3S6BA

Crystal structure of methionine aminopeptidase 1b from plasmodium falciparum, pf10_0150
Total Genus 109

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
109
sequence length
345
structure length
345
Chain Sequence
HLKTIVKKHLSPENFDPTNRKYWVYDDHLKNFVNFKFTGDVRPWPLSKINHVPSHIERPDYAISSIPESELIYKRKSDIYVNNEEEIQRIREACILGRKTLDYAHTLVSPGVTTDEIDRKVHEFIIKNNAYPSTLNYYKFPKSCCTSVNEIVCHGIPDYRPLKSGDIINIDISVFYKGVHSDLNETYFVGDINDVPKEGKELVETCYFSLMEAIKKCKPGMFYKNIGTLIDAYVSKKNFSVVRSYSGHGVGKLFHSNPTVPHFKKNKAVGIMKPGHVFTIEPMINQGHYSDVLWPDQWTSATSDGKLSAQFEHTLLITNNGVEILTKRTQDSPPLGFDTKDELYY
5010015020025030030025020015010050
020406080100Genus Matrix

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH1 (23-32)TI1 (33-36)S13 (298-302)TI3 (38-41)AH3 (136-150)TI4 (42-45)TII2 (156-159)3H1 (45-47)3H3 (159-161)AH2 (106-129)TIV1 (48-51)EMPTYTI5 (49-52)TI6 (50-53)TI9 (54-57)TI8 (52-55)TI10 (75-78)AH5 (245-258)TI11 (81-84)TIV4 (272-275)TIV2 (83-86)TI12 (84-87)3H2 (90-92)S16 (322-324)TI13 (97-100)TII3 (185-188)TII'1 (170-173)TIV6 (307-310)S2 (153-154)S3 (166-170)S6 (188-198)S5 (183-184)S15 (313-315)TIV5 (285-288)S11 (278-282)S7 (201-211)S19 (343-346)3H4 (214-216)AH4 (219-238)S10 (269-271)TVIII1 (273-276)TII4 (240-243)S8 (243-244)TVIII2 (275-278)S9 (262-263)TI15 (264-267)TI16 (316-319)S14 (305-307)S12 (293-294)TII5 (295-298)TIV7 (318-321)TI17 (324-327)S18 (335-340)TI18 (340-343)TII1 (131-134)S1 (134-135)S4 (173-175)TI14 (154-157)TIV3 (197-200)S17 (330-332)Updating...
connected with : NaN
molecule tags Hydrolase
source organism Plasmodium falciparum
publication title Crystal structure of methionine aminopeptidase 1b from Plasmodium Falciparum, PF10_0150
rcsb
molecule keywords Methionine aminopeptidase
total genus 109
structure length 345
sequence length 345
ec nomenclature ec 3.4.11.18: Methionyl aminopeptidase.
pdb deposition date 2011-05-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00557 Peptidase_M24 Metallopeptidase family M24
