2GU5A

E. coli methionine aminopeptidase in complex with nlep, 1: 1, di-metalated
Total Genus 88

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
88
sequence length
261
structure length
261
Chain Sequence
SIKTPEDIEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGYHGYPKSVCISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTIMGERLCRITQESLYLALRMVKPGINLREIGAAIQKFVEAEGFSVVREYCGHGIGRGFHEEPQVLHYDSRETNVVLKPGMTFTIEPMVNAGKKEIRTMKDGWTVKTKDRSLSAQYEHTIVVTDNGCEILTLRKDDTIPAIISHDE

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYS10 (170-172)S12 (194-195)AH1 (8-28)S6 (92-102)TIV6 (241-244)AH2 (38-52)TI7 (247-250)3H1 (29-31)TII1 (33-36)O1 (31-33)TI2 (83-86)S1 (36-37)S2 (56-57)TI1 (57-60)TII2 (59-62)3H2 (62-64)S4 (76-78)S3 (69-73)TI6 (225-228)TIV5 (219-222)TII3 (89-92)TIV1 (101-104)S7 (105-115)TIV2 (115-118)AH3 (120-139)AH4 (146-160)S20 (259-261)TII4 (141-144)S8 (144-145)S14 (206-208)S9 (163-164)TI3 (165-168)S11 (179-183)S13 (199-203)TVIII2 (176-179)TII5 (196-199)TIV3 (173-176)S18 (236-241)S16 (223-225)TIV4 (208-211)S17 (231-233)S19 (244-247)TI8 (251-254)TVIII3 (257-260)TI5 (217-220)TII'1 (73-76)S5 (87-88)TI4 (188-191)S15 (214-216)Updating...
connected with : NaN
molecule tags Hydrolase
source organism Escherichia coli
publication title Structural basis of catalysis by monometalated methionine aminopeptidase.
pubmed doi rcsb
molecule keywords Methionine aminopeptidase
total genus 88
structure length 261
sequence length 261
chains with identical sequence B
ec nomenclature ec 3.4.11.18: Methionyl aminopeptidase.
pdb deposition date 2006-04-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00557 Peptidase_M24 Metallopeptidase family M24
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.230.10 Alpha Beta Alpha-Beta Complex Creatine Amidinohydrolase Creatinase/methionine aminopeptidase superfamily 2gu5A00
