4FZSA

Structure of human snx1 bar domain
Total Genus 93
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
93
sequence length
209
structure length
209
Chain Sequence
SDIWFEEKLQEVECEEQRLRKLHAVVETLVNHRKELALNTAQFAKSLAMLGSSEDNTALSRALSQLAEVEEKIEQLHQEQANNDFFLLAELLSDYIRLLAIVRAAFDQRMKTWQRWQDAQATLQKKREAEARLLWANKPDKLQQAKDEILEWESRVTQYERDFERISTVVRKEVIRFEKEKSKDFKNHVIKYLETLLYSQQQLAKYWEA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Protein transport
molecule keywords Sorting nexin-1
publication title Molecular insight into vesicle-to-tubule membrane remodeling by SNX-BAR proteins
rcsb
source organism Homo sapiens
total genus 93
structure length 209
sequence length 209
chains with identical sequence B
ec nomenclature
pdb deposition date 2012-07-07
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1270.60 Mainly Alpha Up-down Bundle Substrate Binding Domain Of Dnak; Chain:A; Domain 2 Arfaptin homology (AH) domain/BAR domain 4fzsA00
1I4DA 2YKTA 3OK8A 3CAZA 1X03A 2RAJA 2V0OA 4FZSA 4I1QA 3HAHA 2EFKA 3DYTA 4ATMA 2ELBA 2FICA 2X3XA 2Q13A 3M3WA 3QNIA 3LLLA 2Q12A 2Z0NA 2D1LA 3Q84A 3HAJA 1I4TA 1URUA 4BNEA 2X3WA 3G9GA 1WDZA 2Z0VA 3QE6A 4NSWA 3I2WA 1X04A 4AVMA 1I49A 4DYLA 2RAKA 2RAIA 4NQIA 4WPCA 4DCNC 3ABHA 5C5BB 1Y2OA 2D4CA 2C08A 3Q0KA 4WPEA 4AKVA 3PLTA 3HAIA 3QWEA 1ZWWA 2Z0OA 4H8SA 2EFLA 2X3VA 5C5BA 3SYVA 3ACOA 1I4LA 3SOGA
chains in the Genus database with same CATH superfamily
3C7NA 3D4YA 4NPHA 3B51X 3QE6A 3DX4A 1MJGA 4UDYX 3BVVA 4WPCA 2YL6A 3EJTA 2O0I1 3O3OB 4AKVA 2KHOA 1GNLA 3ACOA 1R33A 2GF4A 3FD9A 3BLBA 2GAFD 3ER8C 2GA9D 4HR1B 2D1LA 3BUBA 3I2WA 1X04A 2PY6A 4EZTA 4AZIA 1HXKA 3VKHA 3T48A 1QWUA 1E2UA 2X5CA 2YKTA 2FYVA 2RAJA 2F7QA 2EFKA 1GN9A 4EZNA 3G9GA 4E3CA 1WDZA 2OBMA 4EZRA 4IM0A 4B9QA 4EZWA 3ER9B 5FLEX 3DX2A 3DDFA 2Z8YA 3CAZA 4JWEA 2YLAA 4ATMA 3L3OM 4PO2A 2F7OA 3HAJA 1URUA 4JLCA 4R5GA 4EZQA 4EZXA 3QA8A 1UPXA 4JWIA 5E84A 3OK8A 1HWWA 3BVUA 4F00A 2JNSA 2Q12A 4KIKB 3B52X 3O3MB 3EJPA 2RAKA 2RAIA 5C5BB 3I04A 3ERCC 1Y2OA 3Q0KA 3PLTA 1U00A 4H8SA 2F7RA 1W9MA 1DKXA 