2NQ6A

Crystal structure of human methionine aminopeptidase type 1 in complex with 3-tert-butoxycarbonylaminopyridine-2-carboxylic acid thiazole-2-ylamide
Total Genus 98
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
98
sequence length
304
structure length
304
Chain Sequence
b'YRYTGKLRPHYPLMPTRPVPSYIQRPDYADHPLGMSESEQALKGTSQIKLLSSEDIEGMRLVCRLAREVLDVAAGMIKPGVTTEEIDHAVHLACIARNCYPSPLNYYNFPKSCCTSVNEVICHGIPDRRPLQEGDIVNVDITLYRNGYHGDLNETFFVGEVDDGARKLVQTTYECLMQAIDAVKPGVRYRELGNIIQKHAQANGFSVVRSYCGHGIHKLFHTAPNVPHYAKNKAVGVMKSGHVFTIEPMICEGGWQDETWPDGWTAVTRDGKRSAQFEHTLLVTDTGCEILTRRLDSARPHFMS'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Elucidation of the function of type 1 human methionine aminopeptidase during cell cycle progression.
pubmed doi rcsb
molecule keywords Methionine aminopeptidase 1
source organism Homo sapiens
molecule tags Hydrolase
total genus 98
structure length 304
sequence length 304
ec nomenclature ec 3.4.11.18: Methionyl aminopeptidase.
pdb deposition date 2006-10-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00557 Peptidase_M24 Metallopeptidase family M24
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.230.10 Alpha Beta Alpha-Beta Complex Creatine Amidinohydrolase Creatinase/methionine aminopeptidase superfamily 2nq6A00
2BWSA 4U69A 3CB6A 3IU7A 1YW8A 4U70A 2ADUA 2Q95A 3FMRA 4IPAA 4S01A 1QXWA 2NQ6A 2OKNA 4OOKA 2BWTA 3BITA 4S2RP 4U6ZA 4U73A 4S2TP 5CNXA 5FCFA 1KQ9A 3BIPA 1C24A 2BHAA 3FM3A 2Q8KA 1QXZA 1XNZA 1Y1NA 2GU5A 1XGNA 2IW2A 1C22A 2Q94A 4IKTA 4FLLA 4RGZ1 5CDLA 1WN1A 3TAVA 4FO7A 4JUQA 4HXXA 2GG9A 1B6AA 1N51A 1C27A 1XGMA 3MX6A 4ZWPA 2Q96A 2GZ5A 3IG4A 2BWVA 5CE6A 4U6EA 1M35A 2V6CA 4QR8A 1YVMA 4U1BA 1XGOA 2Q93A 4A6VA 4RZZA 5D6EA 4U71A 4IKRA 2GG7A 2DFIA 1YW7A 2EVCA 2EVOA 2B3LA 2P9AA 4IF7A 5CDVA 1R5HA 2NQ7A 5JI6A 4FUKA 4R60A 1MATA 3PKCA 1KQ0A 1C23A 1PV9A 2GU6A 3L24A 2B3KA 1QZYA 3Q6DA 4IECA 4U75A 2BN7A 1WY2A 1B59A 4U6CA 2Q92A 4ZWOA 2GU4A 3L7GA 4FLIA 1WKMA 4U6JA 1YJ3A 1CHMA 3S6BA 2GTXA 2HOWA 4ZNGA 4U6WA 5CLSA 1YW9A 2V3YA 1WL9A 2B3HA 2GG2A 1BN5A 5E5BA 4FLJA 2BHCA 1C21A 1R58A 1W2MA 2EA2A 2OAZA 4A6WA 3BIQA 2GG3A 2GG8A 1W7VA 2MATA 3PKDA 3CTZA 2GG0A 4B28A 4IDYA 1R5GA 3RORA 4ZWUA 5FCHA 2G6PA 5D6FA 5JFRA 2BH3A 3IU8A 1A16A 1WBQA 4KM3A 4Z7MA 5JHUA 1O0XA 3MATA 2GG5A 3RVAA 4EGEA 3PKAA 1WLRA 2BHBA 2BB7A 1WL6A 5CIKA 1BOAA 4IKUA 2BWWA 4FKCA 4S00A 3PKEA 4RZYA 3IU9A 4IU6A 2P99A 3PKBA 2EVMA 3FMQA 4FO8A 1KP0A 2GGCA 2P98A 5CDEA 4PNCA 2GA2A 1XGSA 1QXYA 2EA4A 2BWYA 4MATA 2BHDA 2GGBA 2V3ZA 2V3XA 4FLKA 4IKSA 3MR1A 3CB5A 4PV4A 2ZSGA 1JAWA 2BWXA 3D27A 3TB5A 2BWUA 2GU7A 4U76A
