4JUQA

Pseudomonas aeruginosa metap t2n mutant, in mn form
Total Genus 79

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
79
sequence length
258
structure length
258
Chain Sequence
NVTIKTPDDIEKMRIAGRLAAEVLEMIGEHIKPGVTTEELDRICHDYIVNEQKAIPAPLNYKGFPKSICTSINHVVCHGIPNEKPLKEGDILNVDITVIKDGYHGDTSKMFLVGKTPEWADRLCQITQECMYKGISVVRPGAHLGDIGEIIQKHAEKNGFSVVREYCGHGIGKVFHEEPQVLHYGRAGTGIELKEGMIFTIEPMINQGRPETRLLGDGWTAITKDRKLSAQWEHTVLVTADGYEILTLRNDETFPRTS

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYS10 (169-171)TII7 (195-198)AH1 (8-28)TIV1 (100-103)S19 (244-246)AH2 (38-53)TI7 (250-253)3H1 (29-31)TII1 (33-36)S1 (36-37)S6 (91-101)S2 (56-57)TI1 (57-60)TII2 (59-62)TII3 (61-64)TVIII1 (173-176)S3 (69-73)TII'1 (73-76)TII4 (88-91)S16 (222-224)S5 (86-87)TIV2 (114-117)S17 (230-232)S7 (104-114)TIV3 (172-175)S18 (235-239)AH3 (119-138)TII5 (140-143)S8 (143-144)S9 (162-163)TI2 (164-167)S11 (178-182)TVIII2 (175-178)TII6 (187-190)S12 (193-194)S13 (198-202)S14 (205-207)TIV4 (207-210)TI4 (224-227)S15 (213-215)TI3 (216-219)TIV5 (218-221)TI6 (246-249)TI5 (240-243)S4 (76-78)AH4 (145-159)Updating...
connected with : NaN
molecule tags Hydrolase
source organism Pseudomonas aeruginosa
publication title Methionine excision captured by the structures of a methionine aminopeptidase
rcsb
molecule keywords Methionine aminopeptidase
total genus 79
structure length 258
sequence length 258
chains with identical sequence B, C, D
ec nomenclature ec 3.4.11.18: Methionyl aminopeptidase.
pdb deposition date 2013-03-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00557 Peptidase_M24 Metallopeptidase family M24
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.230.10 Alpha Beta Alpha-Beta Complex Creatine Amidinohydrolase Creatinase/methionine aminopeptidase superfamily 4juqA00
