4FO7A

Pseudomonas aeruginosa metap, in mn form
Total Genus 74
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
74
sequence length
258
structure length
258
Chain Sequence
TVTIKTPDDIEKMRIAGRLAAEVLEMIGEHIKPGVTTEELDRICHDYIVNEQKAIPAPLNYKGFPKSICTSINHVVCHGIPNEKPLKEGDILNVDITVIKDGYHGDTSKMFLVGKTPEWADRLCQITQECMYKGISVVRPGAHLGDIGEIIQKHAEKNGFSVVREYCGHGIGKVFHEEPQVLHYGRAGTGIELKEGMIFTIEPMINQGRPETRLLGDGWTAITKDRKLSAQWEHTVLVTADGYEILTLRNDETFPRTS
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
Chord Diagram
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publication title Methionine excision captured by the structures of a methionine aminopeptidase
rcsb
molecule keywords Methionine aminopeptidase
molecule tags Hydrolase
source organism Pseudomonas aeruginosa
total genus 74
structure length 258
sequence length 258
chains with identical sequence B, C, D
ec nomenclature ec 3.4.11.18: Methionyl aminopeptidase.
pdb deposition date 2012-06-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00557 Peptidase_M24 Metallopeptidase family M24
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.230.10 Alpha Beta Alpha-Beta Complex Creatine Amidinohydrolase Creatinase/methionine aminopeptidase superfamily 4fo7A00
2V6CA 3L7GA 5JHUA 2EVMA 2Q96A 2IW2A 2GGBA 2ZSGA 4FLIA 4FUKA 2GU5A 5CDEA 4EGEA 2BHDA 1R58A 1WLRA 1R5HA 3IU9A 1CHMA 4U76A 1WN1A 2OKNA 2GZ5A 4FO8A 4B28A 2BWSA 4A6VA 4RZZA 1WBQA 3BIQA 4U1BA 2BWYA 2EVOA 4JUQA 4S2TP 1W7VA 1XGOA 5E5BA 3D27A 2GA2A 2BWWA 4Z7MA 1QZYA 3IG4A 4S01A 5CIKA 1YW7A 2Q94A 1KP0A 2BHBA 3TB5A 1Y1NA 2BN7A 1YVMA 4IDYA 4U73A 5JFRA 4FLKA 2ADUA 3MX6A 3IU7A 2Q95A 3L24A 1O0XA 4U70A 5D6EA 3TAVA 2GG0A 5CDLA 3Q6DA 4U6WA 1W2MA 4IF7A 2BHAA 2GGCA 4HXXA 2B3KA 2EA4A 3PKEA 3MATA 4S00A 4S2RP 1PV9A 1WKMA 1XGMA 1YW9A 3FMQA 4U6EA 3RORA 2OAZA 2BWTA 5JI6A 2GU4A 1WL6A 3RVAA 2BHCA 4RGZ1 2V3YA 3CB5A 4ZWPA 1N51A 1BOAA 4FLLA 1R5GA 4IKTA 1BN5A 1B59A 2B3HA 4IU6A 3PKDA 2NQ7A 2V3XA 5CLSA 4IPAA 1KQ9A 2P9AA 2GG8A 2EA2A 3PKBA 2BWUA 5FCHA 3CB6A 4ZNGA 1YJ3A 3FM3A 4U69A 3BIPA 2GU6A 4IKRA 5FCFA 4IKUA 4ZWUA 1MATA 2HOWA 2BB7A 1XGSA 2GG5A 4ZWOA 2Q93A 2GG7A 4IECA 2G6PA 1C24A 2EVCA 3IU8A 4FLJA 4OOKA 1QXWA 1C27A 4FKCA 2GTXA 4U75A 1JAWA 2GU7A 3CTZA 4RZYA 1B6AA 2B3LA 4U6JA 3BITA 3PKAA 4PV4A 5D6FA 1C22A 2P99A 4R60A 5CE6A 1KQ0A 1XNZA 1YW8A 1WL9A 1WY2A 2GG2A 2V3ZA 4KM3A 4QR8A 1XGNA 2MATA 4U71A 4MATA 3FMRA 2BH3A 4PNCA 2BWXA 1QXZA 2Q8KA 1C23A 2NQ6A 4U6CA 2P98A 1C21A 2GG9A 1M35A 2GG3A 2DFIA 3MR1A 4FO7A 5CNXA 3PKCA 1QXYA 5CDVA 1A16A 3S6BA 2Q92A 4U6ZA 4A6WA 4IKSA 2BWVA