chains in the Genus database with same CATH superfamily
2BWSA 4U69A 3CB6A 3IU7A 1YW8A 4U70A 2ADUA 2Q95A 3FMRA 4IPAA 4S01A 1QXWA 2NQ6A 2OKNA 4OOKA 2BWTA 3BITA 4S2RP 4U6ZA 4U73A 4S2TP 5CNXA 5FCFA 1KQ9A 3BIPA 1C24A 2BHAA 3FM3A 2Q8KA 1QXZA 1XNZA 1Y1NA 2GU5A 1XGNA 2IW2A 1C22A 2Q94A 4IKTA 4FLLA 4RGZ1 5CDLA 1WN1A 3TAVA 4FO7A 4JUQA 4HXXA 2GG9A 1B6AA 1N51A 1C27A 1XGMA 3MX6A 4ZWPA 2Q96A 2GZ5A 3IG4A 2BWVA 5CE6A 4U6EA 1M35A 2V6CA 4QR8A 1YVMA 4U1BA 1XGOA 2Q93A 4A6VA 4RZZA 5D6EA 4U71A 4IKRA 2GG7A 2DFIA 1YW7A 2EVCA 2EVOA 2B3LA 2P9AA 4IF7A 5CDVA 1R5HA 2NQ7A 5JI6A 4FUKA 4R60A 1MATA 3PKCA 1KQ0A 1C23A 1PV9A 2GU6A 3L24A 2B3KA 1QZYA 3Q6DA 4IECA 4U75A 2BN7A 1WY2A 1B59A 4U6CA 2Q92A 4ZWOA 2GU4A 3L7GA 4FLIA 1WKMA 4U6JA 1YJ3A 1CHMA 3S6BA 2GTXA 2HOWA 4ZNGA 4U6WA 5CLSA 1YW9A 2V3YA 1WL9A 2B3HA 2GG2A 1BN5A 5E5BA 4FLJA 2BHCA 1C21A 1R58A 1W2MA 2EA2A 2OAZA 4A6WA 3BIQA 2GG3A 2GG8A 1W7VA 2MATA 3PKDA 3CTZA 2GG0A 4B28A 4IDYA 1R5GA 3RORA 4ZWUA 5FCHA 2G6PA 5D6FA 5JFRA 2BH3A 3IU8A 1A16A 1WBQA 4KM3A 4Z7MA 5JHUA 1O0XA 3MATA 2GG5A 3RVAA 4EGEA 3PKAA 1WLRA 2BHBA 2BB7A 1WL6A 5CIKA 1BOAA 4IKUA 2BWWA 4FKCA 4S00A 3PKEA 4RZYA 3IU9A 4IU6A 2P99A 3PKBA 2EVMA 3FMQA 4FO8A 1KP0A 2GGCA 2P98A 5CDEA 4PNCA 2GA2A 1XGSA 1QXYA 2EA4A 2BWYA 4MATA 2BHDA 2GGBA 2V3ZA 2V3XA 4FLKA 4IKSA 3MR1A 3CB5A 4PV4A 2ZSGA 1JAWA 2BWXA 3D27A 3TB5A 2BWUA 2GU7A 4U76A
chains in the Genus database with same CATH topology
2BWSA 4U69A 3CB6A 3IU7A 1YW8A 4U70A 2ADUA 2Q95A 3FMRA 4IPAA 4S01A 1QXWA 2NQ6A 2OKNA 4OOKA 2BWTA 3BITA 4S2RP 4U6ZA 4U73A 4S2TP 5CNXA 5FCFA 1KQ9A 3BIPA 1C24A 2BHAA 3FM3A 2Q8KA 1QXZA 1XNZA 1Y1NA 2GU5A 1XGNA 2IW2A 1C22A 2Q94A 4IKTA 4FLLA 4RGZ1 5CDLA 1WN1A 3TAVA 4FO7A 4JUQA 4HXXA 2GG9A 1B6AA 1N51A 1C27A 1XGMA 3MX6A 4ZWPA 2Q96A 2GZ5A 3IG4A 2BWVA 5CE6A 4U6EA 1M35A 2V6CA 4QR8A 1YVMA 4U1BA 1XGOA 2Q93A 4A6VA 4RZZA 5D6EA 4U71A 4IKRA 2GG7A 2DFIA 1YW7A 2EVCA 2EVOA 2B3LA 2P9AA 4IF7A 5CDVA 1R5HA 2NQ7A 5JI6A 4FUKA 4R60A 1MATA 3PKCA 