2NQ6A

Crystal structure of human methionine aminopeptidase type 1 in complex with 3-tert-butoxycarbonylaminopyridine-2-carboxylic acid thiazole-2-ylamide
Total Genus 98
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
98
sequence length
304
structure length
304
Chain Sequence
YRYTGKLRPHYPLMPTRPVPSYIQRPDYADHPLGMSESEQALKGTSQIKLLSSEDIEGMRLVCRLAREVLDVAAGMIKPGVTTEEIDHAVHLACIARNCYPSPLNYYNFPKSCCTSVNEVICHGIPDRRPLQEGDIVNVDITLYRNGYHGDLNETFFVGEVDDGARKLVQTTYECLMQAIDAVKPGVRYRELGNIIQKHAQANGFSVVRSYCGHGIHKLFHTAPNVPHYAKNKAVGVMKSGHVFTIEPMICEGGWQDETWPDGWTAVTRDGKRSAQFEHTLLVTDTGCEILTRRLDSARPHFMS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
source organism Homo sapiens
publication title Elucidation of the function of type 1 human methionine aminopeptidase during cell cycle progression.
pubmed doi rcsb
molecule keywords Methionine aminopeptidase 1
total genus 98
structure length 304
sequence length 304
ec nomenclature ec 3.4.11.18: Methionyl aminopeptidase.
pdb deposition date 2006-10-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00557 Peptidase_M24 Metallopeptidase family M24
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.230.10 Alpha Beta Alpha-Beta Complex Creatine Amidinohydrolase Creatinase/methionine aminopeptidase superfamily 2nq6A00
2BHDA 2BWXA 3S6BA 1XGSA 4ZWOA 5FCHA 5JFRA 3CB6A 1MATA 3D27A 3FMQA 1Y1NA 1QXWA 4IPAA 2BN7A 4ZWUA 1YW8A 4ZWPA 3IU8A 2BWYA 4IKSA 4U6CA 1YW7A 4U75A 2IW2A 2BWUA 4U6WA 3Q6DA 1B6AA 2GG8A 2EA2A 2BB7A 2OKNA 4FO8A 2EVMA 4U71A 4U70A 4FUKA 2BWTA 3L24A 4FLKA 2NQ6A 1KP0A 1WKMA 2BWVA 2P98A 1A16A 4IKUA 4QR8A 1JAWA 1R58A 4U76A 1O0XA 2Q94A 5JI6A 4S00A 1YVMA 1QXYA 2GG3A 2P99A 4OOKA 5D6FA 2GU7A 1KQ9A 2ADUA 3TAVA 1WLRA 1KQ0A 4S2RP 3BIPA 4ZNGA 1M35A 2BWSA 3FM3A 2GU4A 4PV4A 1XGMA 4IECA 4IU6A 2B3KA 4RZZA 2GG0A 5E5BA 2V3XA 1R5HA 5JHUA 4FLIA 2EA4A 4RZYA 2NQ7A 4S2TP 3PKEA 1C21A 3PKDA 3CTZA 4HXXA 5CNXA 2P9AA 1C22A 5CDLA 4U6JA 1WL9A 4U6EA 4U6ZA 5D6EA 3PKBA 4A6WA 2Q92A 1XNZA 4MATA 2B3HA 2B3LA 5FCFA 3MX6A 4EGEA 3CB5A 4IKTA 3TB5A 1C27A 2Q96A 3PKAA 2HOWA 1YW9A 2BHCA 1BN5A 1QXZA 1XGOA 4IKRA 4RGZ1 4U73A 1R5GA 4S01A 1N51A 1CHMA 3IU7A 2BWWA 4Z7MA 2BHAA 1C24A 2GG7A 2BHBA 4FLJA 1WY2A 3IU9A 2EVOA 1B59A 2V6CA 1WN1A 2Q95A 3MATA 3BITA 3PKCA 3RORA 1PV9A 2MATA 4FLLA 2Q8KA 2DFIA 5CIKA 2GG9A 2GGCA 4A6VA 2EVCA 3IG4A 2ZSGA 4R60A 2V3ZA 3BIQA 3FMRA 5CLSA 4FO7A 2GG2A 1C23A 3MR1A 2BH3A 2V3YA 2GU6A 3L7GA 4B28A 1W2MA 5CE6A 4PNCA 4KM3A 2GG5A 4U1BA 2GZ5A 2G6PA 2GA2A 2GTXA 4JUQA 1BOAA 1WL6A 2GGBA 2GU5A 4IDYA 5CDEA 2OAZA 4IF7A 4FKCA 1WBQA 1YJ3A 2Q93A 3RVAA 5CDVA 1QZYA 4U69A 1XGNA 1W7VA