chains in the Genus database with same CATH superfamily
2V6CA 3L7GA 5JHUA 2EVMA 2Q96A 2IW2A 2GGBA 2ZSGA 4FLIA 4FUKA 2GU5A 5CDEA 4EGEA 2BHDA 1R58A 1WLRA 1R5HA 3IU9A 1CHMA 4U76A 1WN1A 2OKNA 2GZ5A 4FO8A 4B28A 2BWSA 4A6VA 4RZZA 1WBQA 3BIQA 4U1BA 2BWYA 2EVOA 4JUQA 4S2TP 1W7VA 1XGOA 5E5BA 3D27A 2GA2A 2BWWA 4Z7MA 1QZYA 3IG4A 4S01A 5CIKA 1YW7A 2Q94A 1KP0A 2BHBA 3TB5A 1Y1NA 2BN7A 1YVMA 4IDYA 4U73A 5JFRA 4FLKA 2ADUA 3MX6A 3IU7A 2Q95A 3L24A 1O0XA 4U70A 5D6EA 3TAVA 2GG0A 5CDLA 3Q6DA 4U6WA 1W2MA 4IF7A 2BHAA 2GGCA 4HXXA 2B3KA 2EA4A 3PKEA 3MATA 4S00A 4S2RP 1PV9A 1WKMA 1XGMA 1YW9A 3FMQA 4U6EA 3RORA 2OAZA 2BWTA 5JI6A 2GU4A 1WL6A 3RVAA 2BHCA 4RGZ1 2V3YA 3CB5A 4ZWPA 1N51A 1BOAA 4FLLA 1R5GA 4IKTA 1BN5A 1B59A 2B3HA 4IU6A 3PKDA 2NQ7A 2V3XA 5CLSA 4IPAA 1KQ9A 2P9AA 2GG8A 2EA2A 3PKBA 2BWUA 5FCHA 3CB6A 4ZNGA 1YJ3A 3FM3A 4U69A 3BIPA 2GU6A 4IKRA 5FCFA 4IKUA 4ZWUA 1MATA 2HOWA 2BB7A 1XGSA 2GG5A 4ZWOA 2Q93A 2GG7A 4IECA 2G6PA 1C24A 2EVCA 3IU8A 4FLJA 4OOKA 1QXWA 1C27A 4FKCA 2GTXA 4U75A 1JAWA 2GU7A 3CTZA 4RZYA 1B6AA 2B3LA 4U6JA 3BITA 3PKAA 4PV4A 5D6FA 1C22A 2P99A 4R60A 5CE6A 1KQ0A 1XNZA 1YW8A 1WL9A 1WY2A 2GG2A 2V3ZA 4KM3A 4QR8A 1XGNA 2MATA 4U71A 4MATA 3FMRA 2BH3A 4PNCA 2BWXA 1QXZA 2Q8KA 1C23A 2NQ6A 4U6CA 2P98A 1C21A 2GG9A 1M35A 2GG3A 2DFIA 3MR1A 4FO7A 5CNXA 3PKCA 1QXYA 5CDVA 1A16A 3S6BA 2Q92A 4U6ZA 4A6WA 4IKSA 2BWVA
chains in the Genus database with same CATH topology
2V6CA 3L7GA 5JHUA 2EVMA 2Q96A 2IW2A 2GGBA 2ZSGA 4FLIA 4FUKA 2GU5A 5CDEA 4EGEA 2BHDA 1R58A 1WLRA 1R5HA 3IU9A 1CHMA 4U76A 1WN1A 2OKNA 2GZ5A 4FO8A 4B28A 2BWSA 4A6VA 4RZZA 1WBQA 3BIQA 4U1BA 2BWYA 2EVOA 4JUQA 4S2TP 1W7VA 1XGOA 5E5BA 3D27A 2GA2A 2BWWA 4Z7MA 1QZYA 3IG4A 4S01A 5CIKA 1YW7A 2Q94A 1KP0A 2BHBA 3TB5A 1Y1NA 2BN7A 1YVMA 4IDYA 4U73A 5JFRA 4FLKA 2ADUA 3MX6A 3IU7A 2Q95A 3L24A 1O0XA 4U70A 5D6EA 3TAVA 2GG0A 5CDLA 3Q6DA 4U6WA 1W2MA 4IF7A 2BHAA 2GGCA 4HXXA 2B3KA 2EA4A 3PKEA 3MATA 4S00A 4S2RP 1PV9A 1WKMA 1XGMA 1YW9A 3FMQA 4U6EA 3RORA 2OAZA 2BWTA 5JI6A 2GU4A 