4S01A 3S6BA 3RVAA 2B3KA 4IDYA 4A6VA 1XGMA 4U6JA 4RZYA 1C21A 4U1BA 3BIPA 4ZWPA 4FKCA 4IPAA 5JI6A 3RORA 1BN5A 4U76A 4ZWOA 2GG9A 1XGSA 5CLSA 3L7GA 5CIKA 3PKBA 4B28A 3FMQA 4FO7A 4EGEA 3FM3A 3IU8A 1QZYA 4FLJA 4IKSA 2GU6A 2EA2A 3MX6A 1Y1NA 3TB5A 3IG4A 2GU4A 3PKCA 3BITA 1WN1A 4IKUA 1B6AA 2B3LA 2BWSA 2BWYA 4U6CA 2Q92A 2GZ5A 1WL9A 2GA2A 3D27A 1XGNA 4A6WA 1C23A 1JAWA 2V3ZA 1MATA 2GG5A 3MATA 4U6WA 4PNCA 2Q8KA 1QXWA 1C27A 2GU5A 4HXXA 4ZWUA 3CB6A 1KQ9A 2GGCA 2P98A 4IKRA 2B3HA 2EVCA 5JHUA 4FLLA 1N51A 1QXZA 2MATA 2Q93A 4U70A 1YW8A 4PV4A 1W2MA 2NQ7A 3FMRA 3PKEA 2GG3A 2BHBA 4S2RP 2GG2A 4RGZ1 1B59A 2GU7A 1A16A 4U69A 2BHDA 2HOWA 2BB7A 2BWWA 1C22A 4U71A 1XNZA 2P9AA 1R5HA 2V3XA 1YVMA 5D6EA 2P99A 4FLKA 4U6EA 1O0XA 1W7VA 1C24A 3IU9A 1QXYA 4IF7A 2BWTA 3L24A 2GGBA 2V3YA 5CDLA 2GTXA 4FO8A 2GG8A 1WLRA 3CB5A 3PKAA 3TAVA 4IECA 3IU7A 2Q95A 1BOAA 2OKNA 2EVOA 3BIQA 2BHAA 3CTZA 5E5BA 2GG0A 4U75A 2BWXA 1R5GA 2G6PA 4MATA 2Q96A 4QR8A 4U73A 1YJ3A 4KM3A 1YW9A 2BN7A 3PKDA 2GG7A 4FUKA 4OOKA 2ZSGA 4R60A 5FCFA 1WL6A 2V6CA 1WKMA 2NQ6A 5CDEA 4IU6A 5CDVA 3MR1A 2BH3A 2BWVA 4JUQA 4ZNGA 4FLIA 3Q6DA 1PV9A 1KP0A 2BHCA 1M35A 1KQ0A 2OAZA 5FCHA 1CHMA 4S00A 4U6ZA 2ADUA 1WY2A 5JFRA 2BWUA 4IKTA 1R58A 4Z7MA 4RZZA 5CE6A 2DFIA 2Q94A 5D6FA 2IW2A 1YW7A 2EVMA 5CNXA 1XGOA 2EA4A 1WBQA 4S2TP
chains in the Genus database with same CATH superfamily
4S01A 3S6BA 3RVAA 2B3KA 4IDYA 4A6VA 1XGMA 4U6JA 4RZYA 1C21A 4U1BA 3BIPA 4ZWPA 4FKCA 4IPAA 5JI6A 3RORA 1BN5A 4U76A 4ZWOA 2GG9A 1XGSA 5CLSA 3L7GA 5CIKA 3PKBA 4B28A 3FMQA 4FO7A 4EGEA 3FM3A 3IU8A 1QZYA 4FLJA 4IKSA 2GU6A 2EA2A 3MX6A 1Y1NA 3TB5A 3IG4A 2GU4A 3PKCA 3BITA 1WN1A 4IKUA 1B6AA 2B3LA 2BWSA 2BWYA 4U6CA 2Q92A 2GZ5A 1WL9A 2GA2A 3D27A 1XGNA 4A6WA 1C23A 1JAWA 2V3ZA 1MATA 2GG5A 3MATA 4U6WA 4PNCA 2Q8KA 1QXWA 1C27A 2GU5A 4HXXA 4ZWUA 3CB6A 1KQ9A 2GGCA 2P98A 4IKRA 2B3HA 2EVCA 5JHUA 4FLLA 1N51A 1QXZA 2MATA 2Q93A 4U70A 1YW8A 4PV4A 1W2MA 2NQ7A 3FMRA 3PKEA 2GG3A 2BHBA 4S2RP 2GG2A 4RGZ1 1B59A 2GU7A 1A16A 4U69A 2BHDA 2HOWA 2BB7A 2BWWA 1C22A 4U71A 1XNZA 2P9AA 1R5HA 2V3XA 1YVMA 5D6EA 2P99A 4FLKA 4U6EA 1O0XA 1W7VA 1C24A 3IU9A 1QXYA 4IF7A 2BWTA 