chains in the Genus database with same CATH superfamily
2BHDA 2BWXA 3S6BA 1XGSA 4ZWOA 5FCHA 5JFRA 3CB6A 1MATA 3D27A 3FMQA 1Y1NA 1QXWA 4IPAA 2BN7A 4ZWUA 1YW8A 4ZWPA 3IU8A 2BWYA 4IKSA 4U6CA 1YW7A 4U75A 2IW2A 2BWUA 4U6WA 3Q6DA 1B6AA 2GG8A 2EA2A 2BB7A 2OKNA 4FO8A 2EVMA 4U71A 4U70A 4FUKA 2BWTA 3L24A 4FLKA 2NQ6A 1KP0A 1WKMA 2BWVA 2P98A 1A16A 4IKUA 4QR8A 1JAWA 1R58A 4U76A 1O0XA 2Q94A 5JI6A 4S00A 1YVMA 1QXYA 2GG3A 2P99A 4OOKA 5D6FA 2GU7A 1KQ9A 2ADUA 3TAVA 1WLRA 1KQ0A 4S2RP 3BIPA 4ZNGA 1M35A 2BWSA 3FM3A 2GU4A 4PV4A 1XGMA 4IECA 4IU6A 2B3KA 4RZZA 2GG0A 5E5BA 2V3XA 1R5HA 5JHUA 4FLIA 2EA4A 4RZYA 2NQ7A 4S2TP 3PKEA 1C21A 3PKDA 3CTZA 4HXXA 5CNXA 2P9AA 1C22A 5CDLA 4U6JA 1WL9A 4U6EA 4U6ZA 5D6EA 3PKBA 4A6WA 2Q92A 1XNZA 4MATA 2B3HA 2B3LA 5FCFA 3MX6A 4EGEA 3CB5A 4IKTA 3TB5A 1C27A 2Q96A 3PKAA 2HOWA 1YW9A 2BHCA 1BN5A 1QXZA 1XGOA 4IKRA 4RGZ1 4U73A 1R5GA 4S01A 1N51A 1CHMA 3IU7A 2BWWA 4Z7MA 2BHAA 1C24A 2GG7A 2BHBA 4FLJA 1WY2A 3IU9A 2EVOA 1B59A 2V6CA 1WN1A 2Q95A 3MATA 3BITA 3PKCA 3RORA 1PV9A 2MATA 4FLLA 2Q8KA 2DFIA 5CIKA 2GG9A 2GGCA 4A6VA 2EVCA 3IG4A 2ZSGA 4R60A 2V3ZA 3BIQA 3FMRA 5CLSA 4FO7A 2GG2A 1C23A 3MR1A 2BH3A 2V3YA 2GU6A 3L7GA 4B28A 1W2MA 5CE6A 4PNCA 4KM3A 2GG5A 4U1BA 2GZ5A 2G6PA 2GA2A 2GTXA 4JUQA 1BOAA 1WL6A 2GGBA 2GU5A 4IDYA 5CDEA 2OAZA 4IF7A 4FKCA 1WBQA 1YJ3A 2Q93A 3RVAA 5CDVA 1QZYA 4U69A 1XGNA 1W7VA
chains in the Genus database with same CATH topology
2BHDA 2BWXA 3S6BA 1XGSA 4ZWOA 5FCHA 5JFRA 3CB6A 1MATA 3D27A 3FMQA 1Y1NA 1QXWA 4IPAA 2BN7A 4ZWUA 1YW8A 4ZWPA 3IU8A 2BWYA 4IKSA 4U6CA 1YW7A 4U75A 2IW2A 2BWUA 4U6WA 3Q6DA 1B6AA 2GG8A 2EA2A 2BB7A 2OKNA 4FO8A 2EVMA 4U71A 4U70A 4FUKA 2BWTA 3L24A 4FLKA 2NQ6A 1KP0A 1WKMA 2BWVA 2P98A 1A16A 4IKUA 4QR8A 1JAWA 1R58A 4U76A 1O0XA 2Q94A 5JI6A 4S00A 1YVMA 1QXYA 2GG3A 2P99A 4OOKA 5D6FA 2GU7A 1KQ9A 2ADUA 3TAVA 1WLRA 1KQ0A 4S2RP 3BIPA 4ZNGA 1M35A 2BWSA 3FM3A 2GU4A 4PV4A 1XGMA 4IECA 4IU6A 2B3KA 4RZZA 2GG0A 5E5BA 2V3XA 1R5HA 5JHUA 4FLIA 2EA4A 