1WL6A 3RVAA 2BHCA 4RGZ1 2V3YA 3CB5A 4ZWPA 1N51A 1BOAA 4FLLA 1R5GA 4IKTA 1BN5A 1B59A 2B3HA 4IU6A 3PKDA 2NQ7A 2V3XA 5CLSA 4IPAA 1KQ9A 2P9AA 2GG8A 2EA2A 3PKBA 2BWUA 5FCHA 3CB6A 4ZNGA 1YJ3A 3FM3A 4U69A 3BIPA 2GU6A 4IKRA 5FCFA 4IKUA 4ZWUA 1MATA 2HOWA 2BB7A 1XGSA 2GG5A 4ZWOA 2Q93A 2GG7A 4IECA 2G6PA 1C24A 2EVCA 3IU8A 4FLJA 4OOKA 1QXWA 1C27A 4FKCA 2GTXA 4U75A 1JAWA 2GU7A 3CTZA 4RZYA 1B6AA 2B3LA 4U6JA 3BITA 3PKAA 4PV4A 5D6FA 1C22A 2P99A 4R60A 5CE6A 1KQ0A 1XNZA 1YW8A 1WL9A 1WY2A 2GG2A 2V3ZA 4KM3A 4QR8A 1XGNA 2MATA 4U71A 4MATA 3FMRA 2BH3A 4PNCA 2BWXA 1QXZA 2Q8KA 1C23A 2NQ6A 4U6CA 2P98A 1C21A 2GG9A 1M35A 2GG3A 2DFIA 3MR1A 4FO7A 5CNXA 3PKCA 1QXYA 5CDVA 1A16A 3S6BA 2Q92A 4U6ZA 4A6WA 4IKSA 2BWVA
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 2V6C A;  3L7G A;  5JHU A;  2EVM A;  2Q96 A;  2IW2 A;  2GGB A;  2ZSG A;  4FLI A;  4FUK A;  2GU5 A;  5CDE A;  4EGE A;  2BHD A;  1R58 A;  1WLR A;  1R5H A;  3IU9 A;  1CHM A;  4U76 A;  1WN1 A;  2OKN A;  2GZ5 A;  4FO8 A;  4B28 A;  2BWS A;  4A6V A;  4RZZ A;  1WBQ A;  3BIQ A;  4U1B A;  2BWY A;  2EVO A;  4JUQ A;  4S2T P;  1W7V A;  1XGO A;  5E5B A;  3D27 A;  2GA2 A;  2BWW A;  4Z7M A;  1QZY A;  3IG4 A;  4S01 A;  5CIK A;  1YW7 A;  2Q94 A;  1KP0 A;  2BHB A;  3TB5 A;  1Y1N A;  2BN7 A;  1YVM A;  4IDY A;  4U73 A;  5JFR A;  4FLK A;  2ADU A;  3MX6 A;  3IU7 A;  2Q95 A;  3L24 A;  1O0X A;  4U70 A;  5D6E A;  3TAV A;  2GG0 A;  5CDL A;  3Q6D A;  4U6W A;  1W2M A;  4IF7 A;  2BHA A;  2GGC A;  4HXX A;  2B3K A;  2EA4 A;  3PKE A;  3MAT A;  4S00 A;  4S2R P;  1PV9 A;  1WKM A;  1XGM A;  1YW9 A;  3FMQ A;  4U6E A;  3ROR A;  2OAZ A;  2BWT A;  5JI6 A;  2GU4 A;  1WL6 A;  3RVA A;  2BHC A;  4RGZ 1;  2V3Y A;  3CB5 A;  4ZWP A;  1N51 A;  1BOA A;  4FLL A;  1R5G A;  4IKT A;  1BN5 A;  1B59 A;  2B3H A;  4IU6 A;  3PKD A;  2NQ7 A;  2V3X A;  5CLS A;  4IPA A;  1KQ9 A;  2P9A A;  2GG8 A;  2EA2 A;  3PKB A;  2BWU A;  5FCH A;  3CB6 A;  4ZNG A;  1YJ3 A;  3FM3 A;  4U69 A;  3BIP A;  2GU6 A;  4IKR A;  5FCF A;  4IKU A;  4ZWU A;  1MAT A;  2HOW A;  2BB7 A;  1XGS A;  2GG5 A;  4ZWO A;  2Q93 A;  2GG7 A;  4IEC A;  2G6P A;  1C24 A;  2EVC A;  3IU8 A;  4FLJ A;  4OOK A;  1QXW A;  1C27 A;  4FKC A;  2GTX A;  4U75 A;  1JAW A;  2GU7 A;  3CTZ A;  4RZY A;  1B6A A;  2B3L A;  4U6J A;  3BIT A;  3PKA A;  