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.230.10 Alpha Beta Alpha-Beta Complex Creatine Amidinohydrolase Creatinase/methionine aminopeptidase superfamily 3s6bA01
2HOWA 3BIPA 2GGBA 2EVMA 4U6EA 4IKSA 1WL6A 3MR1A 4IU6A 4U6WA 4FLIA 2G6PA 4ZNGA 2BWUA 3PKCA 1JAWA 2GG9A 4U76A 3L7GA 4FUKA 2MATA 2P9AA 1N51A 1C23A 2Q93A 2V3ZA 2ZSGA 4OOKA 3TB5A 1YJ3A 2BWVA 2B3KA 1QZYA 1YVMA 4PV4A 2GZ5A 2Q95A 2V3XA 1MATA 4A6WA 4U6JA 2EA2A 4HXXA 1WLRA 3PKBA 2EVCA 4PNCA 4RZZA 1M35A 4JUQA 4QR8A 4B28A 4EGEA 1B59A 1YW7A 2OKNA 5JFRA 4S2TP 2Q94A 3BIQA 4U73A 2V3YA 1C22A 1BOAA 4U70A 4FLJA 2GGCA 1B6AA 2GU7A 2Q8KA 4ZWPA 2B3HA 5CDVA 5CDLA 2GG5A 4IDYA 4U71A 4FO7A 1QXZA 5CDEA 2BHBA 1YW9A 1CHMA 2GU6A 4RZYA 1WN1A 4U6CA 1WY2A 1KQ9A 5CE6A 3FMRA 4FO8A 2Q92A 1BN5A 4S2RP 2BB7A 2BHCA 2BWYA 3MX6A 1R5HA 1C24A 1WKMA 3IU7A 1W7VA 2DFIA 3CB5A 3IU9A 3RORA 1QXYA 5E5BA 2BH3A 5JI6A 1WL9A 3PKEA 4ZWOA 4IPAA 4FKCA 5D6FA 1W2MA 2EVOA 2V6CA 4FLKA 4U75A 2GG0A 1KP0A 3IG4A 4IKRA 5CNXA 5FCHA 5JHUA 1R58A 3Q6DA 2GG3A 3S6BA 3PKDA 3D27A 1XNZA 4ZWUA 3TAVA 2GG8A 3CB6A 4IKUA 1Y1NA 3CTZA 3FM3A 2P99A 1XGSA 2Q96A 2BWWA 1XGOA 4IKTA 5CLSA 2GG7A 1XGNA 1QXWA 3FMQA 2GA2A 2NQ7A 2BHAA 1O0XA 1C21A 1YW8A 4R60A 2GG2A 5D6EA 3RVAA 4U1BA 2P98A 4A6VA 4IECA 2BN7A 4KM3A 2BWXA 2IW2A 4U6ZA 4U69A 1R5GA 4S01A 4Z7MA 5FCFA 2GU5A 2EA4A 3MATA 2GU4A 2GTXA 2NQ6A 1XGMA 4MATA 1PV9A 5CIKA 2BWSA 3BITA 2OAZA 1C27A 3L24A 4S00A 2ADUA 2B3LA 4FLLA 1WBQA 3IU8A 3PKAA 4RGZ1 1KQ0A 1A16A 2BHDA 4IF7A 2BWTA
chains in the Genus database with same CATH superfamily
2HOWA 3BIPA 2GGBA 2EVMA 4U6EA 4IKSA 1WL6A 3MR1A 4IU6A 4U6WA 4FLIA 2G6PA 4ZNGA 2BWUA 3PKCA 1JAWA 2GG9A 4U76A 3L7GA 4FUKA 2MATA 2P9AA 1N51A 1C23A 2Q93A 2V3ZA 2ZSGA 4OOKA 3TB5A 1YJ3A 2BWVA 2B3KA 1QZYA 1YVMA 4PV4A 2GZ5A 2Q95A 2V3XA 1MATA 4A6WA 4U6JA 2EA2A 4HXXA 1WLRA 3PKBA 2EVCA 4PNCA 4RZZA 1M35A 4JUQA 4QR8A 4B28A 4EGEA 1B59A 1YW7A 2OKNA 5JFRA 4S2TP 2Q94A 3BIQA 4U73A 2V3YA 1C22A 1BOAA 4U70A 4FLJA 2GGCA 1B6AA 2GU7A 2Q8KA 4ZWPA 2B3HA 5CDVA 5CDLA 2GG5A 4IDYA 4U71A 4FO7A 1QXZA 5CDEA 2BHBA 1YW9A 1CHMA 2GU6A 4RZYA 1WN1A 