4JUQA

Pseudomonas aeruginosa metap t2n mutant, in mn form
Total Genus 79
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
79
sequence length
258
structure length
258
Chain Sequence
NVTIKTPDDIEKMRIAGRLAAEVLEMIGEHIKPGVTTEELDRICHDYIVNEQKAIPAPLNYKGFPKSICTSINHVVCHGIPNEKPLKEGDILNVDITVIKDGYHGDTSKMFLVGKTPEWADRLCQITQECMYKGISVVRPGAHLGDIGEIIQKHAEKNGFSVVREYCGHGIGKVFHEEPQVLHYGRAGTGIELKEGMIFTIEPMINQGRPETRLLGDGWTAITKDRKLSAQWEHTVLVTADGYEILTLRNDETFPRTS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
Chord Diagram
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publication title Methionine excision captured by the structures of a methionine aminopeptidase
rcsb
molecule tags Hydrolase
source organism Pseudomonas aeruginosa
molecule keywords Methionine aminopeptidase
total genus 79
structure length 258
sequence length 258
chains with identical sequence B, C, D
ec nomenclature ec 3.4.11.18: Methionyl aminopeptidase.
pdb deposition date 2013-03-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00557 Peptidase_M24 Metallopeptidase family M24
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.230.10 Alpha Beta Alpha-Beta Complex Creatine Amidinohydrolase Creatinase/methionine aminopeptidase superfamily 4juqA00
2GU7A 3S6BA 4IPAA 3TB5A 2EVMA 3L7GA 4U73A 2GU4A 4U70A 2GZ5A 4R60A 2NQ7A 1C22A 3L24A 4U6CA 4FLIA 2ZSGA 2GG9A 1W7VA 1QZYA 3IG4A 3RORA 5D6EA 1C23A 1JAWA 1WLRA 1YW8A 4FLLA 2BHBA 1C21A 4IKSA 4IF7A 2OAZA 4FLKA 2GU6A 2P99A 2GG8A 2V3YA 3TAVA 1YJ3A 1YVMA 1XGNA 1R5HA 1CHMA 1MATA 5FCHA 1XGSA 2GG7A 4S00A 2BWYA 1BOAA 1A16A 2Q8KA 4QR8A 2ADUA 2BHCA 2MATA 2B3KA 2V6CA 3IU9A 4IECA 1XGOA 3BITA 3PKBA 2NQ6A 1WKMA 2GG5A 1YW9A 2BWVA 2OKNA 2BWWA 4U76A 4B28A 4IKRA 5JI6A 4FO8A 3RVAA 4A6VA 4U69A 4U71A 1Y1NA 1B6AA 2BWXA 5CDLA 1QXYA 4U1BA 5CE6A 2Q93A 1R58A 3PKCA 4JUQA 3PKAA 4RZZA 2EA2A 4OOKA 1R5GA 1BN5A 1QXWA 1W2MA 5JFRA 4FUKA 4IU6A 1WBQA 3D27A 4Z7MA 2BHAA 1WL6A 4RGZ1 2G6PA 2BHDA 2IW2A 4RZYA 2BN7A 4ZWOA 2GGBA 3PKEA 3MR1A 4FO7A 1QXZA 1XGMA 4MATA 2DFIA 2BWSA 4U6EA 4ZNGA 1WY2A 1PV9A 1KP0A 4PV4A 2BWTA 3IU7A 1C24A 4FKCA 4S2RP 2B3LA 2V3XA 3Q6DA 4U6WA 5CNXA 1B59A 2GG0A 1WL9A 5CLSA 1KQ0A 3FM3A 1WN1A 4FLJA 3BIPA 4A6WA 4ZWUA 4IKTA 2B3HA 2GU5A 2P98A 3MATA 3CB6A 2V3ZA 2BB7A 5D6FA 2GTXA 3MX6A 5CDVA 5E5BA 2P9AA 3BIQA 4EGEA 2GGCA 2EVOA 1N51A 1M35A 4S01A 2Q92A 4KM3A 4IKUA 5CIKA 2Q95A 4IDYA 4PNCA 5FCFA 2HOWA 3FMRA 3IU8A 5JHUA 1C27A 1YW7A 4ZWPA 3CTZA 1XNZA 5CDEA 2GG3A 2Q96A 4HXXA 1O0XA 2EVCA 3PKDA 3CB5A 2Q94A 2GG2A 4S2TP 1KQ9A 4U6ZA 2BH3A 2GA2A 2BWUA 3FMQA 4U6JA 4U75A 2EA4A