1KQ0A 1C23A 1PV9A 2GU6A 3L24A 2B3KA 1QZYA 3Q6DA 4IECA 4U75A 2BN7A 1WY2A 1B59A 4U6CA 2Q92A 4ZWOA 2GU4A 3L7GA 4FLIA 1WKMA 4U6JA 1YJ3A 1CHMA 3S6BA 2GTXA 2HOWA 4ZNGA 4U6WA 5CLSA 1YW9A 2V3YA 1WL9A 2B3HA 2GG2A 1BN5A 5E5BA 4FLJA 2BHCA 1C21A 1R58A 1W2MA 2EA2A 2OAZA 4A6WA 3BIQA 2GG3A 2GG8A 1W7VA 2MATA 3PKDA 3CTZA 2GG0A 4B28A 4IDYA 1R5GA 3RORA 4ZWUA 5FCHA 2G6PA 5D6FA 5JFRA 2BH3A 3IU8A 1A16A 1WBQA 4KM3A 4Z7MA 5JHUA 1O0XA 3MATA 2GG5A 3RVAA 4EGEA 3PKAA 1WLRA 2BHBA 2BB7A 1WL6A 5CIKA 1BOAA 4IKUA 2BWWA 4FKCA 4S00A 3PKEA 4RZYA 3IU9A 4IU6A 2P99A 3PKBA 2EVMA 3FMQA 4FO8A 1KP0A 2GGCA 2P98A 5CDEA 4PNCA 2GA2A 1XGSA 1QXYA 2EA4A 2BWYA 4MATA 2BHDA 2GGBA 2V3ZA 2V3XA 4FLKA 4IKSA 3MR1A 3CB5A 4PV4A 2ZSGA 1JAWA 2BWXA 3D27A 3TB5A 2BWUA 2GU7A 4U76A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2BWS A;  4U69 A;  3CB6 A;  3IU7 A;  1YW8 A;  4U70 A;  2ADU A;  2Q95 A;  3FMR A;  4IPA A;  4S01 A;  1QXW A;  2NQ6 A;  2OKN A;  4OOK A;  2BWT A;  3BIT A;  4S2R P;  4U6Z A;  4U73 A;  4S2T P;  5CNX A;  5FCF A;  1KQ9 A;  3BIP A;  1C24 A;  2BHA A;  3FM3 A;  2Q8K A;  1QXZ A;  1XNZ A;  1Y1N A;  2GU5 A;  1XGN A;  2IW2 A;  1C22 A;  2Q94 A;  4IKT A;  4FLL A;  4RGZ 1;  5CDL A;  1WN1 A;  3TAV A;  4FO7 A;  4JUQ A;  4HXX A;  2GG9 A;  1B6A A;  1N51 A;  1C27 A;  1XGM A;  3MX6 A;  4ZWP A;  2Q96 A;  2GZ5 A;  3IG4 A;  2BWV A;  5CE6 A;  4U6E A;  1M35 A;  2V6C A;  4QR8 A;  1YVM A;  4U1B A;  1XGO A;  2Q93 A;  4A6V A;  4RZZ A;  5D6E A;  4U71 A;  4IKR A;  2GG7 A;  2DFI A;  1YW7 A;  2EVC A;  2EVO A;  2B3L A;  2P9A A;  4IF7 A;  5CDV A;  1R5H A;  2NQ7 A;  5JI6 A;  4FUK A;  4R60 A;  1MAT A;  3PKC A;  1KQ0 A;  1C23 A;  1PV9 A;  2GU6 A;  3L24 A;  2B3K A;  1QZY A;  3Q6D A;  4IEC A;  4U75 A;  2BN7 A;  1WY2 A;  1B59 A;  4U6C A;  2Q92 A;  4ZWO A;  2GU4 A;  3L7G A;  4FLI A;  1WKM A;  4U6J A;  1YJ3 A;  1CHM A;  3S6B A;  2GTX A;  2HOW A;  4ZNG A;  4U6W A;  5CLS A;  1YW9 A;  2V3Y A;  1WL9 A;  2B3H A;  2GG2 A;  1BN5 A;  5E5B A;  4FLJ A;  2BHC A;  1C21 A;  1R58 A;  1W2M A;  2EA2 A;  2OAZ A;  4A6W A;  3BIQ A;  2GG3 A;  2GG8 A;  1W7V A;  2MAT A;  3PKD A;  3CTZ A;  2GG0 A;  4B28 A;  4IDY A;  1R5G A;  3ROR A;  4ZWU A;  5FCH A;  2G6P A;  5D6F A;  5JFR A;  2BH3 A;  3IU8 A;  1A16 A;  1WBQ A;  4KM3 A;  4Z7M A;  5JHU A;  1O0X A;  3MAT A;  2GG5 A;  3RVA