4PV4 A;  5D6F A;  1C22 A;  2P99 A;  4R60 A;  5CE6 A;  1KQ0 A;  1XNZ A;  1YW8 A;  1WL9 A;  1WY2 A;  2GG2 A;  2V3Z A;  4KM3 A;  4QR8 A;  1XGN A;  2MAT A;  4U71 A;  4MAT A;  3FMR A;  2BH3 A;  4PNC A;  2BWX A;  1QXZ A;  2Q8K A;  1C23 A;  2NQ6 A;  4U6C A;  2P98 A;  1C21 A;  2GG9 A;  1M35 A;  2GG3 A;  2DFI A;  3MR1 A;  4FO7 A;  5CNX A;  3PKC A;  1QXY A;  5CDV A;  1A16 A;  3S6B A;  2Q92 A;  4U6Z A;  4A6W A;  4IKS A;  2BWV A; 
#chains in the Genus database with same CATH topology
 2V6C A;  3L7G A;  5JHU A;  2EVM A;  2Q96 A;  2IW2 A;  2GGB A;  2ZSG A;  4FLI A;  4FUK A;  2GU5 A;  5CDE A;  4EGE A;  2BHD A;  1R58 A;  1WLR A;  1R5H A;  3IU9 A;  1CHM A;  4U76 A;  1WN1 A;  2OKN A;  2GZ5 A;  4FO8 A;  4B28 A;  2BWS A;  4A6V A;  4RZZ A;  1WBQ A;  3BIQ A;  4U1B A;  2BWY A;  2EVO A;  4JUQ A;  4S2T P;  1W7V A;  1XGO A;  5E5B A;  3D27 A;  2GA2 A;  2BWW A;  4Z7M A;  1QZY A;  3IG4 A;  4S01 A;  5CIK A;  1YW7 A;  2Q94 A;  1KP0 A;  2BHB A;  3TB5 A;  1Y1N A;  2BN7 A;  1YVM A;  4IDY A;  4U73 A;  5JFR A;  4FLK A;  2ADU A;  3MX6 A;  3IU7 A;  2Q95 A;  3L24 A;  1O0X A;  4U70 A;  5D6E A;  3TAV A;  2GG0 A;  5CDL A;  3Q6D A;  4U6W A;  1W2M A;  4IF7 A;  2BHA A;  2GGC A;  4HXX A;  2B3K A;  2EA4 A;  3PKE A;  3MAT A;  4S00 A;  4S2R P;  1PV9 A;  1WKM A;  1XGM A;  1YW9 A;  3FMQ A;  4U6E A;  3ROR A;  2OAZ A;  2BWT A;  5JI6 A;  2GU4 A;  1WL6 A;  3RVA A;  2BHC A;  4RGZ 1;  2V3Y A;  3CB5 A;  4ZWP A;  1N51 A;  1BOA A;  4FLL A;  1R5G A;  4IKT A;  1BN5 A;  1B59 A;  2B3H A;  4IU6 A;  3PKD A;  2NQ7 A;  2V3X A;  5CLS A;  4IPA A;  1KQ9 A;  2P9A A;  2GG8 A;  2EA2 A;  3PKB A;  2BWU A;  5FCH A;  3CB6 A;  4ZNG A;  1YJ3 A;  3FM3 A;  4U69 A;  3BIP A;  2GU6 A;  4IKR A;  5FCF A;  4IKU A;  4ZWU A;  1MAT A;  2HOW A;  2BB7 A;  1XGS A;  2GG5 A;  4ZWO A;  2Q93 A;  2GG7 A;  4IEC A;  2G6P A;  1C24 A;  2EVC A;  3IU8 A;  4FLJ A;  4OOK A;  1QXW A;  1C27 A;  4FKC A;  2GTX A;  4U75 A;  1JAW A;  2GU7 A;  3CTZ A;  4RZY A;  1B6A A;  2B3L A;  4U6J A;  3BIT A;  3PKA A;  4PV4 A;  5D6F A;  1C22 A;  2P99 A;  4R60 A;  5CE6 A;  1KQ0 A;  1XNZ A;  1YW8 A;  1WL9 A;  1WY2 A;  2GG2 A;  2V3Z A;  4KM3 A;  4QR8 A;  1XGN A;  2MAT A;  4U71 A;  4MAT A;  3FMR A;  2BH3 A;  4PNC A;  2BWX A;  1QXZ A;  2Q8K A;  1C23 A;  2NQ6 A;  4U6C A;  2P98 A;  1C21 A;  2GG9 A;  1M35 A;  2GG3 A;  2DFI A;  3MR1 A;  4FO7 A;  5CNX A;  3PKC A;  1QXY A;  5CDV A;  1A16 A;  3S6B A;  2Q92 A;  4U6Z A;  4A6W A;  4IKS A;  2BWV A; 