chains in the Genus database with same CATH superfamily
2GU7A 3S6BA 4IPAA 3TB5A 2EVMA 3L7GA 4U73A 2GU4A 4U70A 2GZ5A 4R60A 2NQ7A 1C22A 3L24A 4U6CA 4FLIA 2ZSGA 2GG9A 1W7VA 1QZYA 3IG4A 3RORA 5D6EA 1C23A 1JAWA 1WLRA 1YW8A 4FLLA 2BHBA 1C21A 4IKSA 4IF7A 2OAZA 4FLKA 2GU6A 2P99A 2GG8A 2V3YA 3TAVA 1YJ3A 1YVMA 1XGNA 1R5HA 1CHMA 1MATA 5FCHA 1XGSA 2GG7A 4S00A 2BWYA 1BOAA 1A16A 2Q8KA 4QR8A 2ADUA 2BHCA 2MATA 2B3KA 2V6CA 3IU9A 4IECA 1XGOA 3BITA 3PKBA 2NQ6A 1WKMA 2GG5A 1YW9A 2BWVA 2OKNA 2BWWA 4U76A 4B28A 4IKRA 5JI6A 4FO8A 3RVAA 4A6VA 4U69A 4U71A 1Y1NA 1B6AA 2BWXA 5CDLA 1QXYA 4U1BA 5CE6A 2Q93A 1R58A 3PKCA 4JUQA 3PKAA 4RZZA 2EA2A 4OOKA 1R5GA 1BN5A 1QXWA 1W2MA 5JFRA 4FUKA 4IU6A 1WBQA 3D27A 4Z7MA 2BHAA 1WL6A 4RGZ1 2G6PA 2BHDA 2IW2A 4RZYA 2BN7A 4ZWOA 2GGBA 3PKEA 3MR1A 4FO7A 1QXZA 1XGMA 4MATA 2DFIA 2BWSA 4U6EA 4ZNGA 1WY2A 1PV9A 1KP0A 4PV4A 2BWTA 3IU7A 1C24A 4FKCA 4S2RP 2B3LA 2V3XA 3Q6DA 4U6WA 5CNXA 1B59A 2GG0A 1WL9A 5CLSA 1KQ0A 3FM3A 1WN1A 4FLJA 3BIPA 4A6WA 4ZWUA 4IKTA 2B3HA 2GU5A 2P98A 3MATA 3CB6A 2V3ZA 2BB7A 5D6FA 2GTXA 3MX6A 5CDVA 5E5BA 2P9AA 3BIQA 4EGEA 2GGCA 2EVOA 1N51A 1M35A 4S01A 2Q92A 4KM3A 4IKUA 5CIKA 2Q95A 4IDYA 4PNCA 5FCFA 2HOWA 3FMRA 3IU8A 5JHUA 1C27A 1YW7A 4ZWPA 3CTZA 1XNZA 5CDEA 2GG3A 2Q96A 4HXXA 1O0XA 2EVCA 3PKDA 3CB5A 2Q94A 2GG2A 4S2TP 1KQ9A 4U6ZA 2BH3A 2GA2A 2BWUA 3FMQA 4U6JA 4U75A 2EA4A
chains in the Genus database with same CATH topology
2GU7A 3S6BA 4IPAA 3TB5A 2EVMA 3L7GA 4U73A 2GU4A 4U70A 2GZ5A 4R60A 2NQ7A 1C22A 3L24A 4U6CA 4FLIA 2ZSGA 2GG9A 1W7VA 1QZYA 3IG4A 3RORA 5D6EA 1C23A 1JAWA 1WLRA 1YW8A 4FLLA 2BHBA 1C21A 4IKSA 4IF7A 2OAZA 4FLKA 2GU6A 2P99A 2GG8A 2V3YA 3TAVA 1YJ3A 1YVMA 1XGNA 1R5HA 1CHMA 1MATA 5FCHA 1XGSA 2GG7A 4S00A 2BWYA 1BOAA 1A16A 2Q8KA 4QR8A 2ADUA 2BHCA 2MATA 2B3KA 2V6CA 3IU9A 4IECA 1XGOA 3BITA 3PKBA 2NQ6A 1WKMA 2GG5A 1YW9A 2BWVA 2OKNA 2BWWA 4U76A 4B28A 4IKRA 5JI6A 4FO8A 3RVAA 4A6VA 4U69A 4U71A 1Y1NA 1B6AA 2BWXA 5CDLA 1QXYA 4U1BA 5CE6A 2Q93A 1R58A 3PKCA 4JUQA 3PKAA 