4IECA 2GGBA 1MATA 1W2MA 2EA2A 4U75A 1QZYA 1KQ9A 1R5HA 1A16A 5D6EA 1QXWA 2GA2A 2Q96A 4IKSA 2Q8KA 1JAWA 4HXXA 2ZSGA 2BWYA 2HOWA 2B3KA 2NQ7A 2BWWA 3PKDA 3L24A 4QR8A 1YJ3A 1WN1A 3PKEA 1WL9A 4EGEA 2Q93A 5CDVA 4JUQA 3IU9A 2EVMA 1YW8A 2GTXA 1YW9A 2GG2A 2OAZA 3PKAA 4FLKA 5JFRA 2B3HA 2BWSA 2GG9A 3CTZA 4FLIA 5JHUA 4IDYA 4U69A 3IG4A 4U6CA 2GG8A 1KQ0A 3IU8A 2P99A 4ZWUA 4S01A 1XGSA 2NQ6A 4IPAA 2BHCA 3FM3A 4IF7A 1KP0A 2OKNA 3BIQA 3RORA 1R58A 2MATA 1WBQA 3CB5A 3IU7A 3D27A 4U6JA 1XGMA 5FCFA 1BOAA 4ZWOA 2Q94A 2G6PA 5CDLA 4S2RP 4S00A 4OOKA 4U76A 1C24A 3RVAA 3CB6A 4PV4A 1XNZA 1B59A 2GG7A 1C27A 3FMRA 2Q95A 4S2TP 2GZ5A 4FO7A 3S6BA 2EA4A 1M35A 4R60A 4IKTA 2V3YA 4RGZ1 2P98A 4FUKA 5CIKA 1XGNA 5E5BA 2BHBA 4FKCA 2DFIA 2BWVA 4RZYA 4FLJA 1C22A 3PKCA 2GU6A 1WY2A 2V3XA 1N51A 4U73A 4ZWPA 1W7VA 4U6WA 1WKMA 2V3ZA 2V6CA 2GGCA 2IW2A 4RZZA 3Q6DA 2EVOA 4U70A 4A6WA 2BB7A 1CHMA 4A6VA 1BN5A 2ADUA 3TAVA 3FMQA 4IKUA 2BHAA 2BWUA 4U6EA 3BIPA 1YW7A 2BH3A 2GU5A 1Y1NA 1B6AA 3MATA 4IU6A 5CDEA 5CE6A 4FO8A 1R5GA 1QXYA 1WLRA 1XGOA 1C21A 2P9AA 1PV9A 4U6ZA 4U1BA 2BWXA 2GG3A 4ZNGA 4U71A 1WL6A 1O0XA 1C23A 2GG5A 3BITA 3L7GA 5FCHA 2GU4A 4FLLA 2GU7A 2BN7A 2Q92A 1YVMA 2EVCA 4MATA 3MR1A 3TB5A 4IKRA 5CNXA 4Z7MA 5JI6A 2BWTA 2B3LA 5D6FA 3PKBA 2GG0A 4B28A 1QXZA 2BHDA 5CLSA 4PNCA 3MX6A 4KM3A
chains in the Genus database with same CATH superfamily
4IECA 2GGBA 1MATA 1W2MA 2EA2A 4U75A 1QZYA 1KQ9A 1R5HA 1A16A 5D6EA 1QXWA 2GA2A 2Q96A 4IKSA 2Q8KA 1JAWA 4HXXA 2ZSGA 2BWYA 2HOWA 2B3KA 2NQ7A 2BWWA 3PKDA 3L24A 4QR8A 1YJ3A 1WN1A 3PKEA 1WL9A 4EGEA 2Q93A 5CDVA 4JUQA 3IU9A 2EVMA 1YW8A 2GTXA 1YW9A 2GG2A 2OAZA 3PKAA 4FLKA 5JFRA 2B3HA 2BWSA 2GG9A 3CTZA 4FLIA 5JHUA 4IDYA 4U69A 3IG4A 4U6CA 2GG8A 1KQ0A 3IU8A 2P99A 4ZWUA 4S01A 1XGSA 2NQ6A 4IPAA 2BHCA 3FM3A 4IF7A 1KP0A 2OKNA 3BIQA 3RORA 1R58A 2MATA 1WBQA 3CB5A 3IU7A 3D27A 4U6JA 1XGMA 5FCFA 1BOAA 4ZWOA 2Q94A 2G6PA 5CDLA 4S2RP 4S00A 4OOKA 4U76A 1C24A 3RVAA 3CB6A 4PV4A 1XNZA 1B59A 2GG7A 1C27A 3FMRA 2Q95A 4S2TP 2GZ5A 4FO7A 3S6BA 2EA4A 1M35A 4R60A 4IKTA 2V3YA 4RGZ1 2P98A 4FUKA 5CIKA 1XGNA 5E5BA 2BHBA 4FKCA 