4FZSA

Structure of human snx1 bar domain
Total Genus 93
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
93
sequence length
209
structure length
209
Chain Sequence
SDIWFEEKLQEVECEEQRLRKLHAVVETLVNHRKELALNTAQFAKSLAMLGSSEDNTALSRALSQLAEVEEKIEQLHQEQANNDFFLLAELLSDYIRLLAIVRAAFDQRMKTWQRWQDAQATLQKKREAEARLLWANKPDKLQQAKDEILEWESRVTQYERDFERISTVVRKEVIRFEKEKSKDFKNHVIKYLETLLYSQQQLAKYWEA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Sorting nexin-1
publication title Molecular insight into vesicle-to-tubule membrane remodeling by SNX-BAR proteins
rcsb
source organism Homo sapiens
molecule tags Protein transport
total genus 93
structure length 209
sequence length 209
chains with identical sequence B
ec nomenclature
pdb deposition date 2012-07-07
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1270.60 Mainly Alpha Up-down Bundle Substrate Binding Domain Of Dnak; Chain:A; Domain 2 Arfaptin homology (AH) domain/BAR domain 4fzsA00
2C08A 2EFLA 4DYLA 1I49A 3M3WA 3HAJA 4FZSA 2Z0OA 2RAKA 3HAHA 1I4TA 2Z0NA 2ELBA 2RAIA 3QNIA 1URUA 4NSWA 4H8SA 2D1LA 3QWEA 1X03A 4WPCA 5C5BA 2Z0VA 3OK8A 3DYTA 2Q12A 1WDZA 5C5BB 3ABHA 1X04A 4BNEA 2D4CA 3Q84A 1I4LA 2V0OA 2FICA 4ATMA 3SYVA 4AKVA 2X3WA 3HAIA 3QE6A 1I4DA 3LLLA 2YKTA 3Q0KA 2EFKA 2X3VA 1Y2OA 2RAJA 3I2WA 2Q13A 4I1QA 1ZWWA 3CAZA 3SOGA 3G9GA 4AVMA 4DCNC 3PLTA 4WPEA 4NQIA 3ACOA 2X3XA
chains in the Genus database with same CATH superfamily
2YL8A 3T49A 4IWOA 4FZSA 4AZ6A 1JQKA 3EJRA 3T4AG 3ABHA 2N3KA 1R5EA 2O0I1 1GNLA 2F7QA 1HXKA 3Q0KA 2QXLA 4EZWA 1TQWA 2Q13A 1HTYA 3D2FA 2C08A 3VKHA 3DDGA 3DYTA 3DX4A 4IM0A 3I01A 2YIAA 3D50A 2YI8A 3L3PA 1OA1A 3LVTA 4I1QA 3SOGA 4JWEA 4FZPA 4EZOA 4EZPA 3KDRA 3BUIA 2D1LA 1HWWA 2YLAA 4JWCA 5C5BA 3DPQA 3DX0A 3BVVA 4ATMA 3UITA 4AKVA 3HAIA 3LLLA 4EZZA 1PS3A 1E2UA 4DYLA 4M0MA 2Z0NA 1W9MA 1E1DA 1URUA 1SU8A 3QWEA 4G6QA 1TQVA 4WPCA 3OK8A 2PMRA 5C5BB 3BUBA 4JL9A 2D4CA 5FIGA 4F01A 3CAZA 5FLEX 3D4YA 1YWMA 4UDYX 4HR1B 1TQUA 2RAKA 3HAHA 4E81A 