4RZZA 2EA2A 4OOKA 1R5GA 1BN5A 1QXWA 1W2MA 5JFRA 4FUKA 4IU6A 1WBQA 3D27A 4Z7MA 2BHAA 1WL6A 4RGZ1 2G6PA 2BHDA 2IW2A 4RZYA 2BN7A 4ZWOA 2GGBA 3PKEA 3MR1A 4FO7A 1QXZA 1XGMA 4MATA 2DFIA 2BWSA 4U6EA 4ZNGA 1WY2A 1PV9A 1KP0A 4PV4A 2BWTA 3IU7A 1C24A 4FKCA 4S2RP 2B3LA 2V3XA 3Q6DA 4U6WA 5CNXA 1B59A 2GG0A 1WL9A 5CLSA 1KQ0A 3FM3A 1WN1A 4FLJA 3BIPA 4A6WA 4ZWUA 4IKTA 2B3HA 2GU5A 2P98A 3MATA 3CB6A 2V3ZA 2BB7A 5D6FA 2GTXA 3MX6A 5CDVA 5E5BA 2P9AA 3BIQA 4EGEA 2GGCA 2EVOA 1N51A 1M35A 4S01A 2Q92A 4KM3A 4IKUA 5CIKA 2Q95A 4IDYA 4PNCA 5FCFA 2HOWA 3FMRA 3IU8A 5JHUA 1C27A 1YW7A 4ZWPA 3CTZA 1XNZA 5CDEA 2GG3A 2Q96A 4HXXA 1O0XA 2EVCA 3PKDA 3CB5A 2Q94A 2GG2A 4S2TP 1KQ9A 4U6ZA 2BH3A 2GA2A 2BWUA 3FMQA 4U6JA 4U75A 2EA4A
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 2GU7 A;  3S6B A;  4IPA A;  3TB5 A;  2EVM A;  3L7G A;  4U73 A;  2GU4 A;  4U70 A;  2GZ5 A;  4R60 A;  2NQ7 A;  1C22 A;  3L24 A;  4U6C A;  4FLI A;  2ZSG A;  2GG9 A;  1W7V A;  1QZY A;  3IG4 A;  3ROR A;  5D6E A;  1C23 A;  1JAW A;  1WLR A;  1YW8 A;  4FLL A;  2BHB A;  1C21 A;  4IKS A;  4IF7 A;  2OAZ A;  4FLK A;  2GU6 A;  2P99 A;  2GG8 A;  2V3Y A;  3TAV A;  1YJ3 A;  1YVM A;  1XGN A;  1R5H A;  1CHM A;  1MAT A;  5FCH A;  1XGS A;  2GG7 A;  4S00 A;  2BWY A;  1BOA A;  1A16 A;  2Q8K A;  4QR8 A;  2ADU A;  2BHC A;  2MAT A;  2B3K A;  2V6C A;  3IU9 A;  4IEC A;  1XGO A;  3BIT A;  3PKB A;  2NQ6 A;  1WKM A;  2GG5 A;  1YW9 A;  2BWV A;  2OKN A;  2BWW A;  4U76 A;  4B28 A;  4IKR A;  5JI6 A;  4FO8 A;  3RVA A;  4A6V A;  4U69 A;  4U71 A;  1Y1N A;  1B6A A;  2BWX A;  5CDL A;  1QXY A;  4U1B A;  5CE6 A;  2Q93 A;  1R58 A;  3PKC A;  4JUQ A;  3PKA A;  4RZZ A;  2EA2 A;  4OOK A;  1R5G A;  1BN5 A;  1QXW A;  1W2M A;  5JFR A;  4FUK A;  4IU6 A;  1WBQ A;  3D27 A;  4Z7M A;  2BHA A;  1WL6 A;  4RGZ 1;  2G6P A;  2BHD A;  2IW2 A;  4RZY A;  2BN7 A;  4ZWO A;  2GGB A;  3PKE A;  3MR1 A;  4FO7 A;  1QXZ A;  1XGM A;  4MAT A;  2DFI A;  2BWS A;  4U6E A;  4ZNG A;  1WY2 A;  1PV9 A;  1KP0 A;  4PV4 A;  2BWT A;  3IU7 A;  1C24 A;  4FKC A;  4S2R P;  2B3L A;  2V3X A;  3Q6D A;  4U6W A;  5CNX A;  1B59 A;  2GG0 A;  1WL9 A;  5CLS A;  1KQ0 A;  3FM3 A;  1WN1 A;  4FLJ A;  3BIP A;  4A6W A;  4ZWU A;  4IKT A;  2B3H A;  2GU5 A;  2P98 A;  3MAT A;  3CB6 A;  2V3Z A;  2BB7 A;  5D6F A;  2GTX A;  3MX6 