4KM3A

Discovery of a novel structural motif in methionine aminopeptidase from streptococci with possible post-translational modification
Total Genus 72
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
72
sequence length
286
structure length
286
Chain Sequence
MITLKSAREIEAMDKAGDFLASIHIGLRDLIKPGVDMWEVEEYVRRRCKEENFLPLQIGVDGAMMDYPYATCCSLNDEVAHAFPRHYILKDGDLLKVDMVLGGPIAKSDLNVSKLNFNNVEQMKKYTQSYSGGLADSCWAYAVGTPSEEVKNLMDITKEAMYKGIEQAVVGNRIGDIGAAIQEYAESRGYGVVRDLVGHGVGPTMHEEPMVPNYGIAGRGLRLREGMVLTIEPMINTGDWEIDTDMKTGWAHKTIDGGLSCQYEHQFVITKDGPVILTSQGEEGTY
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
source organism Streptococcus pneumoniae
publication title Discovery of a new genetic variant of methionine aminopeptidase from streptococci with possible post-translational modifications: biochemical and structural characterization.
pubmed doi rcsb
molecule keywords Methionine aminopeptidase
total genus 72
structure length 286
sequence length 286
chains with identical sequence B
ec nomenclature
pdb deposition date 2013-05-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00557 Peptidase_M24 Metallopeptidase family M24
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.230.10 Alpha Beta Alpha-Beta Complex Creatine Amidinohydrolase Creatinase/methionine aminopeptidase superfamily 4km3A00
3IG4A 2GA2A 3MR1A 5E5BA 1WY2A 2GG9A 1WN1A 2GZ5A 2Q93A 3CTZA 2G6PA 4IF7A 4ZWUA 2Q94A 4FLLA 4B28A 3IU9A 2V3YA 4U76A 5CIKA 1Y1NA 2ADUA 4A6VA 1WL6A 2V3XA 2GG7A 3MX6A 3Q6DA 3PKDA 2P98A 2GU7A 1QXYA 1W2MA 5CNXA 5D6FA 4A6WA 1WBQA 4PNCA 1KQ0A 2BWWA 5JFRA 4U6EA 4KM3A 4R60A 3BIQA 5CDLA 3IU8A 4IKTA 4FLJA 2EVMA 2GG0A 1C22A 2DFIA 4OOKA 4ZWOA 5CDVA 2BWUA 1YW7A 2BHDA 4U6WA 4EGEA 1YW9A 1M35A 1XGSA 1BN5A 2B3HA 3RVAA 1C24A 3PKCA 3D27A 4FO7A 4FUKA 2BHAA 3FMQA 5JHUA 3MATA 1QXZA 3TB5A 2BWTA 4IECA 2GG3A 1B59A 1C21A 2OAZA 2Q95A 1O0XA 3IU7A 4QR8A 4IPAA 4FO8A 3L24A 4S2TP 5D6EA 1W7VA 2BWYA 2BN7A 2Q96A 2GU5A 4U69A 2Q92A 2GGBA 1XNZA 3PKEA 4U70A 5FCHA 4ZNGA 1CHMA 2BWSA 4PV4A 3L7GA 1KP0A 5JI6A 2EVCA 5CDEA 4RZZA 4IDYA 1N51A 1R58A 2BH3A 4U75A 1JAWA 2P9AA 4U6ZA 1YW8A 2BWXA 1MATA 4U6CA 3RORA 2BB7A 2BHBA 4FLIA 4RZYA 2NQ6A 1B6AA 2ZSGA 1QZYA 2GG2A 1QXWA 2EVOA 1XGNA 4IU6A 4U6JA 2Q8KA 2HOWA 2MATA 3TAVA 4U1BA 4RGZ1 1KQ9A 3PKAA 