1I4TA

Crystal structure analysis of rac1-gmppnp in complex with arfaptin
Total Genus 83
2040608010012014016001020304050607080
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
83
sequence length
195
structure length
180
Chain Sequence
SRTVDLELELQIELLRETKRKYESVLQLGRALTAHLYSLLQTQHALGDAFADLSQKSPELQEEFGYNAETQKLLCKNGETLLGAVNFFVSSINTLVTKTMEDTLMTVKQYEAARLEYDAYRTDLEELSLGPRDAGRDKYEKLRGDVAIKLKFLEENKIKVMHKQLLLFHNAVSAYFAGNQ

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH1 (28-78)AH2 (83-150)TIV2 (151-154)3H1 (80-82)EMPTYAH3 (173-215)TIV1 (150-153)Updating...
connected with : NaN
molecule tags Signaling protein
source organism Homo sapiens
publication title The structural basis of Arfaptin-mediated cross-talk between Rac and Arf signalling pathways.
pubmed doi rcsb
molecule keywords ARFAPTIN 2
total genus 83
structure length 180
sequence length 195
chains with identical sequence B
ec nomenclature
pdb deposition date 2001-02-23
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1270.60 Mainly Alpha Up-down Bundle Substrate Binding Domain Of Dnak; Chain:A; Domain 2 Arfaptin homology (AH) domain/BAR domain 1i4tA00
2Z0VA 3HAIA 4WPCA 2ELBA 4H8SA 4WPEA 3CAZA 2RAJA 4ATMA 3I2WA 3M3WA 1X03A 2Z0OA 4NSWA 1I4DA 3SOGA 3ABHA 3HAHA 3G9GA 2RAKA 5C5BA 3ACOA 3Q84A 1I49A 2X3WA 5C5BB 1I4TA 3HAJA 3SYVA 4FZSA 2Q12A 1WDZA 3QE6A 3LLLA 4AKVA 2EFLA 3DYTA 3QWEA 4AVMA 1Y2OA 2FICA 1X04A 2YKTA 2V0OA 2EFKA 3QNIA 3PLTA 1ZWWA 4I1QA 1I4LA 2C08A 2Q13A 2RAIA 2X3VA 2Z0NA 4DCNC 2X3XA 1URUA 4DYLA 3OK8A 4NQIA 2D1LA 4BNEA 2D4CA 3Q0KA
chains in the Genus database with same CATH superfamily
4G6QA 3T49A 4AZ5A 1QWUA 1I49A 3QNJA 2LXYA 4AZCB 2F7PA 2WINM 4FZOA 3BVVA 1HTYA 4IWOA 3T47A 4I1QA 1GN9A 4JNEA 4E3CA 3BLBA 2YLAA 4H6IA 4B9QA 2GAFD 4EZPA 3CKDA 3DX0A 4M0MA 3I2WA 2Z0OA 3DPQA 3ER8C 2YIVX 3T4AG 5C5BB 3UITA 1MJGA 2F7OA 2FICA 3ER9B 3KAVA 2V0OA 2YIAA 3BVWA 3VEAA 3B51X 4EZXA 4UDYX 1TQTA 2OW7A 3EJUA 3B53X 3D4YA 2WYHA 4JNFA 1E1DA 4H8SA 2RAJA 1X03A 2YIBA 3I04A 3VEBA 4D8JA 2JNSA 1WDZA 3T48A 3KAWA 4AZIA 3L3PA 4IM0A 2Q13A 1OA1A 3D4ZA 3F7WA 4JWDA 