1I4DA 4AZ7A 4IM2A 3DPOA 1R5EA 2Z0NA 2Z0VA 4AZ5A 4HR1A 3ZEDA 3ABHA 2ZXQA 2MI7A 2YI9A 3EJQA 2OO2A 4H6HA 2ND1A 4AZCA 2EX3B 1LQ7A 4JWCA 4EZSA 3T47A 1OA1A 1SU7A 3F7WA 1I49A 2RT6A 1E1DA 2C08A 3EJUA 3QWEA 2YL5A 4AZGA 3L3PA 3UITA 2PMRA 3EJSA 3CVRA 3D2EA 4I1QA 1PS3A 2ALWA 3CZSA 1SU6A 4DCNC 2LXYA 2WINM 1QWNA 2D4CA 4IWPA 3RV1A 3D2FA 3DX3A 2YL9A 2OW6A 4IM3A 4FM3A 5KBPA 4IWOA 1OA0A 3DPQA 3T46A 3DDGA 1ZWWA 2YIAA 4JNFA 2ND0A 1JQKA 4HYBA 1YWMA 3I39X 3DX1A 2ELBA 3M3WA 2Q13A 3LLLA 4M0MA 2WYHA 3D4ZA 4EZZA 3LMFA 3RV0A 3GI7A 4E81A 2QKWA 2YLLA 3KAVA 1HTYA 1TQUA 1TQSA 2F18A 4G6QA 4EZYA 3CKDA 4AZBA 3EJRA 4EZUA 4JWDA 4AVMA 3BUIA 4R5LA 4D8JA 4NQIA 1DKZA 3CV5A 1QX1A 2JNKA 4EZVA 2LM0A 4IW0A 1X03A 4R5JA 3O3NB 3HAHA 1ZYLA 3QNIA 3VEAA 3D50A 4EZPA 1SUFA 3OHXM 1O7DB 4AZ6A 2YIBA 2WYIA 4WPEA 4AZHA 2EFLA 3BVTA 3SYVA 3B53X 3A98A 2OZNB 2F7PA 3CZNA 4H6IA 3LVTA 2OW7A 1I4TA 2X3WA 3BVWA 2QXLA 1E9VA 4AZCB 4JL9A 1DKYA 3BUQA 3HAIA 2X3VA 1R34A 1TQTA 1I4LA 3DPPA 3D51A 3BUDA 2V0OA 2QFFA 2X3XA 4FZOA 3Q84A 4HY9A 1SU8A 3KAWA 4DYLA 2EWFA 4KIKA 2F1BA 2YIVX 3KDRA 5C5BA 2NCZA 4F01A 2YI8A 3D52A 1OAOA 2F1AA 4JNEA 2FICA 4FZPA 3BUPA 4BNEA 4NSWA 4EZOA 3I01A 4R5KA 4JN4A 1TQVA 2Z0OA 3T49A 2N3KA 3BVXA 3OWGA 3SOGA 3T4AG 1TQWA 4FZSA 3DYTA 1O7DC 3DX0A 2YL8A 4R5IA 3QNJA 5TKYA 4IWQA 2OBLA 1GNTA 3RPMA 5FIGA 3VEBA 4UDXX
chains in the Genus database with same CATH topology
1I4DA 2YKTA 3OK8A 3CAZA 1X03A 2RAJA 2V0OA 4FZSA 4I1QA 3HAHA 2EFKA 3DYTA 4ATMA 2ELBA 2FICA 2X3XA 2Q13A 3M3WA 3QNIA 3LLLA 2Q12A 2Z0NA 2D1LA 3Q84A 3HAJA 1I4TA 1URUA 4BNEA 2X3WA 3G9GA 1WDZA 2Z0VA 3QE6A 4NSWA 3I2WA 1X04A 4AVMA 1I49A 4DYLA 2RAKA 2RAIA 4NQIA 4WPCA 4DCNC 3ABHA 5C5BB 1Y2OA 2D4CA 2C08A 3Q0KA 4WPEA 4AKVA 3PLTA 3HAIA 3QWEA 1ZWWA 2Z0OA 4H8SA 2EFLA 2X3VA 5C5BA 3SYVA 3ACOA 1I4LA 3SOGA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1I4D A;  2YKT A;  3OK8 A;  3CAZ A;  1X03 A;  2RAJ A;  2V0O A;  4FZS A;  4I1Q A;  3HAH A;  2EFK A;  3DYT A;  4ATM A;  2ELB A;  2FIC A;  2X3X A;  2Q13 A;  3M3W A;  3QNI A;  3LLL A;  2Q12 A;  2Z0N A;  2D1L A;  3Q84 A;  