4RZYA 2NQ7A 4S2TP 3PKEA 1C21A 3PKDA 3CTZA 4HXXA 5CNXA 2P9AA 1C22A 5CDLA 4U6JA 1WL9A 4U6EA 4U6ZA 5D6EA 3PKBA 4A6WA 2Q92A 1XNZA 4MATA 2B3HA 2B3LA 5FCFA 3MX6A 4EGEA 3CB5A 4IKTA 3TB5A 1C27A 2Q96A 3PKAA 2HOWA 1YW9A 2BHCA 1BN5A 1QXZA 1XGOA 4IKRA 4RGZ1 4U73A 1R5GA 4S01A 1N51A 1CHMA 3IU7A 2BWWA 4Z7MA 2BHAA 1C24A 2GG7A 2BHBA 4FLJA 1WY2A 3IU9A 2EVOA 1B59A 2V6CA 1WN1A 2Q95A 3MATA 3BITA 3PKCA 3RORA 1PV9A 2MATA 4FLLA 2Q8KA 2DFIA 5CIKA 2GG9A 2GGCA 4A6VA 2EVCA 3IG4A 2ZSGA 4R60A 2V3ZA 3BIQA 3FMRA 5CLSA 4FO7A 2GG2A 1C23A 3MR1A 2BH3A 2V3YA 2GU6A 3L7GA 4B28A 1W2MA 5CE6A 4PNCA 4KM3A 2GG5A 4U1BA 2GZ5A 2G6PA 2GA2A 2GTXA 4JUQA 1BOAA 1WL6A 2GGBA 2GU5A 4IDYA 5CDEA 2OAZA 4IF7A 4FKCA 1WBQA 1YJ3A 2Q93A 3RVAA 5CDVA 1QZYA 4U69A 1XGNA 1W7VA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2BHD A;  2BWX A;  3S6B A;  1XGS A;  4ZWO A;  5FCH A;  5JFR A;  3CB6 A;  1MAT A;  3D27 A;  3FMQ A;  1Y1N A;  1QXW A;  4IPA A;  2BN7 A;  4ZWU A;  1YW8 A;  4ZWP A;  3IU8 A;  2BWY A;  4IKS A;  4U6C A;  1YW7 A;  4U75 A;  2IW2 A;  2BWU A;  4U6W A;  3Q6D A;  1B6A A;  2GG8 A;  2EA2 A;  2BB7 A;  2OKN A;  4FO8 A;  2EVM A;  4U71 A;  4U70 A;  4FUK A;  2BWT A;  3L24 A;  4FLK A;  2NQ6 A;  1KP0 A;  1WKM A;  2BWV A;  2P98 A;  1A16 A;  4IKU A;  4QR8 A;  1JAW A;  1R58 A;  4U76 A;  1O0X A;  2Q94 A;  5JI6 A;  4S00 A;  1YVM A;  1QXY A;  2GG3 A;  2P99 A;  4OOK A;  5D6F A;  2GU7 A;  1KQ9 A;  2ADU A;  3TAV A;  1WLR A;  1KQ0 A;  4S2R P;  3BIP A;  4ZNG A;  1M35 A;  2BWS A;  3FM3 A;  2GU4 A;  4PV4 A;  1XGM A;  4IEC A;  4IU6 A;  2B3K A;  4RZZ A;  2GG0 A;  5E5B A;  2V3X A;  1R5H A;  5JHU A;  4FLI A;  2EA4 A;  4RZY A;  2NQ7 A;  4S2T P;  3PKE A;  1C21 A;  3PKD A;  3CTZ A;  4HXX A;  5CNX A;  2P9A A;  1C22 A;  5CDL A;  4U6J A;  1WL9 A;  4U6E A;  4U6Z A;  5D6E A;  3PKB A;  4A6W A;  2Q92 A;  1XNZ A;  4MAT A;  2B3H A;  2B3L A;  5FCF A;  3MX6 A;  4EGE A;  3CB5 A;  4IKT A;  3TB5 A;  1C27 A;  2Q96 A;  3PKA A;  2HOW A;  1YW9 A;  2BHC A;  1BN5 A;  1QXZ A;  1XGO A;  4IKR A;  4RGZ 1;  4U73 A;  1R5G A;  4S01 A;  1N51 A;  1CHM A;  3IU7 A;  2BWW A;  4Z7M A;  2BHA A;  1C24 A;  2GG7 A;  2BHB A;  4FLJ A;  1WY2 A;  3IU9 A;  2EVO A;  1B59 A;  2V6C A;  1WN1 A;  2Q95 A;  3MAT A;  3BIT A;  3PKC A;  3ROR A;  1PV9 A;  2MAT A;  4FLL A;  2Q8K A;  2DFI A;  5CIK