4U6CA 1WY2A 1KQ9A 5CE6A 3FMRA 4FO8A 2Q92A 1BN5A 4S2RP 2BB7A 2BHCA 2BWYA 3MX6A 1R5HA 1C24A 1WKMA 3IU7A 1W7VA 2DFIA 3CB5A 3IU9A 3RORA 1QXYA 5E5BA 2BH3A 5JI6A 1WL9A 3PKEA 4ZWOA 4IPAA 4FKCA 5D6FA 1W2MA 2EVOA 2V6CA 4FLKA 4U75A 2GG0A 1KP0A 3IG4A 4IKRA 5CNXA 5FCHA 5JHUA 1R58A 3Q6DA 2GG3A 3S6BA 3PKDA 3D27A 1XNZA 4ZWUA 3TAVA 2GG8A 3CB6A 4IKUA 1Y1NA 3CTZA 3FM3A 2P99A 1XGSA 2Q96A 2BWWA 1XGOA 4IKTA 5CLSA 2GG7A 1XGNA 1QXWA 3FMQA 2GA2A 2NQ7A 2BHAA 1O0XA 1C21A 1YW8A 4R60A 2GG2A 5D6EA 3RVAA 4U1BA 2P98A 4A6VA 4IECA 2BN7A 4KM3A 2BWXA 2IW2A 4U6ZA 4U69A 1R5GA 4S01A 4Z7MA 5FCFA 2GU5A 2EA4A 3MATA 2GU4A 2GTXA 2NQ6A 1XGMA 4MATA 1PV9A 5CIKA 2BWSA 3BITA 2OAZA 1C27A 3L24A 4S00A 2ADUA 2B3LA 4FLLA 1WBQA 3IU8A 3PKAA 4RGZ1 1KQ0A 1A16A 2BHDA 4IF7A 2BWTA
chains in the Genus database with same CATH topology
2HOWA 3BIPA 2GGBA 2EVMA 4U6EA 4IKSA 1WL6A 3MR1A 4IU6A 4U6WA 4FLIA 2G6PA 4ZNGA 2BWUA 3PKCA 1JAWA 2GG9A 4U76A 3L7GA 4FUKA 2MATA 2P9AA 1N51A 1C23A 2Q93A 2V3ZA 2ZSGA 4OOKA 3TB5A 1YJ3A 2BWVA 2B3KA 1QZYA 1YVMA 4PV4A 2GZ5A 2Q95A 2V3XA 1MATA 4A6WA 4U6JA 2EA2A 4HXXA 1WLRA 3PKBA 2EVCA 4PNCA 4RZZA 1M35A 4JUQA 4QR8A 4B28A 4EGEA 1B59A 1YW7A 2OKNA 5JFRA 4S2TP 2Q94A 3BIQA 4U73A 2V3YA 1C22A 1BOAA 4U70A 4FLJA 2GGCA 1B6AA 2GU7A 2Q8KA 4ZWPA 2B3HA 5CDVA 5CDLA 2GG5A 4IDYA 4U71A 4FO7A 1QXZA 5CDEA 2BHBA 1YW9A 1CHMA 2GU6A 4RZYA 1WN1A 4U6CA 1WY2A 1KQ9A 5CE6A 3FMRA 4FO8A 2Q92A 1BN5A 4S2RP 2BB7A 2BHCA 2BWYA 3MX6A 1R5HA 1C24A 1WKMA 3IU7A 1W7VA 2DFIA 3CB5A 3IU9A 3RORA 1QXYA 5E5BA 2BH3A 5JI6A 1WL9A 3PKEA 4ZWOA 4IPAA 4FKCA 5D6FA 1W2MA 2EVOA 2V6CA 4FLKA 4U75A 2GG0A 1KP0A 3IG4A 4IKRA 5CNXA 5FCHA 5JHUA 1R58A 3Q6DA 2GG3A 3S6BA 3PKDA 3D27A 1XNZA 4ZWUA 3TAVA 2GG8A 3CB6A 4IKUA 1Y1NA 3CTZA 3FM3A 2P99A 1XGSA 2Q96A 2BWWA 1XGOA 4IKTA 5CLSA 2GG7A 1XGNA 1QXWA 3FMQA 2GA2A 2NQ7A 2BHAA 1O0XA 1C21A 1YW8A 4R60A 2GG2A 5D6EA 3RVAA 4U1BA 2P98A 4A6VA 4IECA 2BN7A 4KM3A 2BWXA 2IW2A 4U6ZA 4U69A 1R5GA 4S01A 4Z7MA 5FCFA 2GU5A 2EA4A 3MATA 2GU4A 2GTXA 2NQ6A 1XGMA 4MATA 1PV9A 5CIKA 2BWSA 3BITA 2OAZA 1C27A 3L24A 4S00A 2ADUA 