3HAJ A;  1I4T A;  1URU A;  4BNE A;  2X3W A;  3G9G A;  1WDZ A;  2Z0V A;  3QE6 A;  4NSW A;  3I2W A;  1X04 A;  4AVM A;  1I49 A;  4DYL A;  2RAK A;  2RAI A;  4NQI A;  4WPC A;  4DCN C;  3ABH A;  5C5B B;  1Y2O A;  2D4C A;  2C08 A;  3Q0K A;  4WPE A;  4AKV A;  3PLT A;  3HAI A;  3QWE A;  1ZWW A;  2Z0O A;  4H8S A;  2EFL A;  2X3V A;  5C5B A;  3SYV A;  3ACO A;  1I4L A;  3SOG A; 
#chains in the Genus database with same CATH topology
 3C7N A;  3D4Y A;  4NPH A;  3B51 X;  3QE6 A;  3DX4 A;  1MJG A;  4UDY X;  3BVV A;  4WPC A;  2YL6 A;  3EJT A;  2O0I 1;  3O3O B;  4AKV A;  2KHO A;  1GNL A;  3ACO A;  1R33 A;  2GF4 A;  3FD9 A;  3BLB A;  2GAF D;  3ER8 C;  2GA9 D;  4HR1 B;  2D1L A;  3BUB A;  3I2W A;  1X04 A;  2PY6 A;  4EZT A;  4AZI A;  1HXK A;  3VKH A;  3T48 A;  1QWU A;  1E2U A;  2X5C A;  2YKT A;  2FYV A;  2RAJ A;  2F7Q A;  2EFK A;  1GN9 A;  4EZN A;  3G9G A;  4E3C A;  1WDZ A;  2OBM A;  4EZR A;  4IM0 A;  4B9Q A;  4EZW A;  3ER9 B;  5FLE X;  3DX2 A;  3DDF A;  2Z8Y A;  3CAZ A;  4JWE A;  2YLA A;  4ATM A;  3L3O M;  4PO2 A;  2F7O A;  3HAJ A;  1URU A;  4JLC A;  4R5G A;  4EZQ A;  4EZX A;  3QA8 A;  1UPX A;  4JWI A;  5E84 A;  3OK8 A;  1HWW A;  3BVU A;  4F00 A;  2JNS A;  2Q12 A;  4KIK B;  3B52 X;  3O3M B;  3EJP A;  2RAK A;  2RAI A;  5C5B B;  3I04 A;  3ERC C;  1Y2O A;  3Q0K A;  3PLT A;  1U00 A;  4H8S A;  2F7R A;  1W9M A;  1DKX A;  1I4D A;  4AZ7 A;  4IM2 A;  3DPO A;  1R5E A;  2Z0N A;  2Z0V A;  4AZ5 A;  4HR1 A;  3ZED A;  3ABH A;  2ZXQ A;  2MI7 A;  2YI9 A;  3EJQ A;  2OO2 A;  4H6H A;  2ND1 A;  4AZC A;  2EX3 B;  1LQ7 A;  4JWC A;  4EZS A;  3T47 A;  1OA1 A;  1SU7 A;  3F7W A;  1I49 A;  2RT6 A;  1E1D A;  2C08 A;  3EJU A;  3QWE A;  2YL5 A;  4AZG A;  3L3P A;  3UIT A;  2PMR A;  3EJS A;  3CVR A;  3D2E A;  4I1Q A;  1PS3 A;  2ALW A;  3CZS A;  1SU6 A;  4DCN C;  2LXY A;  2WIN M;  1QWN A;  2D4C A;  4IWP A;  3RV1 A;  3D2F A;  3DX3 A;  2YL9 A;  2OW6 A;  4IM3 A;  4FM3 A;  5KBP A;  4IWO A;  1OA0 A;  3DPQ A;  3T46 A;  3DDG A;  1ZWW A;  2YIA A;  4JNF A;  2ND0 A;  1JQK A;  4HYB A;  1YWM A;  3I39 X;  3DX1 A;  