2DFIA 2BWVA 4RZYA 4FLJA 1C22A 3PKCA 2GU6A 1WY2A 2V3XA 1N51A 4U73A 4ZWPA 1W7VA 4U6WA 1WKMA 2V3ZA 2V6CA 2GGCA 2IW2A 4RZZA 3Q6DA 2EVOA 4U70A 4A6WA 2BB7A 1CHMA 4A6VA 1BN5A 2ADUA 3TAVA 3FMQA 4IKUA 2BHAA 2BWUA 4U6EA 3BIPA 1YW7A 2BH3A 2GU5A 1Y1NA 1B6AA 3MATA 4IU6A 5CDEA 5CE6A 4FO8A 1R5GA 1QXYA 1WLRA 1XGOA 1C21A 2P9AA 1PV9A 4U6ZA 4U1BA 2BWXA 2GG3A 4ZNGA 4U71A 1WL6A 1O0XA 1C23A 2GG5A 3BITA 3L7GA 5FCHA 2GU4A 4FLLA 2GU7A 2BN7A 2Q92A 1YVMA 2EVCA 4MATA 3MR1A 3TB5A 4IKRA 5CNXA 4Z7MA 5JI6A 2BWTA 2B3LA 5D6FA 3PKBA 2GG0A 4B28A 1QXZA 2BHDA 5CLSA 4PNCA 3MX6A 4KM3A
chains in the Genus database with same CATH topology
4IECA 2GGBA 1MATA 1W2MA 2EA2A 4U75A 1QZYA 1KQ9A 1R5HA 1A16A 5D6EA 1QXWA 2GA2A 2Q96A 4IKSA 2Q8KA 1JAWA 4HXXA 2ZSGA 2BWYA 2HOWA 2B3KA 2NQ7A 2BWWA 3PKDA 3L24A 4QR8A 1YJ3A 1WN1A 3PKEA 1WL9A 4EGEA 2Q93A 5CDVA 4JUQA 3IU9A 2EVMA 1YW8A 2GTXA 1YW9A 2GG2A 2OAZA 3PKAA 4FLKA 5JFRA 2B3HA 2BWSA 2GG9A 3CTZA 4FLIA 5JHUA 4IDYA 4U69A 3IG4A 4U6CA 2GG8A 1KQ0A 3IU8A 2P99A 4ZWUA 4S01A 1XGSA 2NQ6A 4IPAA 2BHCA 3FM3A 4IF7A 1KP0A 2OKNA 3BIQA 3RORA 1R58A 2MATA 1WBQA 3CB5A 3IU7A 3D27A 4U6JA 1XGMA 5FCFA 1BOAA 4ZWOA 2Q94A 2G6PA 5CDLA 4S2RP 4S00A 4OOKA 4U76A 1C24A 3RVAA 3CB6A 4PV4A 1XNZA 1B59A 2GG7A 1C27A 3FMRA 2Q95A 4S2TP 2GZ5A 4FO7A 3S6BA 2EA4A 1M35A 4R60A 4IKTA 2V3YA 4RGZ1 2P98A 4FUKA 5CIKA 1XGNA 5E5BA 2BHBA 4FKCA 2DFIA 2BWVA 4RZYA 4FLJA 1C22A 3PKCA 2GU6A 1WY2A 2V3XA 1N51A 4U73A 4ZWPA 1W7VA 4U6WA 1WKMA 2V3ZA 2V6CA 2GGCA 2IW2A 4RZZA 3Q6DA 2EVOA 4U70A 4A6WA 2BB7A 1CHMA 4A6VA 1BN5A 2ADUA 3TAVA 3FMQA 4IKUA 2BHAA 2BWUA 4U6EA 3BIPA 1YW7A 2BH3A 2GU5A 1Y1NA 1B6AA 3MATA 4IU6A 5CDEA 5CE6A 4FO8A 1R5GA 1QXYA 1WLRA 1XGOA 1C21A 2P9AA 1PV9A 4U6ZA 4U1BA 2BWXA 2GG3A 4ZNGA 4U71A 1WL6A 1O0XA 1C23A 2GG5A 3BITA 3L7GA 5FCHA 2GU4A 4FLLA 2GU7A 2BN7A 2Q92A 1YVMA 2EVCA 4MATA 3MR1A 3TB5A 4IKRA 5CNXA 4Z7MA 5JI6A 2BWTA 2B3LA 5D6FA 3PKBA 2GG0A 4B28A 1QXZA 2BHDA 5CLSA 4PNCA 3MX6A 4KM3A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4IEC A;  2GGB