3L24A 2GGBA 2V3YA 5CDLA 2GTXA 4FO8A 2GG8A 1WLRA 3CB5A 3PKAA 3TAVA 4IECA 3IU7A 2Q95A 1BOAA 2OKNA 2EVOA 3BIQA 2BHAA 3CTZA 5E5BA 2GG0A 4U75A 2BWXA 1R5GA 2G6PA 4MATA 2Q96A 4QR8A 4U73A 1YJ3A 4KM3A 1YW9A 2BN7A 3PKDA 2GG7A 4FUKA 4OOKA 2ZSGA 4R60A 5FCFA 1WL6A 2V6CA 1WKMA 2NQ6A 5CDEA 4IU6A 5CDVA 3MR1A 2BH3A 2BWVA 4JUQA 4ZNGA 4FLIA 3Q6DA 1PV9A 1KP0A 2BHCA 1M35A 1KQ0A 2OAZA 5FCHA 1CHMA 4S00A 4U6ZA 2ADUA 1WY2A 5JFRA 2BWUA 4IKTA 1R58A 4Z7MA 4RZZA 5CE6A 2DFIA 2Q94A 5D6FA 2IW2A 1YW7A 2EVMA 5CNXA 1XGOA 2EA4A 1WBQA 4S2TP
chains in the Genus database with same CATH topology
4S01A 3S6BA 3RVAA 2B3KA 4IDYA 4A6VA 1XGMA 4U6JA 4RZYA 1C21A 4U1BA 3BIPA 4ZWPA 4FKCA 4IPAA 5JI6A 3RORA 1BN5A 4U76A 4ZWOA 2GG9A 1XGSA 5CLSA 3L7GA 5CIKA 3PKBA 4B28A 3FMQA 4FO7A 4EGEA 3FM3A 3IU8A 1QZYA 4FLJA 4IKSA 2GU6A 2EA2A 3MX6A 1Y1NA 3TB5A 3IG4A 2GU4A 3PKCA 3BITA 1WN1A 4IKUA 1B6AA 2B3LA 2BWSA 2BWYA 4U6CA 2Q92A 2GZ5A 1WL9A 2GA2A 3D27A 1XGNA 4A6WA 1C23A 1JAWA 2V3ZA 1MATA 2GG5A 3MATA 4U6WA 4PNCA 2Q8KA 1QXWA 1C27A 2GU5A 4HXXA 4ZWUA 3CB6A 1KQ9A 2GGCA 2P98A 4IKRA 2B3HA 2EVCA 5JHUA 4FLLA 1N51A 1QXZA 2MATA 2Q93A 4U70A 1YW8A 4PV4A 1W2MA 2NQ7A 3FMRA 3PKEA 2GG3A 2BHBA 4S2RP 2GG2A 4RGZ1 1B59A 2GU7A 1A16A 4U69A 2BHDA 2HOWA 2BB7A 2BWWA 1C22A 4U71A 1XNZA 2P9AA 1R5HA 2V3XA 1YVMA 5D6EA 2P99A 4FLKA 4U6EA 1O0XA 1W7VA 1C24A 3IU9A 1QXYA 4IF7A 2BWTA 3L24A 2GGBA 2V3YA 5CDLA 2GTXA 4FO8A 2GG8A 1WLRA 3CB5A 3PKAA 3TAVA 4IECA 3IU7A 2Q95A 1BOAA 2OKNA 2EVOA 3BIQA 2BHAA 3CTZA 5E5BA 2GG0A 4U75A 2BWXA 1R5GA 2G6PA 4MATA 2Q96A 4QR8A 4U73A 1YJ3A 4KM3A 1YW9A 2BN7A 3PKDA 2GG7A 4FUKA 4OOKA 2ZSGA 4R60A 5FCFA 1WL6A 2V6CA 1WKMA 2NQ6A 5CDEA 4IU6A 5CDVA 3MR1A 2BH3A 2BWVA 4JUQA 4ZNGA 4FLIA 3Q6DA 1PV9A 1KP0A 2BHCA 1M35A 1KQ0A 2OAZA 5FCHA 1CHMA 4S00A 4U6ZA 2ADUA 1WY2A 5JFRA 2BWUA 4IKTA 1R58A 4Z7MA 4RZZA 5CE6A 2DFIA 2Q94A 5D6FA 2IW2A 1YW7A 2EVMA 5CNXA 1XGOA 2EA4A 1WBQA 4S2TP