A;  4EGE A;  3PKA A;  1WLR A;  2BHB A;  2BB7 A;  1WL6 A;  5CIK A;  1BOA A;  4IKU A;  2BWW A;  4FKC A;  4S00 A;  3PKE A;  4RZY A;  3IU9 A;  4IU6 A;  2P99 A;  3PKB A;  2EVM A;  3FMQ A;  4FO8 A;  1KP0 A;  2GGC A;  2P98 A;  5CDE A;  4PNC A;  2GA2 A;  1XGS A;  1QXY A;  2EA4 A;  2BWY A;  4MAT A;  2BHD A;  2GGB A;  2V3Z A;  2V3X A;  4FLK A;  4IKS A;  3MR1 A;  3CB5 A;  4PV4 A;  2ZSG A;  1JAW A;  2BWX A;  3D27 A;  3TB5 A;  2BWU A;  2GU7 A;  4U76 A; 
#chains in the Genus database with same CATH topology
 2BWS A;  4U69 A;  3CB6 A;  3IU7 A;  1YW8 A;  4U70 A;  2ADU A;  2Q95 A;  3FMR A;  4IPA A;  4S01 A;  1QXW A;  2NQ6 A;  2OKN A;  4OOK A;  2BWT A;  3BIT A;  4S2R P;  4U6Z A;  4U73 A;  4S2T P;  5CNX A;  5FCF A;  1KQ9 A;  3BIP A;  1C24 A;  2BHA A;  3FM3 A;  2Q8K A;  1QXZ A;  1XNZ A;  1Y1N A;  2GU5 A;  1XGN A;  2IW2 A;  1C22 A;  2Q94 A;  4IKT A;  4FLL A;  4RGZ 1;  5CDL A;  1WN1 A;  3TAV A;  4FO7 A;  4JUQ A;  4HXX A;  2GG9 A;  1B6A A;  1N51 A;  1C27 A;  1XGM A;  3MX6 A;  4ZWP A;  2Q96 A;  2GZ5 A;  3IG4 A;  2BWV A;  5CE6 A;  4U6E A;  1M35 A;  2V6C A;  4QR8 A;  1YVM A;  4U1B A;  1XGO A;  2Q93 A;  4A6V A;  4RZZ A;  5D6E A;  4U71 A;  4IKR A;  2GG7 A;  2DFI A;  1YW7 A;  2EVC A;  2EVO A;  2B3L A;  2P9A A;  4IF7 A;  5CDV A;  1R5H A;  2NQ7 A;  5JI6 A;  4FUK A;  4R60 A;  1MAT A;  3PKC A;  1KQ0 A;  1C23 A;  1PV9 A;  2GU6 A;  3L24 A;  2B3K A;  1QZY A;  3Q6D A;  4IEC A;  4U75 A;  2BN7 A;  1WY2 A;  1B59 A;  4U6C A;  2Q92 A;  4ZWO A;  2GU4 A;  3L7G A;  4FLI A;  1WKM A;  4U6J A;  1YJ3 A;  1CHM A;  3S6B A;  2GTX A;  2HOW A;  4ZNG A;  4U6W A;  5CLS A;  1YW9 A;  2V3Y A;  1WL9 A;  2B3H A;  2GG2 A;  1BN5 A;  5E5B A;  4FLJ A;  2BHC A;  1C21 A;  1R58 A;  1W2M A;  2EA2 A;  2OAZ A;  4A6W A;  3BIQ A;  2GG3 A;  2GG8 A;  1W7V A;  2MAT A;  3PKD A;  3CTZ A;  2GG0 A;  4B28 A;  4IDY A;  1R5G A;  3ROR A;  4ZWU A;  5FCH A;  2G6P A;  5D6F A;  5JFR A;  2BH3 A;  3IU8 A;  1A16 A;  1WBQ A;  4KM3 A;  4Z7M A;  5JHU A;  1O0X A;  3MAT A;  2GG5 A;  3RVA A;  4EGE A;  3PKA A;  1WLR A;  2BHB A;  2BB7 A;  1WL6 A;  5CIK A;  1BOA A;  4IKU A;  2BWW A;  4FKC A;  4S00 A;  3PKE A;  4RZY A;  3IU9 A;  4IU6 A;  2P99 A;  3PKB A;  2EVM A;  3FMQ A;  4FO8 A;  1KP0 A;  2GGC A;  2P98 A;  5CDE A;  4PNC A;  2GA2 A;  1XGS A;  1QXY A;  2EA4 A;  2BWY A;  4MAT A;  2BHD A;  2GGB A;  2V3Z A;  2V3X A;  4FLK A;  4IKS A;  3MR1 A;  3CB5 A;  4PV4 A;  2ZSG A;  1JAW A;  2BWX A;  3D27 A;  3TB5 A;  2BWU A;  2GU7 A;  4U76 A; 