2GG5A 2GU6A 4HXXA 5FCFA 2NQ7A 3PKBA 4ZWPA 2GU4A 2BWVA 1PV9A 2V3ZA 1C27A 4IKSA 4Z7MA 2OKNA 3CB6A 2P99A 2GGCA 1XGOA 1WKMA 1C23A 1YVMA 4IKRA 1WLRA 2B3LA 3FM3A 1XGMA 2EA2A 4S00A 3BITA 4U71A 4JUQA 1YJ3A 2B3KA 2EA4A 2GTXA 4FLKA 4MATA 4S2RP 1R5HA 4IKUA 2IW2A 2GG8A 1R5GA 4FKCA 1WL9A 5CLSA 1BOAA 3S6BA 5CE6A 4U73A 3CB5A 4S01A 1A16A 3BIPA 2BHCA 2V6CA 3FMRA
chains in the Genus database with same CATH superfamily
3IG4A 2GA2A 3MR1A 5E5BA 1WY2A 2GG9A 1WN1A 2GZ5A 2Q93A 3CTZA 2G6PA 4IF7A 4ZWUA 2Q94A 4FLLA 4B28A 3IU9A 2V3YA 4U76A 5CIKA 1Y1NA 2ADUA 4A6VA 1WL6A 2V3XA 2GG7A 3MX6A 3Q6DA 3PKDA 2P98A 2GU7A 1QXYA 1W2MA 5CNXA 5D6FA 4A6WA 1WBQA 4PNCA 1KQ0A 2BWWA 5JFRA 4U6EA 4KM3A 4R60A 3BIQA 5CDLA 3IU8A 4IKTA 4FLJA 2EVMA 2GG0A 1C22A 2DFIA 4OOKA 4ZWOA 5CDVA 2BWUA 1YW7A 2BHDA 4U6WA 4EGEA 1YW9A 1M35A 1XGSA 1BN5A 2B3HA 3RVAA 1C24A 3PKCA 3D27A 4FO7A 4FUKA 2BHAA 3FMQA 5JHUA 3MATA 1QXZA 3TB5A 2BWTA 4IECA 2GG3A 1B59A 1C21A 2OAZA 2Q95A 1O0XA 3IU7A 4QR8A 4IPAA 4FO8A 3L24A 4S2TP 5D6EA 1W7VA 2BWYA 2BN7A 2Q96A 2GU5A 4U69A 2Q92A 2GGBA 1XNZA 3PKEA 4U70A 5FCHA 4ZNGA 1CHMA 2BWSA 4PV4A 3L7GA 1KP0A 5JI6A 2EVCA 5CDEA 4RZZA 4IDYA 1N51A 1R58A 2BH3A 4U75A 1JAWA 2P9AA 4U6ZA 1YW8A 2BWXA 1MATA 4U6CA 3RORA 2BB7A 2BHBA 4FLIA 4RZYA 2NQ6A 1B6AA 2ZSGA 1QZYA 2GG2A 1QXWA 2EVOA 1XGNA 4IU6A 4U6JA 2Q8KA 2HOWA 2MATA 3TAVA 4U1BA 4RGZ1 1KQ9A 3PKAA 2GG5A 2GU6A 4HXXA 5FCFA 2NQ7A 3PKBA 4ZWPA 2GU4A 2BWVA 1PV9A 2V3ZA 1C27A 4IKSA 4Z7MA 2OKNA 3CB6A 2P99A 2GGCA 1XGOA 1WKMA 1C23A 1YVMA 4IKRA 1WLRA 2B3LA 3FM3A 1XGMA 2EA2A 4S00A 3BITA 4U71A 4JUQA 1YJ3A 2B3KA 2EA4A 2GTXA 4FLKA 4MATA 4S2RP 1R5HA 4IKUA 2IW2A 2GG8A 1R5GA 4FKCA 1WL9A 5CLSA 1BOAA 3S6BA 5CE6A 4U73A 3CB5A 4S01A 1A16A 3BIPA 2BHCA 2V6CA 3FMRA
chains in the Genus database with same CATH topology
3IG4A 2GA2A 3MR1A 5E5BA 1WY2A 2GG9A 1WN1A 2GZ5A 2Q93A 3CTZA 2G6PA 4IF7A 4ZWUA 2Q94A 4FLLA 4B28A 3IU9A 2V3YA 4U76A 5CIKA 1Y1NA 2ADUA 4A6VA 1WL6A 2V3XA 2GG7A 3MX6A 3Q6DA 3PKDA 2P98A 2GU7A 1QXYA 1W2MA 5CNXA 5D6FA 4A6WA 1WBQA 4PNCA 1KQ0A 2BWWA 5JFRA 4U6EA 4KM3A 4R60A 3BIQA 5CDLA 3IU8A 4IKTA 4FLJA 2EVMA 2GG0A 1C22A 2DFIA 4OOKA 4ZWOA 5CDVA 2BWUA 1YW7A 2BHDA 4U6WA 4EGEA 1YW9A 1M35A 1XGSA 1BN5A 2B3HA 3RVAA 1C24A 3PKCA 3D27A 4FO7A 4FUKA 2BHAA 3FMQA 5JHUA 3MATA 1QXZA 3TB5A 2BWTA 4IECA 2GG3A 1B59A 1C21A 2OAZA 