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4S01 A;  3S6B A;  3RVA A;  2B3K A;  4IDY A;  4A6V A;  1XGM A;  4U6J A;  4RZY A;  1C21 A;  4U1B A;  3BIP A;  4ZWP A;  4FKC A;  4IPA A;  5JI6 A;  3ROR A;  1BN5 A;  4U76 A;  4ZWO A;  2GG9 A;  1XGS A;  5CLS A;  3L7G A;  5CIK A;  3PKB A;  4B28 A;  3FMQ A;  4FO7 A;  4EGE A;  3FM3 A;  3IU8 A;  1QZY A;  4FLJ A;  4IKS A;  2GU6 A;  2EA2 A;  3MX6 A;  1Y1N A;  3TB5 A;  3IG4 A;  2GU4 A;  3PKC A;  3BIT A;  1WN1 A;  4IKU A;  1B6A A;  2B3L A;  2BWS A;  2BWY A;  4U6C A;  2Q92 A;  2GZ5 A;  1WL9 A;  2GA2 A;  3D27 A;  1XGN A;  4A6W A;  1C23 A;  1JAW A;  2V3Z A;  1MAT A;  2GG5 A;  3MAT A;  4U6W A;  4PNC A;  2Q8K A;  1QXW A;  1C27 A;  2GU5 A;  4HXX A;  4ZWU A;  3CB6 A;  1KQ9 A;  2GGC A;  2P98 A;  4IKR A;  2B3H A;  2EVC A;  5JHU A;  4FLL A;  1N51 A;  1QXZ A;  2MAT A;  2Q93 A;  4U70 A;  1YW8 A;  4PV4 A;  1W2M A;  2NQ7 A;  3FMR A;  3PKE A;  2GG3 A;  2BHB A;  4S2R P;  2GG2 A;  4RGZ 1;  1B59 A;  2GU7 A;  1A16 A;  4U69 A;  2BHD A;  2HOW A;  2BB7 A;  2BWW A;  1C22 A;  4U71 A;  1XNZ A;  2P9A A;  1R5H A;  2V3X A;  1YVM A;  5D6E A;  2P99 A;  4FLK A;  4U6E A;  1O0X A;  1W7V A;  1C24 A;  3IU9 A;  1QXY A;  4IF7 A;  2BWT A;  3L24 A;  2GGB A;  2V3Y A;  5CDL A;  2GTX A;  4FO8 A;  2GG8 A;  1WLR A;  3CB5 A;  3PKA A;  3TAV A;  4IEC A;  3IU7 A;  2Q95 A;  1BOA A;  2OKN A;  2EVO A;  3BIQ A;  2BHA A;  3CTZ A;  5E5B A;  2GG0 A;  4U75 A;  2BWX A;  1R5G A;  2G6P A;  4MAT A;  2Q96 A;  4QR8 A;  4U73 A;  1YJ3 A;  4KM3 A;  1YW9 A;  2BN7 A;  3PKD A;  2GG7 A;  4FUK A;  4OOK A;  2ZSG A;  4R60 A;  5FCF A;  1WL6 A;  2V6C A;  1WKM A;  2NQ6 A;  5CDE A;  4IU6 A;  5CDV A;  3MR1 A;  2BH3 A;  2BWV A;  4JUQ A;  4ZNG A;  4FLI A;  3Q6D A;  1PV9 A;  1KP0 A;  2BHC A;  1M35 A;  1KQ0 A;  2OAZ A;  5FCH A;  1CHM A;  4S00 A;  4U6Z A;  2ADU A;  1WY2 A;  5JFR A;  2BWU A;  4IKT A;  1R58 A;  4Z7M A;  4RZZ A;  5CE6 A;  2DFI A;  2Q94 A;  5D6F A;  2IW2 A;  1YW7 A;  2EVM A;  5CNX A;  1XGO A;  2EA4 A;  1WBQ A;  4S2T P; 
#chains in the Genus database with same CATH topology