A;  1MAT A;  1W2M A;  2EA2 A;  4U75 A;  1QZY A;  1KQ9 A;  1R5H A;  1A16 A;  5D6E A;  1QXW A;  2GA2 A;  2Q96 A;  4IKS A;  2Q8K A;  1JAW A;  4HXX A;  2ZSG A;  2BWY A;  2HOW A;  2B3K A;  2NQ7 A;  2BWW A;  3PKD A;  3L24 A;  4QR8 A;  1YJ3 A;  1WN1 A;  3PKE A;  1WL9 A;  4EGE A;  2Q93 A;  5CDV A;  4JUQ A;  3IU9 A;  2EVM A;  1YW8 A;  2GTX A;  1YW9 A;  2GG2 A;  2OAZ A;  3PKA A;  4FLK A;  5JFR A;  2B3H A;  2BWS A;  2GG9 A;  3CTZ A;  4FLI A;  5JHU A;  4IDY A;  4U69 A;  3IG4 A;  4U6C A;  2GG8 A;  1KQ0 A;  3IU8 A;  2P99 A;  4ZWU A;  4S01 A;  1XGS A;  2NQ6 A;  4IPA A;  2BHC A;  3FM3 A;  4IF7 A;  1KP0 A;  2OKN A;  3BIQ A;  3ROR A;  1R58 A;  2MAT A;  1WBQ A;  3CB5 A;  3IU7 A;  3D27 A;  4U6J A;  1XGM A;  5FCF A;  1BOA A;  4ZWO A;  2Q94 A;  2G6P A;  5CDL A;  4S2R P;  4S00 A;  4OOK A;  4U76 A;  1C24 A;  3RVA A;  3CB6 A;  4PV4 A;  1XNZ A;  1B59 A;  2GG7 A;  1C27 A;  3FMR A;  2Q95 A;  4S2T P;  2GZ5 A;  4FO7 A;  3S6B A;  2EA4 A;  1M35 A;  4R60 A;  4IKT A;  2V3Y A;  4RGZ 1;  2P98 A;  4FUK A;  5CIK A;  1XGN A;  5E5B A;  2BHB A;  4FKC A;  2DFI A;  2BWV A;  4RZY A;  4FLJ A;  1C22 A;  3PKC A;  2GU6 A;  1WY2 A;  2V3X A;  1N51 A;  4U73 A;  4ZWP A;  1W7V A;  4U6W A;  1WKM A;  2V3Z A;  2V6C A;  2GGC A;  2IW2 A;  4RZZ A;  3Q6D A;  2EVO A;  4U70 A;  4A6W A;  2BB7 A;  1CHM A;  4A6V A;  1BN5 A;  2ADU A;  3TAV A;  3FMQ A;  4IKU A;  2BHA A;  2BWU A;  4U6E A;  3BIP A;  1YW7 A;  2BH3 A;  2GU5 A;  1Y1N A;  1B6A A;  3MAT A;  4IU6 A;  5CDE A;  5CE6 A;  4FO8 A;  1R5G A;  1QXY A;  1WLR A;  1XGO A;  1C21 A;  2P9A A;  1PV9 A;  4U6Z A;  4U1B A;  2BWX A;  2GG3 A;  4ZNG A;  4U71 A;  1WL6 A;  1O0X A;  1C23 A;  2GG5 A;  3BIT A;  3L7G A;  5FCH A;  2GU4 A;  4FLL A;  2GU7 A;  2BN7 A;  2Q92 A;  1YVM A;  2EVC A;  4MAT A;  3MR1 A;  3TB5 A;  4IKR A;  5CNX A;  4Z7M A;  5JI6 A;  2BWT A;  2B3L A;  5D6F A;  3PKB A;  2GG0 A;  4B28 A;  1QXZ A;  2BHD A;  5CLS A;  4PNC A;  3MX6 A;  4KM3 A; 
#chains in the Genus database with same CATH topology
