  2GU6 A;  4KM3 A;  2GG2 A;  3RVA A;  3ROR A;  4EGE A;  4IDY A;  5CDE A;  2BWX A;  4S2R P;  4FO8 A;  3IU9 A;  4U69 A; 
#chains in the Genus database with same CATH topology
 2BWU A;  1XGO A;  1XGM A;  2GU4 A;  1PV9 A;  5FCF A;  4IU6 A;  5D6E A;  1XGN A;  3PKE A;  4PNC A;  3IG4 A;  1QXW A;  1WLR A;  2Q8K A;  2GA2 A;  1W7V A;  1KQ9 A;  2BN7 A;  3BIQ A;  1MAT A;  2BHA A;  2GZ5 A;  2GU5 A;  5E5B A;  2GGC A;  4U6J A;  4A6W A;  4Z7M A;  1YJ3 A;  3L24 A;  2EVO A;  2BWT A;  2GG3 A;  2Q94 A;  3CTZ A;  2P9A A;  4FKC A;  5JHU A;  1KP0 A;  1BN5 A;  1QZY A;  1WY2 A;  4U75 A;  1CHM A;  1WN1 A;  4MAT A;  1W2M A;  1B6A A;  2EA4 A;  4U76 A;  1C24 A;  2B3H A;  5CDV A;  4FLI A;  2BWW A;  5CNX A;  1WBQ A;  2EVM A;  3D27 A;  2BB7 A;  2B3L A;  4IPA A;  2B3K A;  2P98 A;  4IKU A;  2MAT A;  5CDL A;  3TB5 A;  1BOA A;  2BH3 A;  2GG5 A;  2P99 A;  4RGZ 1;  4S01 A;  1WKM A;  2HOW A;  1YVM A;  4A6V A;  1KQ0 A;  4ZWO A;  1JAW A;  4B28 A;  5FCH A;  5CE6 A;  2OAZ A;  3CB6 A;  2EA2 A;  2V6C A;  4U71 A;  4QR8 A;  4U1B A;  2DFI A;  1YW8 A;  1XNZ A;  1C21 A;  3PKB A;  3S6B A;  4IKS A;  3BIT A;  3MR1 A;  2ZSG A;  4FLK A;  4S00 A;  1Y1N A;  4FO7 A;  4IF7 A;  1R5H A;  4FLL A;  2GGB A;  1O0X A;  4R60 A;  1R58 A;  2BHB A;  5JFR A;  3Q6D A;  2Q92 A;  2Q96 A;  1M35 A;  3CB5 A;  3FM3 A;  2BHC A;  2IW2 A;  4U70 A;  1XGS A;  1C22 A;  2EVC A;  5CLS A;  3IU8 A;  3FMR A;  1WL6 A;  1C27 A;  3TAV A;  1WL9 A;  5D6F A;  2BWV A;  4ZWP A;  2V3X A;  2ADU A;  2BHD A;  2V3Y A;  5JI6 A;  2Q95 A;  4IEC A;  3FMQ A;  4IKT A;  1C23 A;  4U73 A;  4U6W A;  2GG0 A;  4U6E A;  3PKA A;  2BWY A;  4U6Z A;  4JUQ A;  1R5G A;  4OOK A;  4HXX A;  4RZY A;  3MAT A;  2NQ7 A;  1B59 A;  4IKR A;  2GG9 A;  4FLJ A;  2OKN A;  4PV4 A;  4RZZ A;  2G6P A;  4ZNG A;  4ZWU A;  3BIP A;  2BWS A;  3PKC A;  3L7G A;  2GG8 A;  3PKD A;  1YW9 A;  1A16 A;  3IU7 A;  2NQ6 A;  4U6C A;  1N51 A;  2Q93 A;  2GU7 A;  4S2T P;  4FUK A;  1YW7 A;  2V3Z A;  5CIK A;  2GG7 A;  2GTX A;  1QXY A;  1QXZ A;  3MX6 A;  2GU6 A;  4KM3 A;  2GG2 A;  3RVA A;  3ROR A;  4EGE A;  4IDY A;  5CDE A;  2BWX A;  4S2R P;  4FO8 A;  3IU9 A;  4U69 A; 