2B3LA 4FLLA 1WBQA 3IU8A 3PKAA 4RGZ1 1KQ0A 1A16A 2BHDA 4IF7A 2BWTA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2HOW A;  3BIP A;  2GGB A;  2EVM A;  4U6E A;  4IKS A;  1WL6 A;  3MR1 A;  4IU6 A;  4U6W A;  4FLI A;  2G6P A;  4ZNG A;  2BWU A;  3PKC A;  1JAW A;  2GG9 A;  4U76 A;  3L7G A;  4FUK A;  2MAT A;  2P9A A;  1N51 A;  1C23 A;  2Q93 A;  2V3Z A;  2ZSG A;  4OOK A;  3TB5 A;  1YJ3 A;  2BWV A;  2B3K A;  1QZY A;  1YVM A;  4PV4 A;  2GZ5 A;  2Q95 A;  2V3X A;  1MAT A;  4A6W A;  4U6J A;  2EA2 A;  4HXX A;  1WLR A;  3PKB A;  2EVC A;  4PNC A;  4RZZ A;  1M35 A;  4JUQ A;  4QR8 A;  4B28 A;  4EGE A;  1B59 A;  1YW7 A;  2OKN A;  5JFR A;  4S2T P;  2Q94 A;  3BIQ A;  4U73 A;  2V3Y A;  1C22 A;  1BOA A;  4U70 A;  4FLJ A;  2GGC A;  1B6A A;  2GU7 A;  2Q8K A;  4ZWP A;  2B3H A;  5CDV A;  5CDL A;  2GG5 A;  4IDY A;  4U71 A;  4FO7 A;  1QXZ A;  5CDE A;  2BHB A;  1YW9 A;  1CHM A;  2GU6 A;  4RZY A;  1WN1 A;  4U6C A;  1WY2 A;  1KQ9 A;  5CE6 A;  3FMR A;  4FO8 A;  2Q92 A;  1BN5 A;  4S2R P;  2BB7 A;  2BHC A;  2BWY A;  3MX6 A;  1R5H A;  1C24 A;  1WKM A;  3IU7 A;  1W7V A;  2DFI A;  3CB5 A;  3IU9 A;  3ROR A;  1QXY A;  5E5B A;  2BH3 A;  5JI6 A;  1WL9 A;  3PKE A;  4ZWO A;  4IPA A;  4FKC A;  5D6F A;  1W2M A;  2EVO A;  2V6C A;  4FLK A;  4U75 A;  2GG0 A;  1KP0 A;  3IG4 A;  4IKR A;  5CNX A;  5FCH A;  5JHU A;  1R58 A;  3Q6D A;  2GG3 A;  3S6B A;  3PKD A;  3D27 A;  1XNZ A;  4ZWU A;  3TAV A;  2GG8 A;  3CB6 A;  4IKU A;  1Y1N A;  3CTZ A;  3FM3 A;  2P99 A;  1XGS A;  2Q96 A;  2BWW A;  1XGO A;  4IKT A;  5CLS A;  2GG7 A;  1XGN A;  1QXW A;  3FMQ A;  2GA2 A;  2NQ7 A;  2BHA A;  1O0X A;  1C21 A;  1YW8 A;  4R60 A;  2GG2 A;  5D6E A;  3RVA A;  4U1B A;  2P98 A;  4A6V A;  4IEC A;  2BN7 A;  4KM3 A;  2BWX A;  2IW2 A;  4U6Z A;  4U69 A;  1R5G A;  4S01 A;  4Z7M A;  5FCF A;  2GU5 A;  2EA4 A;  3MAT A;  2GU4 A;  2GTX A;  2NQ6 A;  1XGM A;  4MAT A;  1PV9 A;  5CIK A;  2BWS A;  3BIT A;  2OAZ A;  1C27 A;  3L24 A;  4S00 A;  2ADU A;  2B3L A;  4FLL A;  1WBQ A;  3IU8 A;  3PKA A;  4RGZ 1;  1KQ0 A;  1A16 A;  2BHD A;  4IF7 A;  2BWT A; 