#chains in the Genus database with same CATH homology
 2BWS A;  4U69 A;  3CB6 A;  3IU7 A;  1YW8 A;  4U70 A;  2ADU A;  2Q95 A;  3FMR A;  4IPA A;  4S01 A;  1QXW A;  2NQ6 A;  2OKN A;  4OOK A;  2BWT A;  3BIT A;  4S2R P;  4U6Z A;  4U73 A;  4S2T P;  5CNX A;  5FCF A;  1KQ9 A;  3BIP A;  1C24 A;  2BHA A;  3FM3 A;  2Q8K A;  1QXZ A;  1XNZ A;  1Y1N A;  2GU5 A;  1XGN A;  2IW2 A;  1C22 A;  2Q94 A;  4IKT A;  4FLL A;  4RGZ 1;  5CDL A;  1WN1 A;  3TAV A;  4FO7 A;  4JUQ A;  4HXX A;  2GG9 A;  1B6A A;  1N51 A;  1C27 A;  1XGM A;  3MX6 A;  4ZWP A;  2Q96 A;  2GZ5 A;  3IG4 A;  2BWV A;  5CE6 A;  4U6E A;  1M35 A;  2V6C A;  4QR8 A;  1YVM A;  4U1B A;  1XGO A;  2Q93 A;  4A6V A;  4RZZ A;  5D6E A;  4U71 A;  4IKR A;  2GG7 A;  2DFI A;  1YW7 A;  2EVC A;  2EVO A;  2B3L A;  2P9A A;  4IF7 A;  5CDV A;  1R5H A;  2NQ7 A;  5JI6 A;  4FUK A;  4R60 A;  1MAT A;  3PKC A;  1KQ0 A;  1C23 A;  1PV9 A;  2GU6 A;  3L24 A;  2B3K A;  1QZY A;  3Q6D A;  4IEC A;  4U75 A;  2BN7 A;  1WY2 A;  1B59 A;  4U6C A;  2Q92 A;  4ZWO A;  2GU4 A;  3L7G A;  4FLI A;  1WKM A;  4U6J A;  1YJ3 A;  1CHM A;  3S6B A;  2GTX A;  2HOW A;  4ZNG A;  4U6W A;  5CLS A;  1YW9 A;  2V3Y A;  1WL9 A;  2B3H A;  2GG2 A;  1BN5 A;  5E5B A;  4FLJ A;  2BHC A;  1C21 A;  1R58 A;  1W2M A;  2EA2 A;  2OAZ A;  4A6W A;  3BIQ A;  2GG3 A;  2GG8 A;  1W7V A;  2MAT A;  3PKD A;  3CTZ A;  2GG0 A;  4B28 A;  4IDY A;  1R5G A;  3ROR A;  4ZWU A;  5FCH A;  2G6P A;  5D6F A;  5JFR A;  2BH3 A;  3IU8 A;  1A16 A;  1WBQ A;  4KM3 A;  4Z7M A;  5JHU A;  1O0X A;  3MAT A;  2GG5 A;  3RVA A;  4EGE A;  3PKA A;  1WLR A;  2BHB A;  2BB7 A;  1WL6 A;  5CIK A;  1BOA A;  4IKU A;  2BWW A;  4FKC A;  4S00 A;  3PKE A;  4RZY A;  3IU9 A;  4IU6 A;  2P99 A;  3PKB A;  2EVM A;  3FMQ A;  4FO8 A;  1KP0 A;  2GGC A;  2P98 A;  5CDE A;  4PNC A;  2GA2 A;  1XGS A;  1QXY A;  2EA4 A;  2BWY A;  4MAT A;  2BHD A;  2GGB A;  2V3Z A;  2V3X A;  4FLK A;  4IKS A;  3MR1 A;  3CB5 A;  4PV4 A;  2ZSG A;  1JAW A;  2BWX A;  3D27 A;  3TB5 A;  2BWU A;  2GU7 A;  4U76 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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