#chains in the Genus database with same CATH homology
 2BWU A;  1XGO A;  1XGM A;  2GU4 A;  1PV9 A;  5FCF A;  4IU6 A;  5D6E A;  1XGN A;  3PKE A;  4PNC A;  3IG4 A;  1QXW A;  1WLR A;  2Q8K A;  2GA2 A;  1W7V A;  1KQ9 A;  2BN7 A;  3BIQ A;  1MAT A;  2BHA A;  2GZ5 A;  2GU5 A;  5E5B A;  2GGC A;  4U6J A;  4A6W A;  4Z7M A;  1YJ3 A;  3L24 A;  2EVO A;  2BWT A;  2GG3 A;  2Q94 A;  3CTZ A;  2P9A A;  4FKC A;  5JHU A;  1KP0 A;  1BN5 A;  1QZY A;  1WY2 A;  4U75 A;  1CHM A;  1WN1 A;  4MAT A;  1W2M A;  1B6A A;  2EA4 A;  4U76 A;  1C24 A;  2B3H A;  5CDV A;  4FLI A;  2BWW A;  5CNX A;  1WBQ A;  2EVM A;  3D27 A;  2BB7 A;  2B3L A;  4IPA A;  2B3K A;  2P98 A;  4IKU A;  2MAT A;  5CDL A;  3TB5 A;  1BOA A;  2BH3 A;  2GG5 A;  2P99 A;  4RGZ 1;  4S01 A;  1WKM A;  2HOW A;  1YVM A;  4A6V A;  1KQ0 A;  4ZWO A;  1JAW A;  4B28 A;  5FCH A;  5CE6 A;  2OAZ A;  3CB6 A;  2EA2 A;  2V6C A;  4U71 A;  4QR8 A;  4U1B A;  2DFI A;  1YW8 A;  1XNZ A;  1C21 A;  3PKB A;  3S6B A;  4IKS A;  3BIT A;  3MR1 A;  2ZSG A;  4FLK A;  4S00 A;  1Y1N A;  4FO7 A;  4IF7 A;  1R5H A;  4FLL A;  2GGB A;  1O0X A;  4R60 A;  1R58 A;  2BHB A;  5JFR A;  3Q6D A;  2Q92 A;  2Q96 A;  1M35 A;  3CB5 A;  3FM3 A;  2BHC A;  2IW2 A;  4U70 A;  1XGS A;  1C22 A;  2EVC A;  5CLS A;  3IU8 A;  3FMR A;  1WL6 A;  1C27 A;  3TAV A;  1WL9 A;  5D6F A;  2BWV A;  4ZWP A;  2V3X A;  2ADU A;  2BHD A;  2V3Y A;  5JI6 A;  2Q95 A;  4IEC A;  3FMQ A;  4IKT A;  1C23 A;  4U73 A;  4U6W A;  2GG0 A;  4U6E A;  3PKA A;  2BWY A;  4U6Z A;  4JUQ A;  1R5G A;  4OOK A;  4HXX A;  4RZY A;  3MAT A;  2NQ7 A;  1B59 A;  4IKR A;  2GG9 A;  4FLJ A;  2OKN A;  4PV4 A;  4RZZ A;  2G6P A;  4ZNG A;  4ZWU A;  3BIP A;  2BWS A;  3PKC A;  3L7G A;  2GG8 A;  3PKD A;  1YW9 A;  1A16 A;  3IU7 A;  2NQ6 A;  4U6C A;  1N51 A;  2Q93 A;  2GU7 A;  4S2T P;  4FUK A;  1YW7 A;  2V3Z A;  5CIK A;  2GG7 A;  2GTX A;  1QXY A;  1QXZ A;  3MX6 A;  2GU6 A;  4KM3 A;  2GG2 A;  3RVA A;  3ROR A;  4EGE A;  4IDY A;  5CDE A;  2BWX A;  4S2R P;  4FO8 A;  3IU9 A;  4U69 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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