#chains in the Genus database with same CATH homology
 2V6C A;  3L7G A;  5JHU A;  2EVM A;  2Q96 A;  2IW2 A;  2GGB A;  2ZSG A;  4FLI A;  4FUK A;  2GU5 A;  5CDE A;  4EGE A;  2BHD A;  1R58 A;  1WLR A;  1R5H A;  3IU9 A;  1CHM A;  4U76 A;  1WN1 A;  2OKN A;  2GZ5 A;  4FO8 A;  4B28 A;  2BWS A;  4A6V A;  4RZZ A;  1WBQ A;  3BIQ A;  4U1B A;  2BWY A;  2EVO A;  4JUQ A;  4S2T P;  1W7V A;  1XGO A;  5E5B A;  3D27 A;  2GA2 A;  2BWW A;  4Z7M A;  1QZY A;  3IG4 A;  4S01 A;  5CIK A;  1YW7 A;  2Q94 A;  1KP0 A;  2BHB A;  3TB5 A;  1Y1N A;  2BN7 A;  1YVM A;  4IDY A;  4U73 A;  5JFR A;  4FLK A;  2ADU A;  3MX6 A;  3IU7 A;  2Q95 A;  3L24 A;  1O0X A;  4U70 A;  5D6E A;  3TAV A;  2GG0 A;  5CDL A;  3Q6D A;  4U6W A;  1W2M A;  4IF7 A;  2BHA A;  2GGC A;  4HXX A;  2B3K A;  2EA4 A;  3PKE A;  3MAT A;  4S00 A;  4S2R P;  1PV9 A;  1WKM A;  1XGM A;  1YW9 A;  3FMQ A;  4U6E A;  3ROR A;  2OAZ A;  2BWT A;  5JI6 A;  2GU4 A;  1WL6 A;  3RVA A;  2BHC A;  4RGZ 1;  2V3Y A;  3CB5 A;  4ZWP A;  1N51 A;  1BOA A;  4FLL A;  1R5G A;  4IKT A;  1BN5 A;  1B59 A;  2B3H A;  4IU6 A;  3PKD A;  2NQ7 A;  2V3X A;  5CLS A;  4IPA A;  1KQ9 A;  2P9A A;  2GG8 A;  2EA2 A;  3PKB A;  2BWU A;  5FCH A;  3CB6 A;  4ZNG A;  1YJ3 A;  3FM3 A;  4U69 A;  3BIP A;  2GU6 A;  4IKR A;  5FCF A;  4IKU A;  4ZWU A;  1MAT A;  2HOW A;  2BB7 A;  1XGS A;  2GG5 A;  4ZWO A;  2Q93 A;  2GG7 A;  4IEC A;  2G6P A;  1C24 A;  2EVC A;  3IU8 A;  4FLJ A;  4OOK A;  1QXW A;  1C27 A;  4FKC A;  2GTX A;  4U75 A;  1JAW A;  2GU7 A;  3CTZ A;  4RZY A;  1B6A A;  2B3L A;  4U6J A;  3BIT A;  3PKA A;  4PV4 A;  5D6F A;  1C22 A;  2P99 A;  4R60 A;  5CE6 A;  1KQ0 A;  1XNZ A;  1YW8 A;  1WL9 A;  1WY2 A;  2GG2 A;  2V3Z A;  4KM3 A;  4QR8 A;  1XGN A;  2MAT A;  4U71 A;  4MAT A;  3FMR A;  2BH3 A;  4PNC A;  2BWX A;  1QXZ A;  2Q8K A;  1C23 A;  2NQ6 A;  4U6C A;  2P98 A;  1C21 A;  2GG9 A;  1M35 A;  2GG3 A;  2DFI A;  3MR1 A;  4FO7 A;  5CNX A;  3PKC A;  1QXY A;  5CDV A;  1A16 A;  3S6B A;  2Q92 A;  4U6Z A;  4A6W A;  4IKS A;  2BWV A;
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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