#chains in the Genus database with same CATH topology
 2HOW A;  3BIP A;  2GGB A;  2EVM A;  4U6E A;  4IKS A;  1WL6 A;  3MR1 A;  4IU6 A;  4U6W A;  4FLI A;  2G6P A;  4ZNG A;  2BWU A;  3PKC A;  1JAW A;  2GG9 A;  4U76 A;  3L7G A;  4FUK A;  2MAT A;  2P9A A;  1N51 A;  1C23 A;  2Q93 A;  2V3Z A;  2ZSG A;  4OOK A;  3TB5 A;  1YJ3 A;  2BWV A;  2B3K A;  1QZY A;  1YVM A;  4PV4 A;  2GZ5 A;  2Q95 A;  2V3X A;  1MAT A;  4A6W A;  4U6J A;  2EA2 A;  4HXX A;  1WLR A;  3PKB A;  2EVC A;  4PNC A;  4RZZ A;  1M35 A;  4JUQ A;  4QR8 A;  4B28 A;  4EGE A;  1B59 A;  1YW7 A;  2OKN A;  5JFR A;  4S2T P;  2Q94 A;  3BIQ A;  4U73 A;  2V3Y A;  1C22 A;  1BOA A;  4U70 A;  4FLJ A;  2GGC A;  1B6A A;  2GU7 A;  2Q8K A;  4ZWP A;  2B3H A;  5CDV A;  5CDL A;  2GG5 A;  4IDY A;  4U71 A;  4FO7 A;  1QXZ A;  5CDE A;  2BHB A;  1YW9 A;  1CHM A;  2GU6 A;  4RZY A;  1WN1 A;  4U6C A;  1WY2 A;  1KQ9 A;  5CE6 A;  3FMR A;  4FO8 A;  2Q92 A;  1BN5 A;  4S2R P;  2BB7 A;  2BHC A;  2BWY A;  3MX6 A;  1R5H A;  1C24 A;  1WKM A;  3IU7 A;  1W7V A;  2DFI A;  3CB5 A;  3IU9 A;  3ROR A;  1QXY A;  5E5B A;  2BH3 A;  5JI6 A;  1WL9 A;  3PKE A;  4ZWO A;  4IPA A;  4FKC A;  5D6F A;  1W2M A;  2EVO A;  2V6C A;  4FLK A;  4U75 A;  2GG0 A;  1KP0 A;  3IG4 A;  4IKR A;  5CNX A;  5FCH A;  5JHU A;  1R58 A;  3Q6D A;  2GG3 A;  3S6B A;  3PKD A;  3D27 A;  1XNZ A;  4ZWU A;  3TAV A;  2GG8 A;  3CB6 A;  4IKU A;  1Y1N A;  3CTZ A;  3FM3 A;  2P99 A;  1XGS A;  2Q96 A;  2BWW A;  1XGO A;  4IKT A;  5CLS A;  2GG7 A;  1XGN A;  1QXW A;  3FMQ A;  2GA2 A;  2NQ7 A;  2BHA A;  1O0X A;  1C21 A;  1YW8 A;  4R60 A;  2GG2 A;  5D6E A;  3RVA A;  4U1B A;  2P98 A;  4A6V A;  4IEC A;  2BN7 A;  4KM3 A;  2BWX A;  2IW2 A;  4U6Z A;  4U69 A;  1R5G A;  4S01 A;  4Z7M A;  5FCF A;  2GU5 A;  2EA4 A;  3MAT A;  2GU4 A;  2GTX A;  2NQ6 A;  1XGM A;  4MAT A;  1PV9 A;  5CIK A;  2BWS A;  3BIT A;  2OAZ A;  1C27 A;  3L24 A;  4S00 A;  2ADU A;  2B3L A;  4FLL A;  1WBQ A;  3IU8 A;  3PKA A;  4RGZ 1;  1KQ0 A;  1A16 A;  2BHD A;  4IF7 A;  2BWT A; 