 4S01 A;  3S6B A;  3RVA A;  2B3K A;  4IDY A;  4A6V A;  1XGM A;  4U6J A;  4RZY A;  1C21 A;  4U1B A;  3BIP A;  4ZWP A;  4FKC A;  4IPA A;  5JI6 A;  3ROR A;  1BN5 A;  4U76 A;  4ZWO A;  2GG9 A;  1XGS A;  5CLS A;  3L7G A;  5CIK A;  3PKB A;  4B28 A;  3FMQ A;  4FO7 A;  4EGE A;  3FM3 A;  3IU8 A;  1QZY A;  4FLJ A;  4IKS A;  2GU6 A;  2EA2 A;  3MX6 A;  1Y1N A;  3TB5 A;  3IG4 A;  2GU4 A;  3PKC A;  3BIT A;  1WN1 A;  4IKU A;  1B6A A;  2B3L A;  2BWS A;  2BWY A;  4U6C A;  2Q92 A;  2GZ5 A;  1WL9 A;  2GA2 A;  3D27 A;  1XGN A;  4A6W A;  1C23 A;  1JAW A;  2V3Z A;  1MAT A;  2GG5 A;  3MAT A;  4U6W A;  4PNC A;  2Q8K A;  1QXW A;  1C27 A;  2GU5 A;  4HXX A;  4ZWU A;  3CB6 A;  1KQ9 A;  2GGC A;  2P98 A;  4IKR A;  2B3H A;  2EVC A;  5JHU A;  4FLL A;  1N51 A;  1QXZ A;  2MAT A;  2Q93 A;  4U70 A;  1YW8 A;  4PV4 A;  1W2M A;  2NQ7 A;  3FMR A;  3PKE A;  2GG3 A;  2BHB A;  4S2R P;  2GG2 A;  4RGZ 1;  1B59 A;  2GU7 A;  1A16 A;  4U69 A;  2BHD A;  2HOW A;  2BB7 A;  2BWW A;  1C22 A;  4U71 A;  1XNZ A;  2P9A A;  1R5H A;  2V3X A;  1YVM A;  5D6E A;  2P99 A;  4FLK A;  4U6E A;  1O0X A;  1W7V A;  1C24 A;  3IU9 A;  1QXY A;  4IF7 A;  2BWT A;  3L24 A;  2GGB A;  2V3Y A;  5CDL A;  2GTX A;  4FO8 A;  2GG8 A;  1WLR A;  3CB5 A;  3PKA A;  3TAV A;  4IEC A;  3IU7 A;  2Q95 A;  1BOA A;  2OKN A;  2EVO A;  3BIQ A;  2BHA A;  3CTZ A;  5E5B A;  2GG0 A;  4U75 A;  2BWX A;  1R5G A;  2G6P A;  4MAT A;  2Q96 A;  4QR8 A;  4U73 A;  1YJ3 A;  4KM3 A;  1YW9 A;  2BN7 A;  3PKD A;  2GG7 A;  4FUK A;  4OOK A;  2ZSG A;  4R60 A;  5FCF A;  1WL6 A;  2V6C A;  1WKM A;  2NQ6 A;  5CDE A;  4IU6 A;  5CDV A;  3MR1 A;  2BH3 A;  2BWV A;  4JUQ A;  4ZNG A;  4FLI A;  3Q6D A;  1PV9 A;  1KP0 A;  2BHC A;  1M35 A;  1KQ0 A;  2OAZ A;  5FCH A;  1CHM A;  4S00 A;  4U6Z A;  2ADU A;  1WY2 A;  5JFR A;  2BWU A;  4IKT A;  1R58 A;  4Z7M A;  4RZZ A;  5CE6 A;  2DFI A;  2Q94 A;  5D6F A;  2IW2 A;  1YW7 A;  2EVM A;  5CNX A;  1XGO A;  2EA4 A;  1WBQ A;  4S2T P; 
#chains in the Genus database with same CATH homology