2ELB A;  3M3W A;  2Q13 A;  3LLL A;  4M0M A;  2WYH A;  3D4Z A;  4EZZ A;  3LMF A;  3RV0 A;  3GI7 A;  4E81 A;  2QKW A;  2YLL A;  3KAV A;  1HTY A;  1TQU A;  1TQS A;  2F18 A;  4G6Q A;  4EZY A;  3CKD A;  4AZB A;  3EJR A;  4EZU A;  4JWD A;  4AVM A;  3BUI A;  4R5L A;  4D8J A;  4NQI A;  1DKZ A;  3CV5 A;  1QX1 A;  2JNK A;  4EZV A;  2LM0 A;  4IW0 A;  1X03 A;  4R5J A;  3O3N B;  3HAH A;  1ZYL A;  3QNI A;  3VEA A;  3D50 A;  4EZP A;  1SUF A;  3OHX M;  1O7D B;  4AZ6 A;  2YIB A;  2WYI A;  4WPE A;  4AZH A;  2EFL A;  3BVT A;  3SYV A;  3B53 X;  3A98 A;  2OZN B;  2F7P A;  3CZN A;  4H6I A;  3LVT A;  2OW7 A;  1I4T A;  2X3W A;  3BVW A;  2QXL A;  1E9V A;  4AZC B;  4JL9 A;  1DKY A;  3BUQ A;  3HAI A;  2X3V A;  1R34 A;  1TQT A;  1I4L A;  3DPP A;  3D51 A;  3BUD A;  2V0O A;  2QFF A;  2X3X A;  4FZO A;  3Q84 A;  4HY9 A;  1SU8 A;  3KAW A;  4DYL A;  2EWF A;  4KIK A;  2F1B A;  2YIV X;  3KDR A;  5C5B A;  2NCZ A;  4F01 A;  2YI8 A;  3D52 A;  1OAO A;  2F1A A;  4JNE A;  2FIC A;  4FZP A;  3BUP A;  4BNE A;  4NSW A;  4EZO A;  3I01 A;  4R5K A;  4JN4 A;  1TQV A;  2Z0O A;  3T49 A;  2N3K A;  3BVX A;  3OWG A;  3SOG A;  3T4A G;  1TQW A;  4FZS A;  3DYT A;  1O7D C;  3DX0 A;  2YL8 A;  4R5I A;  3QNJ A;  5TKY A;  4IWQ A;  2OBL A;  1GNT A;  3RPM A;  5FIG A;  3VEB A;  4UDX X; 
#chains in the Genus database with same CATH homology
 1I4D A;  2YKT A;  3OK8 A;  3CAZ A;  1X03 A;  2RAJ A;  2V0O A;  4FZS A;  4I1Q A;  3HAH A;  2EFK A;  3DYT A;  4ATM A;  2ELB A;  2FIC A;  2X3X A;  2Q13 A;  3M3W A;  3QNI A;  3LLL A;  2Q12 A;  2Z0N A;  2D1L A;  3Q84 A;  3HAJ A;  1I4T A;  1URU A;  4BNE A;  2X3W A;  3G9G A;  1WDZ A;  2Z0V A;  3QE6 A;  4NSW A;  3I2W A;  1X04 A;  4AVM A;  1I49 A;  4DYL A;  2RAK A;  2RAI A;  4NQI A;  4WPC A;  4DCN C;  3ABH A;  5C5B B;  1Y2O A;  2D4C A;  2C08 A;  3Q0K A;  4WPE A;  4AKV A;  3PLT A;  3HAI A;  3QWE A;  1ZWW A;  2Z0O A;  4H8S A;  2EFL A;  2X3V A;  5C5B A;  3SYV A;  3ACO A;  1I4L A;  3SOG A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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