A;  5CDV A;  5E5B A;  2P9A A;  3BIQ A;  4EGE A;  2GGC A;  2EVO A;  1N51 A;  1M35 A;  4S01 A;  2Q92 A;  4KM3 A;  4IKU A;  5CIK A;  2Q95 A;  4IDY A;  4PNC A;  5FCF A;  2HOW A;  3FMR A;  3IU8 A;  5JHU A;  1C27 A;  1YW7 A;  4ZWP A;  3CTZ A;  1XNZ A;  5CDE A;  2GG3 A;  2Q96 A;  4HXX A;  1O0X A;  2EVC A;  3PKD A;  3CB5 A;  2Q94 A;  2GG2 A;  4S2T P;  1KQ9 A;  4U6Z A;  2BH3 A;  2GA2 A;  2BWU A;  3FMQ A;  4U6J A;  4U75 A;  2EA4 A; 
#chains in the Genus database with same CATH topology
 2GU7 A;  3S6B A;  4IPA A;  3TB5 A;  2EVM A;  3L7G A;  4U73 A;  2GU4 A;  4U70 A;  2GZ5 A;  4R60 A;  2NQ7 A;  1C22 A;  3L24 A;  4U6C A;  4FLI A;  2ZSG A;  2GG9 A;  1W7V A;  1QZY A;  3IG4 A;  3ROR A;  5D6E A;  1C23 A;  1JAW A;  1WLR A;  1YW8 A;  4FLL A;  2BHB A;  1C21 A;  4IKS A;  4IF7 A;  2OAZ A;  4FLK A;  2GU6 A;  2P99 A;  2GG8 A;  2V3Y A;  3TAV A;  1YJ3 A;  1YVM A;  1XGN A;  1R5H A;  1CHM A;  1MAT A;  5FCH A;  1XGS A;  2GG7 A;  4S00 A;  2BWY A;  1BOA A;  1A16 A;  2Q8K A;  4QR8 A;  2ADU A;  2BHC A;  2MAT A;  2B3K A;  2V6C A;  3IU9 A;  4IEC A;  1XGO A;  3BIT A;  3PKB A;  2NQ6 A;  1WKM A;  2GG5 A;  1YW9 A;  2BWV A;  2OKN A;  2BWW A;  4U76 A;  4B28 A;  4IKR A;  5JI6 A;  4FO8 A;  3RVA A;  4A6V A;  4U69 A;  4U71 A;  1Y1N A;  1B6A A;  2BWX A;  5CDL A;  1QXY A;  4U1B A;  5CE6 A;  2Q93 A;  1R58 A;  3PKC A;  4JUQ A;  3PKA A;  4RZZ A;  2EA2 A;  4OOK A;  1R5G A;  1BN5 A;  1QXW A;  1W2M A;  5JFR A;  4FUK A;  4IU6 A;  1WBQ A;  3D27 A;  4Z7M A;  2BHA A;  1WL6 A;  4RGZ 1;  2G6P A;  2BHD A;  2IW2 A;  4RZY A;  2BN7 A;  4ZWO A;  2GGB A;  3PKE A;  3MR1 A;  4FO7 A;  1QXZ A;  1XGM A;  4MAT A;  2DFI A;  2BWS A;  4U6E A;  4ZNG A;  1WY2 A;  1PV9 A;  1KP0 A;  4PV4 A;  2BWT A;  3IU7 A;  1C24 A;  4FKC A;  4S2R P;  2B3L A;  2V3X A;  3Q6D A;  4U6W A;  5CNX A;  1B59 A;  2GG0 A;  1WL9 A;  5CLS A;  1KQ0 A;  3FM3 A;  1WN1 A;  4FLJ A;  3BIP A;  4A6W A;  4ZWU A;  4IKT A;  2B3H A;  2GU5 A;  2P98 A;  3MAT A;  3CB6 A;  2V3Z A;  2BB7 A;  5D6F A;  2GTX A;  3MX6 A;  5CDV A;  5E5B A;  2P9A A;  3BIQ A;  4EGE A;  2GGC A;  2EVO A;  1N51 A;  1M35 A;  4S01 A;  2Q92 A;  4KM3 A;  4IKU A;  5CIK A;  2Q95 A;  4IDY A;  4PNC A;  5FCF A;  2HOW A;  3FMR A;  3IU8 A;  5JHU A;  1C27 A;  1YW7 A;  4ZWP A;  3CTZ A;  1XNZ A;  5CDE A;  2GG3 A;  2Q96 A;  4HXX A;  1O0X A;  2EVC A;  3PKD A;  3CB5 A;  2Q94 A;  2GG2 A;  4S2T P;  1KQ9 A;  4U6Z A;  2BH3 A;  2GA2 A;  2BWU A;  3FMQ A;  4U6J A;  4U75 A;  2EA4 A; 