#chains in the Genus database with same CATH homology
 2HOW A;  3BIP A;  2GGB A;  2EVM A;  4U6E A;  4IKS A;  1WL6 A;  3MR1 A;  4IU6 A;  4U6W A;  4FLI A;  2G6P A;  4ZNG A;  2BWU A;  3PKC A;  1JAW A;  2GG9 A;  4U76 A;  3L7G A;  4FUK A;  2MAT A;  2P9A A;  1N51 A;  1C23 A;  2Q93 A;  2V3Z A;  2ZSG A;  4OOK A;  3TB5 A;  1YJ3 A;  2BWV A;  2B3K A;  1QZY A;  1YVM A;  4PV4 A;  2GZ5 A;  2Q95 A;  2V3X A;  1MAT A;  4A6W A;  4U6J A;  2EA2 A;  4HXX A;  1WLR A;  3PKB A;  2EVC A;  4PNC A;  4RZZ A;  1M35 A;  4JUQ A;  4QR8 A;  4B28 A;  4EGE A;  1B59 A;  1YW7 A;  2OKN A;  5JFR A;  4S2T P;  2Q94 A;  3BIQ A;  4U73 A;  2V3Y A;  1C22 A;  1BOA A;  4U70 A;  4FLJ A;  2GGC A;  1B6A A;  2GU7 A;  2Q8K A;  4ZWP A;  2B3H A;  5CDV A;  5CDL A;  2GG5 A;  4IDY A;  4U71 A;  4FO7 A;  1QXZ A;  5CDE A;  2BHB A;  1YW9 A;  1CHM A;  2GU6 A;  4RZY A;  1WN1 A;  4U6C A;  1WY2 A;  1KQ9 A;  5CE6 A;  3FMR A;  4FO8 A;  2Q92 A;  1BN5 A;  4S2R P;  2BB7 A;  2BHC A;  2BWY A;  3MX6 A;  1R5H A;  1C24 A;  1WKM A;  3IU7 A;  1W7V A;  2DFI A;  3CB5 A;  3IU9 A;  3ROR A;  1QXY A;  5E5B A;  2BH3 A;  5JI6 A;  1WL9 A;  3PKE A;  4ZWO A;  4IPA A;  4FKC A;  5D6F A;  1W2M A;  2EVO A;  2V6C A;  4FLK A;  4U75 A;  2GG0 A;  1KP0 A;  3IG4 A;  4IKR A;  5CNX A;  5FCH A;  5JHU A;  1R58 A;  3Q6D A;  2GG3 A;  3S6B A;  3PKD A;  3D27 A;  1XNZ A;  4ZWU A;  3TAV A;  2GG8 A;  3CB6 A;  4IKU A;  1Y1N A;  3CTZ A;  3FM3 A;  2P99 A;  1XGS A;  2Q96 A;  2BWW A;  1XGO A;  4IKT A;  5CLS A;  2GG7 A;  1XGN A;  1QXW A;  3FMQ A;  2GA2 A;  2NQ7 A;  2BHA A;  1O0X A;  1C21 A;  1YW8 A;  4R60 A;  2GG2 A;  5D6E A;  3RVA A;  4U1B A;  2P98 A;  4A6V A;  4IEC A;  2BN7 A;  4KM3 A;  2BWX A;  2IW2 A;  4U6Z A;  4U69 A;  1R5G A;  4S01 A;  4Z7M A;  5FCF A;  2GU5 A;  2EA4 A;  3MAT A;  2GU4 A;  2GTX A;  2NQ6 A;  1XGM A;  4MAT A;  1PV9 A;  5CIK A;  2BWS A;  3BIT A;  2OAZ A;  1C27 A;  3L24 A;  4S00 A;  2ADU A;  2B3L A;  4FLL A;  1WBQ A;  3IU8 A;  3PKA A;  4RGZ 1;  1KQ0 A;  1A16 A;  2BHD A;  4IF7 A;  2BWT A; 
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