A;  2GG9 A;  2GGC A;  4A6V A;  2EVC A;  3IG4 A;  2ZSG A;  4R60 A;  2V3Z A;  3BIQ A;  3FMR A;  5CLS A;  4FO7 A;  2GG2 A;  1C23 A;  3MR1 A;  2BH3 A;  2V3Y A;  2GU6 A;  3L7G A;  4B28 A;  1W2M A;  5CE6 A;  4PNC A;  4KM3 A;  2GG5 A;  4U1B A;  2GZ5 A;  2G6P A;  2GA2 A;  2GTX A;  4JUQ A;  1BOA A;  1WL6 A;  2GGB A;  2GU5 A;  4IDY A;  5CDE A;  2OAZ A;  4IF7 A;  4FKC A;  1WBQ A;  1YJ3 A;  2Q93 A;  3RVA A;  5CDV A;  1QZY A;  4U69 A;  1XGN A;  1W7V A; 
#chains in the Genus database with same CATH topology
 2BHD A;  2BWX A;  3S6B A;  1XGS A;  4ZWO A;  5FCH A;  5JFR A;  3CB6 A;  1MAT A;  3D27 A;  3FMQ A;  1Y1N A;  1QXW A;  4IPA A;  2BN7 A;  4ZWU A;  1YW8 A;  4ZWP A;  3IU8 A;  2BWY A;  4IKS A;  4U6C A;  1YW7 A;  4U75 A;  2IW2 A;  2BWU A;  4U6W A;  3Q6D A;  1B6A A;  2GG8 A;  2EA2 A;  2BB7 A;  2OKN A;  4FO8 A;  2EVM A;  4U71 A;  4U70 A;  4FUK A;  2BWT A;  3L24 A;  4FLK A;  2NQ6 A;  1KP0 A;  1WKM A;  2BWV A;  2P98 A;  1A16 A;  4IKU A;  4QR8 A;  1JAW A;  1R58 A;  4U76 A;  1O0X A;  2Q94 A;  5JI6 A;  4S00 A;  1YVM A;  1QXY A;  2GG3 A;  2P99 A;  4OOK A;  5D6F A;  2GU7 A;  1KQ9 A;  2ADU A;  3TAV A;  1WLR A;  1KQ0 A;  4S2R P;  3BIP A;  4ZNG A;  1M35 A;  2BWS A;  3FM3 A;  2GU4 A;  4PV4 A;  1XGM A;  4IEC A;  4IU6 A;  2B3K A;  4RZZ A;  2GG0 A;  5E5B A;  2V3X A;  1R5H A;  5JHU A;  4FLI A;  2EA4 A;  4RZY A;  2NQ7 A;  4S2T P;  3PKE A;  1C21 A;  3PKD A;  3CTZ A;  4HXX A;  5CNX A;  2P9A A;  1C22 A;  5CDL A;  4U6J A;  1WL9 A;  4U6E A;  4U6Z A;  5D6E A;  3PKB A;  4A6W A;  2Q92 A;  1XNZ A;  4MAT A;  2B3H A;  2B3L A;  5FCF A;  3MX6 A;  4EGE A;  3CB5 A;  4IKT A;  3TB5 A;  1C27 A;  2Q96 A;  3PKA A;  2HOW A;  1YW9 A;  2BHC A;  1BN5 A;  1QXZ A;  1XGO A;  4IKR A;  4RGZ 1;  4U73 A;  1R5G A;  4S01 A;  1N51 A;  1CHM A;  3IU7 A;  2BWW A;  4Z7M A;  2BHA A;  1C24 A;  2GG7 A;  2BHB A;  4FLJ A;  1WY2 A;  3IU9 A;  2EVO A;  1B59 A;  2V6C A;  1WN1 A;  2Q95 A;  3MAT A;  3BIT A;  3PKC A;  3ROR A;  1PV9 A;  2MAT A;  4FLL A;  2Q8K A;  2DFI A;  5CIK A;  2GG9 A;  2GGC A;  4A6V A;  2EVC A;  3IG4 A;  2ZSG A;  4R60 A;  2V3Z A;  3BIQ A;  3FMR A;  5CLS A;  4FO7 A;  2GG2 A;  1C23 A;  3MR1 A;  2BH3 A;  2V3Y A;  2GU6 A;  3L7G A;  4B28 A;  1W2M A;  5CE6 A;  4PNC A;  4KM3 A;  2GG5 A;  4U1B A;  2GZ5 A;  2G6P A;  2GA2 A;  2GTX A;  4JUQ A;  1BOA A;  1WL6 A;  2GGB A;  2GU5 A;  4IDY A;  5CDE A;  2OAZ A;  4IF7 A;  4FKC A;  1WBQ A;  1YJ3 A;  2Q93 A;  3RVA A;  5CDV A;  1QZY A;  4U69 A;  1XGN A;  1W7V A; 