#chains in the Genus database with same CATH homology
 2GU7 A;  3S6B A;  4IPA A;  3TB5 A;  2EVM A;  3L7G A;  4U73 A;  2GU4 A;  4U70 A;  2GZ5 A;  4R60 A;  2NQ7 A;  1C22 A;  3L24 A;  4U6C A;  4FLI A;  2ZSG A;  2GG9 A;  1W7V A;  1QZY A;  3IG4 A;  3ROR A;  5D6E A;  1C23 A;  1JAW A;  1WLR A;  1YW8 A;  4FLL A;  2BHB A;  1C21 A;  4IKS A;  4IF7 A;  2OAZ A;  4FLK A;  2GU6 A;  2P99 A;  2GG8 A;  2V3Y A;  3TAV A;  1YJ3 A;  1YVM A;  1XGN A;  1R5H A;  1CHM A;  1MAT A;  5FCH A;  1XGS A;  2GG7 A;  4S00 A;  2BWY A;  1BOA A;  1A16 A;  2Q8K A;  4QR8 A;  2ADU A;  2BHC A;  2MAT A;  2B3K A;  2V6C A;  3IU9 A;  4IEC A;  1XGO A;  3BIT A;  3PKB A;  2NQ6 A;  1WKM A;  2GG5 A;  1YW9 A;  2BWV A;  2OKN A;  2BWW A;  4U76 A;  4B28 A;  4IKR A;  5JI6 A;  4FO8 A;  3RVA A;  4A6V A;  4U69 A;  4U71 A;  1Y1N A;  1B6A A;  2BWX A;  5CDL A;  1QXY A;  4U1B A;  5CE6 A;  2Q93 A;  1R58 A;  3PKC A;  4JUQ A;  3PKA A;  4RZZ A;  2EA2 A;  4OOK A;  1R5G A;  1BN5 A;  1QXW A;  1W2M A;  5JFR A;  4FUK A;  4IU6 A;  1WBQ A;  3D27 A;  4Z7M A;  2BHA A;  1WL6 A;  4RGZ 1;  2G6P A;  2BHD A;  2IW2 A;  4RZY A;  2BN7 A;  4ZWO A;  2GGB A;  3PKE A;  3MR1 A;  4FO7 A;  1QXZ A;  1XGM A;  4MAT A;  2DFI A;  2BWS A;  4U6E A;  4ZNG A;  1WY2 A;  1PV9 A;  1KP0 A;  4PV4 A;  2BWT A;  3IU7 A;  1C24 A;  4FKC A;  4S2R P;  2B3L A;  2V3X A;  3Q6D A;  4U6W A;  5CNX A;  1B59 A;  2GG0 A;  1WL9 A;  5CLS A;  1KQ0 A;  3FM3 A;  1WN1 A;  4FLJ A;  3BIP A;  4A6W A;  4ZWU A;  4IKT A;  2B3H A;  2GU5 A;  2P98 A;  3MAT A;  3CB6 A;  2V3Z A;  2BB7 A;  5D6F A;  2GTX A;  3MX6 A;  5CDV A;  5E5B A;  2P9A A;  3BIQ A;  4EGE A;  2GGC A;  2EVO A;  1N51 A;  1M35 A;  4S01 A;  2Q92 A;  4KM3 A;  4IKU A;  5CIK A;  2Q95 A;  4IDY A;  4PNC A;  5FCF A;  2HOW A;  3FMR A;  3IU8 A;  5JHU A;  1C27 A;  1YW7 A;  4ZWP A;  3CTZ A;  1XNZ A;  5CDE A;  2GG3 A;  2Q96 A;  4HXX A;  1O0X A;  2EVC A;  3PKD A;  3CB5 A;  2Q94 A;  2GG2 A;  4S2T P;  1KQ9 A;  4U6Z A;  2BH3 A;  2GA2 A;  2BWU A;  3FMQ A;  4U6J A;  4U75 A;  2EA4 A;
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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