 4IEC A;  2GGB A;  1MAT A;  1W2M A;  2EA2 A;  4U75 A;  1QZY A;  1KQ9 A;  1R5H A;  1A16 A;  5D6E A;  1QXW A;  2GA2 A;  2Q96 A;  4IKS A;  2Q8K A;  1JAW A;  4HXX A;  2ZSG A;  2BWY A;  2HOW A;  2B3K A;  2NQ7 A;  2BWW A;  3PKD A;  3L24 A;  4QR8 A;  1YJ3 A;  1WN1 A;  3PKE A;  1WL9 A;  4EGE A;  2Q93 A;  5CDV A;  4JUQ A;  3IU9 A;  2EVM A;  1YW8 A;  2GTX A;  1YW9 A;  2GG2 A;  2OAZ A;  3PKA A;  4FLK A;  5JFR A;  2B3H A;  2BWS A;  2GG9 A;  3CTZ A;  4FLI A;  5JHU A;  4IDY A;  4U69 A;  3IG4 A;  4U6C A;  2GG8 A;  1KQ0 A;  3IU8 A;  2P99 A;  4ZWU A;  4S01 A;  1XGS A;  2NQ6 A;  4IPA A;  2BHC A;  3FM3 A;  4IF7 A;  1KP0 A;  2OKN A;  3BIQ A;  3ROR A;  1R58 A;  2MAT A;  1WBQ A;  3CB5 A;  3IU7 A;  3D27 A;  4U6J A;  1XGM A;  5FCF A;  1BOA A;  4ZWO A;  2Q94 A;  2G6P A;  5CDL A;  4S2R P;  4S00 A;  4OOK A;  4U76 A;  1C24 A;  3RVA A;  3CB6 A;  4PV4 A;  1XNZ A;  1B59 A;  2GG7 A;  1C27 A;  3FMR A;  2Q95 A;  4S2T P;  2GZ5 A;  4FO7 A;  3S6B A;  2EA4 A;  1M35 A;  4R60 A;  4IKT A;  2V3Y A;  4RGZ 1;  2P98 A;  4FUK A;  5CIK A;  1XGN A;  5E5B A;  2BHB A;  4FKC A;  2DFI A;  2BWV A;  4RZY A;  4FLJ A;  1C22 A;  3PKC A;  2GU6 A;  1WY2 A;  2V3X A;  1N51 A;  4U73 A;  4ZWP A;  1W7V A;  4U6W A;  1WKM A;  2V3Z A;  2V6C A;  2GGC A;  2IW2 A;  4RZZ A;  3Q6D A;  2EVO A;  4U70 A;  4A6W A;  2BB7 A;  1CHM A;  4A6V A;  1BN5 A;  2ADU A;  3TAV A;  3FMQ A;  4IKU A;  2BHA A;  2BWU A;  4U6E A;  3BIP A;  1YW7 A;  2BH3 A;  2GU5 A;  1Y1N A;  1B6A A;  3MAT A;  4IU6 A;  5CDE A;  5CE6 A;  4FO8 A;  1R5G A;  1QXY A;  1WLR A;  1XGO A;  1C21 A;  2P9A A;  1PV9 A;  4U6Z A;  4U1B A;  2BWX A;  2GG3 A;  4ZNG A;  4U71 A;  1WL6 A;  1O0X A;  1C23 A;  2GG5 A;  3BIT A;  3L7G A;  5FCH A;  2GU4 A;  4FLL A;  2GU7 A;  2BN7 A;  2Q92 A;  1YVM A;  2EVC A;  4MAT A;  3MR1 A;  3TB5 A;  4IKR A;  5CNX A;  4Z7M A;  5JI6 A;  2BWT A;  2B3L A;  5D6F A;  3PKB A;  2GG0 A;  4B28 A;  1QXZ A;  2BHD A;  5CLS A;  4PNC A;  3MX6 A;  4KM3 A; 
#chains in the Genus database with same CATH homology