 4S01 A;  3S6B A;  3RVA A;  2B3K A;  4IDY A;  4A6V A;  1XGM A;  4U6J A;  4RZY A;  1C21 A;  4U1B A;  3BIP A;  4ZWP A;  4FKC A;  4IPA A;  5JI6 A;  3ROR A;  1BN5 A;  4U76 A;  4ZWO A;  2GG9 A;  1XGS A;  5CLS A;  3L7G A;  5CIK A;  3PKB A;  4B28 A;  3FMQ A;  4FO7 A;  4EGE A;  3FM3 A;  3IU8 A;  1QZY A;  4FLJ A;  4IKS A;  2GU6 A;  2EA2 A;  3MX6 A;  1Y1N A;  3TB5 A;  3IG4 A;  2GU4 A;  3PKC A;  3BIT A;  1WN1 A;  4IKU A;  1B6A A;  2B3L A;  2BWS A;  2BWY A;  4U6C A;  2Q92 A;  2GZ5 A;  1WL9 A;  2GA2 A;  3D27 A;  1XGN A;  4A6W A;  1C23 A;  1JAW A;  2V3Z A;  1MAT A;  2GG5 A;  3MAT A;  4U6W A;  4PNC A;  2Q8K A;  1QXW A;  1C27 A;  2GU5 A;  4HXX A;  4ZWU A;  3CB6 A;  1KQ9 A;  2GGC A;  2P98 A;  4IKR A;  2B3H A;  2EVC A;  5JHU A;  4FLL A;  1N51 A;  1QXZ A;  2MAT A;  2Q93 A;  4U70 A;  1YW8 A;  4PV4 A;  1W2M A;  2NQ7 A;  3FMR A;  3PKE A;  2GG3 A;  2BHB A;  4S2R P;  2GG2 A;  4RGZ 1;  1B59 A;  2GU7 A;  1A16 A;  4U69 A;  2BHD A;  2HOW A;  2BB7 A;  2BWW A;  1C22 A;  4U71 A;  1XNZ A;  2P9A A;  1R5H A;  2V3X A;  1YVM A;  5D6E A;  2P99 A;  4FLK A;  4U6E A;  1O0X A;  1W7V A;  1C24 A;  3IU9 A;  1QXY A;  4IF7 A;  2BWT A;  3L24 A;  2GGB A;  2V3Y A;  5CDL A;  2GTX A;  4FO8 A;  2GG8 A;  1WLR A;  3CB5 A;  3PKA A;  3TAV A;  4IEC A;  3IU7 A;  2Q95 A;  1BOA A;  2OKN A;  2EVO A;  3BIQ A;  2BHA A;  3CTZ A;  5E5B A;  2GG0 A;  4U75 A;  2BWX A;  1R5G A;  2G6P A;  4MAT A;  2Q96 A;  4QR8 A;  4U73 A;  1YJ3 A;  4KM3 A;  1YW9 A;  2BN7 A;  3PKD A;  2GG7 A;  4FUK A;  4OOK A;  2ZSG A;  4R60 A;  5FCF A;  1WL6 A;  2V6C A;  1WKM A;  2NQ6 A;  5CDE A;  4IU6 A;  5CDV A;  3MR1 A;  2BH3 A;  2BWV A;  4JUQ A;  4ZNG A;  4FLI A;  3Q6D A;  1PV9 A;  1KP0 A;  2BHC A;  1M35 A;  1KQ0 A;  2OAZ A;  5FCH A;  1CHM A;  4S00 A;  4U6Z A;  2ADU A;  1WY2 A;  5JFR A;  2BWU A;  4IKT A;  1R58 A;  4Z7M A;  4RZZ A;  5CE6 A;  2DFI A;  2Q94 A;  5D6F A;  2IW2 A;  1YW7 A;  2EVM A;  5CNX A;  1XGO A;  2EA4 A;  1WBQ A;  4S2T P; 
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