2Q95A 1O0XA 3IU7A 4QR8A 4IPAA 4FO8A 3L24A 4S2TP 5D6EA 1W7VA 2BWYA 2BN7A 2Q96A 2GU5A 4U69A 2Q92A 2GGBA 1XNZA 3PKEA 4U70A 5FCHA 4ZNGA 1CHMA 2BWSA 4PV4A 3L7GA 1KP0A 5JI6A 2EVCA 5CDEA 4RZZA 4IDYA 1N51A 1R58A 2BH3A 4U75A 1JAWA 2P9AA 4U6ZA 1YW8A 2BWXA 1MATA 4U6CA 3RORA 2BB7A 2BHBA 4FLIA 4RZYA 2NQ6A 1B6AA 2ZSGA 1QZYA 2GG2A 1QXWA 2EVOA 1XGNA 4IU6A 4U6JA 2Q8KA 2HOWA 2MATA 3TAVA 4U1BA 4RGZ1 1KQ9A 3PKAA 2GG5A 2GU6A 4HXXA 5FCFA 2NQ7A 3PKBA 4ZWPA 2GU4A 2BWVA 1PV9A 2V3ZA 1C27A 4IKSA 4Z7MA 2OKNA 3CB6A 2P99A 2GGCA 1XGOA 1WKMA 1C23A 1YVMA 4IKRA 1WLRA 2B3LA 3FM3A 1XGMA 2EA2A 4S00A 3BITA 4U71A 4JUQA 1YJ3A 2B3KA 2EA4A 2GTXA 4FLKA 4MATA 4S2RP 1R5HA 4IKUA 2IW2A 2GG8A 1R5GA 4FKCA 1WL9A 5CLSA 1BOAA 3S6BA 5CE6A 4U73A 3CB5A 4S01A 1A16A 3BIPA 2BHCA 2V6CA 3FMRA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3IG4 A;  2GA2 A;  3MR1 A;  5E5B A;  1WY2 A;  2GG9 A;  1WN1 A;  2GZ5 A;  2Q93 A;  3CTZ A;  2G6P A;  4IF7 A;  4ZWU A;  2Q94 A;  4FLL A;  4B28 A;  3IU9 A;  2V3Y A;  4U76 A;  5CIK A;  1Y1N A;  2ADU A;  4A6V A;  1WL6 A;  2V3X A;  2GG7 A;  3MX6 A;  3Q6D A;  3PKD A;  2P98 A;  2GU7 A;  1QXY A;  1W2M A;  5CNX A;  5D6F A;  4A6W A;  1WBQ A;  4PNC A;  1KQ0 A;  2BWW A;  5JFR A;  4U6E A;  4KM3 A;  4R60 A;  3BIQ A;  5CDL A;  3IU8 A;  4IKT A;  4FLJ A;  2EVM A;  2GG0 A;  1C22 A;  2DFI A;  4OOK A;  4ZWO A;  5CDV A;  2BWU A;  1YW7 A;  2BHD A;  4U6W A;  4EGE A;  1YW9 A;  1M35 A;  1XGS A;  1BN5 A;  2B3H A;  3RVA A;  1C24 A;  3PKC A;  3D27 A;  4FO7 A;  4FUK A;  2BHA A;  3FMQ A;  5JHU A;  3MAT A;  1QXZ A;  3TB5 A;  2BWT A;  4IEC A;  2GG3 A;  1B59 A;  1C21 A;  2OAZ A;  2Q95 A;  1O0X A;  3IU7 A;  4QR8 A;  4IPA A;  4FO8 A;  3L24 A;  4S2T P;  5D6E A;  1W7V A;  2BWY A;  2BN7 A;  2Q96 A;  2GU5 A;  4U69 A;  2Q92 A;  2GGB A;  1XNZ A;  3PKE A;  4U70 A;  5FCH A;  4ZNG A;  1CHM A;  2BWS A;  4PV4 A;  3L7G A;  1KP0 A;  5JI6 A;  2EVC A;  5CDE A;  4RZZ A;  4IDY A;  1N51 A;  1R58 A;  2BH3 A;  4U75 A;  1JAW A;  2P9A A;  4U6Z A;  1YW8 A;  2BWX A;  1MAT A;  4U6C A;  3ROR A;  2BB7 A;  2BHB A;  4FLI A;  4RZY A;  2NQ6 A;  1B6A A;  2ZSG A;  1QZY A;  2GG2 A;  1QXW A;  2EVO A;  1XGN A;  4IU6 A;  4U6J A;  2Q8K A;  2HOW A;  2MAT A;  3TAV A;  4U1B A;  4RGZ 1;  1KQ9 A;  3PKA A;  2GG5 A;  2GU6 A;  4HXX A;  5FCF A;  2NQ7 A;  3PKB A;  4ZWP A;  