 4IEC A;  2GGB A;  1MAT A;  1W2M A;  2EA2 A;  4U75 A;  1QZY A;  1KQ9 A;  1R5H A;  1A16 A;  5D6E A;  1QXW A;  2GA2 A;  2Q96 A;  4IKS A;  2Q8K A;  1JAW A;  4HXX A;  2ZSG A;  2BWY A;  2HOW A;  2B3K A;  2NQ7 A;  2BWW A;  3PKD A;  3L24 A;  4QR8 A;  1YJ3 A;  1WN1 A;  3PKE A;  1WL9 A;  4EGE A;  2Q93 A;  5CDV A;  4JUQ A;  3IU9 A;  2EVM A;  1YW8 A;  2GTX A;  1YW9 A;  2GG2 A;  2OAZ A;  3PKA A;  4FLK A;  5JFR A;  2B3H A;  2BWS A;  2GG9 A;  3CTZ A;  4FLI A;  5JHU A;  4IDY A;  4U69 A;  3IG4 A;  4U6C A;  2GG8 A;  1KQ0 A;  3IU8 A;  2P99 A;  4ZWU A;  4S01 A;  1XGS A;  2NQ6 A;  4IPA A;  2BHC A;  3FM3 A;  4IF7 A;  1KP0 A;  2OKN A;  3BIQ A;  3ROR A;  1R58 A;  2MAT A;  1WBQ A;  3CB5 A;  3IU7 A;  3D27 A;  4U6J A;  1XGM A;  5FCF A;  1BOA A;  4ZWO A;  2Q94 A;  2G6P A;  5CDL A;  4S2R P;  4S00 A;  4OOK A;  4U76 A;  1C24 A;  3RVA A;  3CB6 A;  4PV4 A;  1XNZ A;  1B59 A;  2GG7 A;  1C27 A;  3FMR A;  2Q95 A;  4S2T P;  2GZ5 A;  4FO7 A;  3S6B A;  2EA4 A;  1M35 A;  4R60 A;  4IKT A;  2V3Y A;  4RGZ 1;  2P98 A;  4FUK A;  5CIK A;  1XGN A;  5E5B A;  2BHB A;  4FKC A;  2DFI A;  2BWV A;  4RZY A;  4FLJ A;  1C22 A;  3PKC A;  2GU6 A;  1WY2 A;  2V3X A;  1N51 A;  4U73 A;  4ZWP A;  1W7V A;  4U6W A;  1WKM A;  2V3Z A;  2V6C A;  2GGC A;  2IW2 A;  4RZZ A;  3Q6D A;  2EVO A;  4U70 A;  4A6W A;  2BB7 A;  1CHM A;  4A6V A;  1BN5 A;  2ADU A;  3TAV A;  3FMQ A;  4IKU A;  2BHA A;  2BWU A;  4U6E A;  3BIP A;  1YW7 A;  2BH3 A;  2GU5 A;  1Y1N A;  1B6A A;  3MAT A;  4IU6 A;  5CDE A;  5CE6 A;  4FO8 A;  1R5G A;  1QXY A;  1WLR A;  1XGO A;  1C21 A;  2P9A A;  1PV9 A;  4U6Z A;  4U1B A;  2BWX A;  2GG3 A;  4ZNG A;  4U71 A;  1WL6 A;  1O0X A;  1C23 A;  2GG5 A;  3BIT A;  3L7G A;  5FCH A;  2GU4 A;  4FLL A;  2GU7 A;  2BN7 A;  2Q92 A;  1YVM A;  2EVC A;  4MAT A;  3MR1 A;  3TB5 A;  4IKR A;  5CNX A;  4Z7M A;  5JI6 A;  2BWT A;  2B3L A;  5D6F A;  3PKB A;  2GG0 A;  4B28 A;  1QXZ A;  2BHD A;  5CLS A;  4PNC A;  3MX6 A;  4KM3 A; 
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