3OK8A 2D4CA 2X5CA 4HYBA 2Z0VA 4ATMA 2OBMA 3ERCC 2F7RA 4FZSA 3KDRA 3DYTA 3OHXM 4EZZA 3BUDA 1I4LA 1LQ7A 4JN4A 3DDFA 4WPEA 3DX2A 3HAHA 3ACOA 1HWWA 2MI7A 3EJRA 4EZNA 3LVTA 4R5GA 4EZWA 2WYIA 1Y2OA 4IM3A 4R5KA 4JWCA 1DKZA 2RT6A 2QFFA 3LMFA 4DYLA 3BVXA 5FLEX 2F1BA 3SOGA 4KIKA 3HAJA 4HR1A 4AVMA 2C08A 2YL5A 3I01A 1ZYLA 3EJTA 1W9MA 2OBLA 3BUQA 3SYVA 4EZOA 2PY6A 2KHOA 4AKVA 3DPOA 2QXLA 1X04A 1E9VA 1HXKA 3O3NB 2YL6A 3DDGA 4F00A 3GI7A 4IWPA 1E2UA 4EZUA 1U00A 2LM0A 3DX3A 2RAKA 2ND1A 3O3OB 3LLLA 1UPXA 3BVUA 3CV5A 1SU8A 3PLTA 5E84A 2OO2A 1TQVA 4DCNC 1URUA 3EJPA 4R5IA 2D1LA 3Q0KA 3D2EA 3HAIA 4EZYA 1TQWA 3Q84A 1I4TA 2YI8A 3D52A 2F7QA 3QE6A 3QWEA 2YKTA 2JNKA 4EZRA 2YL9A 3BVTA 2EX3B 2EWFA 2YLLA 4JWEA 4PO2A 4F01A 4KIKB 4HR1B 3QNIA 2F18A 4EZQA 2X3VA 2Z0NA 3DX1A 4FM3A 3L3OM 3A98A 4E81A 3RPMA 4JL9A 3D51A 1GNTA 1O7DB 2EFKA 2Z8YA 3CVRA 4IWQA 3BUPA 4EZSA 3CAZA 4JWIA 3D2FA 3ABHA 1YWMA 4IW0A 5KBPA 2YL8A 4AZ6A 2EFLA 1QX1A 4EZVA 4UDXX 4AZBA 3D50A 4AZGA 4NQIA 2N3KA 3CZSA 3EJQA 4NSWA 1O7DC 1R5EA 2NCZA 4AZCA 3RV1A 3DX4A 4IM2A 4R5LA 2GA9D 2YI9A 2F1AA 4H6HA 3BUIA 1ZWWA 3CZNA 3O3MB 3T46A 1JQKA 1OA0A 4EZTA 4BNEA 3BUBA 1PS3A 3ZEDA 1TQUA 2FYVA 5C5BA 4NPHA 3C7NA 2GF4A 4FZPA 4HY9A 1R34A 3OWGA 1DKYA 2PMRA 4AZ7A 2RAIA 1R33A 2X3XA 1QWNA 5FIGA 2QKWA 1DKXA 3FD9A 3M3WA 2OW6A 1I4DA 1OAOA 3G9GA 3QA8A 2O0I1 3EJSA 2ALWA 2OZNB 3DPPA 1GNLA 4WPCA 2ELBA 2ND0A 3B52X 1SU6A 2X3WA 2Q12A 1TQSA 1SU7A 3I39X 3VKHA 4AZHA 4R5JA 1SUFA 2ZXQA 5TKYA 3RV0A 4JLCA
chains in the Genus database with same CATH topology
2Z0VA 3HAIA 4WPCA 2ELBA 4H8SA 4WPEA 3CAZA 2RAJA 4ATMA 3I2WA 3M3WA 1X03A 2Z0OA 4NSWA 1I4DA 3SOGA 3ABHA 3HAHA 3G9GA 2RAKA 5C5BA 3ACOA 3Q84A 1I49A 2X3WA 5C5BB 1I4TA 3HAJA 3SYVA 4FZSA 2Q12A 1WDZA 3QE6A 3LLLA 4AKVA 2EFLA 3DYTA 3QWEA 4AVMA 1Y2OA 2FICA 1X04A 2YKTA 2V0OA 2EFKA 3QNIA 3PLTA 1ZWWA 4I1QA 1I4LA 2C08A 2Q13A 2RAIA 2X3VA 2Z0NA 4DCNC 2X3XA 1URUA 4DYLA 3OK8A 4NQIA 2D1LA 4BNEA 2D4CA 3Q0KA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2Z0V A;  3HAI A;  4WPC A;  2ELB A;  4H8S A;  4WPE A;  3CAZ A;  2RAJ A;  4ATM A;  3I2W A;  3M3W A;  1X03 A;  2Z0O A;  4NSW