2GU4 A;  2BWV A;  1PV9 A;  2V3Z A;  1C27 A;  4IKS A;  4Z7M A;  2OKN A;  3CB6 A;  2P99 A;  2GGC A;  1XGO A;  1WKM A;  1C23 A;  1YVM A;  4IKR A;  1WLR A;  2B3L A;  3FM3 A;  1XGM A;  2EA2 A;  4S00 A;  3BIT A;  4U71 A;  4JUQ A;  1YJ3 A;  2B3K A;  2EA4 A;  2GTX A;  4FLK A;  4MAT A;  4S2R P;  1R5H A;  4IKU A;  2IW2 A;  2GG8 A;  1R5G A;  4FKC A;  1WL9 A;  5CLS A;  1BOA A;  3S6B A;  5CE6 A;  4U73 A;  3CB5 A;  4S01 A;  1A16 A;  3BIP A;  2BHC A;  2V6C A;  3FMR A; 
#chains in the Genus database with same CATH topology
 3IG4 A;  2GA2 A;  3MR1 A;  5E5B A;  1WY2 A;  2GG9 A;  1WN1 A;  2GZ5 A;  2Q93 A;  3CTZ A;  2G6P A;  4IF7 A;  4ZWU A;  2Q94 A;  4FLL A;  4B28 A;  3IU9 A;  2V3Y A;  4U76 A;  5CIK A;  1Y1N A;  2ADU A;  4A6V A;  1WL6 A;  2V3X A;  2GG7 A;  3MX6 A;  3Q6D A;  3PKD A;  2P98 A;  2GU7 A;  1QXY A;  1W2M A;  5CNX A;  5D6F A;  4A6W A;  1WBQ A;  4PNC A;  1KQ0 A;  2BWW A;  5JFR A;  4U6E A;  4KM3 A;  4R60 A;  3BIQ A;  5CDL A;  3IU8 A;  4IKT A;  4FLJ A;  2EVM A;  2GG0 A;  1C22 A;  2DFI A;  4OOK A;  4ZWO A;  5CDV A;  2BWU A;  1YW7 A;  2BHD A;  4U6W A;  4EGE A;  1YW9 A;  1M35 A;  1XGS A;  1BN5 A;  2B3H A;  3RVA A;  1C24 A;  3PKC A;  3D27 A;  4FO7 A;  4FUK A;  2BHA A;  3FMQ A;  5JHU A;  3MAT A;  1QXZ A;  3TB5 A;  2BWT A;  4IEC A;  2GG3 A;  1B59 A;  1C21 A;  2OAZ A;  2Q95 A;  1O0X A;  3IU7 A;  4QR8 A;  4IPA A;  4FO8 A;  3L24 A;  4S2T P;  5D6E A;  1W7V A;  2BWY A;  2BN7 A;  2Q96 A;  2GU5 A;  4U69 A;  2Q92 A;  2GGB A;  1XNZ A;  3PKE A;  4U70 A;  5FCH A;  4ZNG A;  1CHM A;  2BWS A;  4PV4 A;  3L7G A;  1KP0 A;  5JI6 A;  2EVC A;  5CDE A;  4RZZ A;  4IDY A;  1N51 A;  1R58 A;  2BH3 A;  4U75 A;  1JAW A;  2P9A A;  4U6Z A;  1YW8 A;  2BWX A;  1MAT A;  4U6C A;  3ROR A;  2BB7 A;  2BHB A;  4FLI A;  4RZY A;  2NQ6 A;  1B6A A;  2ZSG A;  1QZY A;  2GG2 A;  1QXW A;  2EVO A;  1XGN A;  4IU6 A;  4U6J A;  2Q8K A;  2HOW A;  2MAT A;  3TAV A;  4U1B A;  4RGZ 1;  1KQ9 A;  3PKA A;  2GG5 A;  2GU6 A;  4HXX A;  5FCF A;  2NQ7 A;  3PKB A;  4ZWP A;  2GU4 A;  2BWV A;  1PV9 A;  2V3Z A;  1C27 A;  4IKS A;  4Z7M A;  2OKN A;  3CB6 A;  2P99 A;  2GGC A;  1XGO A;  1WKM A;  1C23 A;  1YVM A;  4IKR A;  1WLR A;  2B3L A;  3FM3 A;  1XGM A;  2EA2 A;  4S00 A;  3BIT A;  4U71 A;  4JUQ A;  1YJ3 A;  2B3K A;  2EA4 A;  2GTX A;  4FLK A;  4MAT A;  4S2R P;  1R5H A;  4IKU A;  2IW2 A;  2GG8 A;  1R5G A;  4FKC A;  1WL9 A;  5CLS A;  1BOA A;  3S6B A;  5CE6 A;  4U73 A;  3CB5 A;  4S01 A;  1A16 A;  3BIP A;  2BHC A;  2V6C A;  3FMR A; 