#chains in the Genus database with same CATH homology
 2BHD A;  2BWX A;  3S6B A;  1XGS A;  4ZWO A;  5FCH A;  5JFR A;  3CB6 A;  1MAT A;  3D27 A;  3FMQ A;  1Y1N A;  1QXW A;  4IPA A;  2BN7 A;  4ZWU A;  1YW8 A;  4ZWP A;  3IU8 A;  2BWY A;  4IKS A;  4U6C A;  1YW7 A;  4U75 A;  2IW2 A;  2BWU A;  4U6W A;  3Q6D A;  1B6A A;  2GG8 A;  2EA2 A;  2BB7 A;  2OKN A;  4FO8 A;  2EVM A;  4U71 A;  4U70 A;  4FUK A;  2BWT A;  3L24 A;  4FLK A;  2NQ6 A;  1KP0 A;  1WKM A;  2BWV A;  2P98 A;  1A16 A;  4IKU A;  4QR8 A;  1JAW A;  1R58 A;  4U76 A;  1O0X A;  2Q94 A;  5JI6 A;  4S00 A;  1YVM A;  1QXY A;  2GG3 A;  2P99 A;  4OOK A;  5D6F A;  2GU7 A;  1KQ9 A;  2ADU A;  3TAV A;  1WLR A;  1KQ0 A;  4S2R P;  3BIP A;  4ZNG A;  1M35 A;  2BWS A;  3FM3 A;  2GU4 A;  4PV4 A;  1XGM A;  4IEC A;  4IU6 A;  2B3K A;  4RZZ A;  2GG0 A;  5E5B A;  2V3X A;  1R5H A;  5JHU A;  4FLI A;  2EA4 A;  4RZY A;  2NQ7 A;  4S2T P;  3PKE A;  1C21 A;  3PKD A;  3CTZ A;  4HXX A;  5CNX A;  2P9A A;  1C22 A;  5CDL A;  4U6J A;  1WL9 A;  4U6E A;  4U6Z A;  5D6E A;  3PKB A;  4A6W A;  2Q92 A;  1XNZ A;  4MAT A;  2B3H A;  2B3L A;  5FCF A;  3MX6 A;  4EGE A;  3CB5 A;  4IKT A;  3TB5 A;  1C27 A;  2Q96 A;  3PKA A;  2HOW A;  1YW9 A;  2BHC A;  1BN5 A;  1QXZ A;  1XGO A;  4IKR A;  4RGZ 1;  4U73 A;  1R5G A;  4S01 A;  1N51 A;  1CHM A;  3IU7 A;  2BWW A;  4Z7M A;  2BHA A;  1C24 A;  2GG7 A;  2BHB A;  4FLJ A;  1WY2 A;  3IU9 A;  2EVO A;  1B59 A;  2V6C A;  1WN1 A;  2Q95 A;  3MAT A;  3BIT A;  3PKC A;  3ROR A;  1PV9 A;  2MAT A;  4FLL A;  2Q8K A;  2DFI A;  5CIK A;  2GG9 A;  2GGC A;  4A6V A;  2EVC A;  3IG4 A;  2ZSG A;  4R60 A;  2V3Z A;  3BIQ A;  3FMR A;  5CLS A;  4FO7 A;  2GG2 A;  1C23 A;  3MR1 A;  2BH3 A;  2V3Y A;  2GU6 A;  3L7G A;  4B28 A;  1W2M A;  5CE6 A;  4PNC A;  4KM3 A;  2GG5 A;  4U1B A;  2GZ5 A;  2G6P A;  2GA2 A;  2GTX A;  4JUQ A;  1BOA A;  1WL6 A;  2GGB A;  2GU5 A;  4IDY A;  5CDE A;  2OAZ A;  4IF7 A;  4FKC A;  1WBQ A;  1YJ3 A;  2Q93 A;  3RVA A;  5CDV A;  1QZY A;  4U69 A;  1XGN A;  1W7V A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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