A;  1I4D A;  3SOG A;  3ABH A;  3HAH A;  3G9G A;  2RAK A;  5C5B A;  3ACO A;  3Q84 A;  1I49 A;  2X3W A;  5C5B B;  1I4T A;  3HAJ A;  3SYV A;  4FZS A;  2Q12 A;  1WDZ A;  3QE6 A;  3LLL A;  4AKV A;  2EFL A;  3DYT A;  3QWE A;  4AVM A;  1Y2O A;  2FIC A;  1X04 A;  2YKT A;  2V0O A;  2EFK A;  3QNI A;  3PLT A;  1ZWW A;  4I1Q A;  1I4L A;  2C08 A;  2Q13 A;  2RAI A;  2X3V A;  2Z0N A;  4DCN C;  2X3X A;  1URU A;  4DYL A;  3OK8 A;  4NQI A;  2D1L A;  4BNE A;  2D4C A;  3Q0K A; 
#chains in the Genus database with same CATH topology
 4G6Q A;  3T49 A;  4AZ5 A;  1QWU A;  1I49 A;  3QNJ A;  2LXY A;  4AZC B;  2F7P A;  2WIN M;  4FZO A;  3BVV A;  1HTY A;  4IWO A;  3T47 A;  4I1Q A;  1GN9 A;  4JNE A;  4E3C A;  3BLB A;  2YLA A;  4H6I A;  4B9Q A;  2GAF D;  4EZP A;  3CKD A;  3DX0 A;  4M0M A;  3I2W A;  2Z0O A;  3DPQ A;  3ER8 C;  2YIV X;  3T4A G;  5C5B B;  3UIT A;  1MJG A;  2F7O A;  2FIC A;  3ER9 B;  3KAV A;  2V0O A;  2YIA A;  3BVW A;  3VEA A;  3B51 X;  4EZX A;  4UDY X;  1TQT A;  2OW7 A;  3EJU A;  3B53 X;  3D4Y A;  2WYH A;  4JNF A;  1E1D A;  4H8S A;  2RAJ A;  1X03 A;  2YIB A;  3I04 A;  3VEB A;  4D8J A;  2JNS A;  1WDZ A;  3T48 A;  3KAW A;  4AZI A;  3L3P A;  4IM0 A;  2Q13 A;  1OA1 A;  3D4Z A;  3F7W A;  4JWD A;  3OK8 A;  2D4C A;  2X5C A;  4HYB A;  2Z0V A;  4ATM A;  2OBM A;  3ERC C;  2F7R A;  4FZS A;  3KDR A;  3DYT A;  3OHX M;  4EZZ A;  3BUD A;  1I4L A;  1LQ7 A;  4JN4 A;  3DDF A;  4WPE A;  3DX2 A;  3HAH A;  3ACO A;  1HWW A;  2MI7 A;  3EJR A;  4EZN A;  3LVT A;  4R5G A;  4EZW A;  2WYI A;  1Y2O A;  4IM3 A;  4R5K A;  4JWC A;  1DKZ A;  2RT6 A;  2QFF A;  3LMF A;  4DYL A;  3BVX A;  5FLE X;  2F1B A;  3SOG A;  4KIK A;  3HAJ A;  4HR1 A;  4AVM A;  2C08 A;  2YL5 A;  3I01 A;  1ZYL A;  3EJT A;  1W9M A;  2OBL A;  3BUQ A;  3SYV A;  4EZO A;  2PY6 A;  2KHO A;  4AKV A;  3DPO A;  2QXL A;  1X04 A;  1E9V A;  1HXK A;  3O3N B;  2YL6 A;  3DDG A;  4F00 A;  3GI7 A;  4IWP A;  1E2U A;  4EZU A;  1U00 A;  2LM0 A;  3DX3 A;  2RAK A;  2ND1 A;  3O3O B;  3LLL A;  1UPX A;  3BVU A;  3CV5 A;  1SU8 A;  3PLT A;  5E84 A;  2OO2 A;  1TQV A;  4DCN C;  1URU A;  3EJP A;  4R5I A;  