#chains in the Genus database with same CATH homology
 3IG4 A;  2GA2 A;  3MR1 A;  5E5B A;  1WY2 A;  2GG9 A;  1WN1 A;  2GZ5 A;  2Q93 A;  3CTZ A;  2G6P A;  4IF7 A;  4ZWU A;  2Q94 A;  4FLL A;  4B28 A;  3IU9 A;  2V3Y A;  4U76 A;  5CIK A;  1Y1N A;  2ADU A;  4A6V A;  1WL6 A;  2V3X A;  2GG7 A;  3MX6 A;  3Q6D A;  3PKD A;  2P98 A;  2GU7 A;  1QXY A;  1W2M A;  5CNX A;  5D6F A;  4A6W A;  1WBQ A;  4PNC A;  1KQ0 A;  2BWW A;  5JFR A;  4U6E A;  4KM3 A;  4R60 A;  3BIQ A;  5CDL A;  3IU8 A;  4IKT A;  4FLJ A;  2EVM A;  2GG0 A;  1C22 A;  2DFI A;  4OOK A;  4ZWO A;  5CDV A;  2BWU A;  1YW7 A;  2BHD A;  4U6W A;  4EGE A;  1YW9 A;  1M35 A;  1XGS A;  1BN5 A;  2B3H A;  3RVA A;  1C24 A;  3PKC A;  3D27 A;  4FO7 A;  4FUK A;  2BHA A;  3FMQ A;  5JHU A;  3MAT A;  1QXZ A;  3TB5 A;  2BWT A;  4IEC A;  2GG3 A;  1B59 A;  1C21 A;  2OAZ A;  2Q95 A;  1O0X A;  3IU7 A;  4QR8 A;  4IPA A;  4FO8 A;  3L24 A;  4S2T P;  5D6E A;  1W7V A;  2BWY A;  2BN7 A;  2Q96 A;  2GU5 A;  4U69 A;  2Q92 A;  2GGB A;  1XNZ A;  3PKE A;  4U70 A;  5FCH A;  4ZNG A;  1CHM A;  2BWS A;  4PV4 A;  3L7G A;  1KP0 A;  5JI6 A;  2EVC A;  5CDE A;  4RZZ A;  4IDY A;  1N51 A;  1R58 A;  2BH3 A;  4U75 A;  1JAW A;  2P9A A;  4U6Z A;  1YW8 A;  2BWX A;  1MAT A;  4U6C A;  3ROR A;  2BB7 A;  2BHB A;  4FLI A;  4RZY A;  2NQ6 A;  1B6A A;  2ZSG A;  1QZY A;  2GG2 A;  1QXW A;  2EVO A;  1XGN A;  4IU6 A;  4U6J A;  2Q8K A;  2HOW A;  2MAT A;  3TAV A;  4U1B A;  4RGZ 1;  1KQ9 A;  3PKA A;  2GG5 A;  2GU6 A;  4HXX A;  5FCF A;  2NQ7 A;  3PKB A;  4ZWP A;  2GU4 A;  2BWV A;  1PV9 A;  2V3Z A;  1C27 A;  4IKS A;  4Z7M A;  2OKN A;  3CB6 A;  2P99 A;  2GGC A;  1XGO A;  1WKM A;  1C23 A;  1YVM A;  4IKR A;  1WLR A;  2B3L A;  3FM3 A;  1XGM A;  2EA2 A;  4S00 A;  3BIT A;  4U71 A;  4JUQ A;  1YJ3 A;  2B3K A;  2EA4 A;  2GTX A;  4FLK A;  4MAT A;  4S2R P;  1R5H A;  4IKU A;  2IW2 A;  2GG8 A;  1R5G A;  4FKC A;  1WL9 A;  5CLS A;  1BOA A;  3S6B A;  5CE6 A;  4U73 A;  3CB5 A;  4S01 A;  1A16 A;  3BIP A;  2BHC A;  2V6C A;  3FMR A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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