2D1L A;  3Q0K A;  3D2E A;  3HAI A;  4EZY A;  1TQW A;  3Q84 A;  1I4T A;  2YI8 A;  3D52 A;  2F7Q A;  3QE6 A;  3QWE A;  2YKT A;  2JNK A;  4EZR A;  2YL9 A;  3BVT A;  2EX3 B;  2EWF A;  2YLL A;  4JWE A;  4PO2 A;  4F01 A;  4KIK B;  4HR1 B;  3QNI A;  2F18 A;  4EZQ A;  2X3V A;  2Z0N A;  3DX1 A;  4FM3 A;  3L3O M;  3A98 A;  4E81 A;  3RPM A;  4JL9 A;  3D51 A;  1GNT A;  1O7D B;  2EFK A;  2Z8Y A;  3CVR A;  4IWQ A;  3BUP A;  4EZS A;  3CAZ A;  4JWI A;  3D2F A;  3ABH A;  1YWM A;  4IW0 A;  5KBP A;  2YL8 A;  4AZ6 A;  2EFL A;  1QX1 A;  4EZV A;  4UDX X;  4AZB A;  3D50 A;  4AZG A;  4NQI A;  2N3K A;  3CZS A;  3EJQ A;  4NSW A;  1O7D C;  1R5E A;  2NCZ A;  4AZC A;  3RV1 A;  3DX4 A;  4IM2 A;  4R5L A;  2GA9 D;  2YI9 A;  2F1A A;  4H6H A;  3BUI A;  1ZWW A;  3CZN A;  3O3M B;  3T46 A;  1JQK A;  1OA0 A;  4EZT A;  4BNE A;  3BUB A;  1PS3 A;  3ZED A;  1TQU A;  2FYV A;  5C5B A;  4NPH A;  3C7N A;  2GF4 A;  4FZP A;  4HY9 A;  1R34 A;  3OWG A;  1DKY A;  2PMR A;  4AZ7 A;  2RAI A;  1R33 A;  2X3X A;  1QWN A;  5FIG A;  2QKW A;  1DKX A;  3FD9 A;  3M3W A;  2OW6 A;  1I4D A;  1OAO A;  3G9G A;  3QA8 A;  2O0I 1;  3EJS A;  2ALW A;  2OZN B;  3DPP A;  1GNL A;  4WPC A;  2ELB A;  2ND0 A;  3B52 X;  1SU6 A;  2X3W A;  2Q12 A;  1TQS A;  1SU7 A;  3I39 X;  3VKH A;  4AZH A;  4R5J A;  1SUF A;  2ZXQ A;  5TKY A;  3RV0 A;  4JLC A; 
#chains in the Genus database with same CATH homology
 2Z0V A;  3HAI A;  4WPC A;  2ELB A;  4H8S A;  4WPE A;  3CAZ A;  2RAJ A;  4ATM A;  3I2W A;  3M3W A;  1X03 A;  2Z0O A;  4NSW A;  1I4D A;  3SOG A;  3ABH A;  3HAH A;  3G9G A;  2RAK A;  5C5B A;  3ACO A;  3Q84 A;  1I49 A;  2X3W A;  5C5B B;  1I4T A;  3HAJ A;  3SYV A;  4FZS A;  2Q12 A;  1WDZ A;  3QE6 A;  3LLL A;  4AKV A;  2EFL A;  3DYT A;  3QWE A;  4AVM A;  1Y2O A;  2FIC A;  1X04 A;  2YKT A;  2V0O A;  2EFK A;  3QNI A;  3PLT A;  1ZWW A;  4I1Q A;  1I4L A;  2C08 A;  2Q13 A;  2RAI A;  2X3V A;  2Z0N A;  4DCN C;  2X3X A;  1URU A;  4DYL A;  3OK8 A;  4NQI A;  2D1L A;  4BNE A;  2D4C A;  3Q0K A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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