3O3NB 2RAIA 3DX3A 4IW0A 3CVRA 2Q12A 4BNEA 4IWQA 4EZVA 1QX1A 4JWIA 3BVTA 4PO2A 4KIKB 2GF4A 2EFLA 2YL5A 3RV0A 1ZYLA 4F00A 1O7DB 3DPPA 1X03A 4EZQA 1X04A 2LM0A 3B53X 3BVWA 2OW6A 3DX1A 2RAJA 2GA9D 3G9GA 4AZ5A 3ACOA 3A98A 1SU6A 2X5CA 1WDZA 3ERCC 2Z8YA 2FICA 5E84A 3I39X 3D51A 4AZIA 4AZ7A 2YIBA 3T46A 1O7DC 3HAJA 4EZTA 2QFFA 3GI7A 3OHXM 3C7NA 2EX3B 2WYHA 2EWFA 4H8SA 2YL6A 2WYIA 2YLLA 4JLCA 3QA8A 1Y2OA 2YI9A 4EZUA 2YL9A 3D2EA 4R5LA 1GN9A 2WINM 2ALWA 5TKYA 4H6IA 3EJPA 3VEBA 4E3CA 2OBLA 3I2WA 1OAOA 1E9VA 2F1BA 4R5IA 3CKDA 4AZCA 4IM2A 1QWNA 2ELBA 4NSWA 2ZXQA 2QKWA 1I4LA 3SYVA 2ND1A 2X3VA 2NCZA 3ER9B 3D52A 1SUFA 2X3XA 1I49A 3M3WA 3EJTA 1R34A 3F7WA 1I4TA 3BVUA 4EZYA 3QNIA 2OO2A 4AZGA 3LMFA 3I04A 3ZEDA 1UPXA 1OA0A 2EFKA 1GNTA 2YIVX 4D8JA 3BUDA 2Z0OA 3BUPA 3KAWA 1QWUA 1DKZA 3CZSA 2JNKA 2F1AA 3O3MB 3OWGA 4IM3A 1U00A 3FD9A 2F7RA 3T47A 3D4ZA 3L3OM 1R33A 4EZSA 1DKYA 2V0OA 3EJUA 4FZOA 4H6HA 1MJGA 4R5JA 2F7PA 4JNFA 3B51X 3DPOA 1DKXA 4JN4A 4EZNA 4AZHA 3Q84A 3DX2A 3O3OB 1TQTA 3CV5A 3RV1A 4AZBA 3DDFA 1I4DA 3ER8C 2PY6A 2FYVA 4HR1A 3BLBA 4DCNC 4IWPA 4HY9A 3T48A 2JNSA 2LXYA 4EZXA 2OBMA 4B9QA 4JNEA 2ND0A 4UDXX 5KBPA 3KAVA 3BVXA 2Z0VA 4R5KA 3CZNA 4FM3A 4NPHA 3B52X 1TQSA 2OZNB 4KIKA 2X3WA 1LQ7A 1SU7A 2RT6A 4EZRA 1ZWWA 4AVMA 2KHOA 2F18A 4R5GA 3VEAA 4HYBA 3QNJA 3EJQA 3RPMA 4AZCB 2OW7A 2MI7A 2GAFD 4JWDA 3BUQA 3QE6A 2YKTA 2F7OA 4WPEA 3EJSA 3PLTA 4NQIA
chains in the Genus database with same CATH topology
2C08A 2EFLA 4DYLA 1I49A 3M3WA 3HAJA 4FZSA 2Z0OA 2RAKA 3HAHA 1I4TA 2Z0NA 2ELBA 2RAIA 3QNIA 1URUA 4NSWA 4H8SA 2D1LA 3QWEA 1X03A 4WPCA 5C5BA 2Z0VA 3OK8A 3DYTA 2Q12A 1WDZA 5C5BB 3ABHA 1X04A 4BNEA 2D4CA 3Q84A 1I4LA 2V0OA 2FICA 4ATMA 3SYVA 4AKVA 2X3WA 3HAIA 3QE6A 1I4DA 3LLLA 2YKTA 3Q0KA 2EFKA 2X3VA 1Y2OA 2RAJA 3I2WA 2Q13A 4I1QA 1ZWWA 3CAZA 3SOGA 3G9GA 4AVMA 4DCNC 3PLTA 4WPEA 4NQIA 3ACOA 2X3XA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2C08 A;  2EFL A;  4DYL A;  1I49 A;  3M3W A;  3HAJ A;  4FZS A;  2Z0O A;  2RAK A;  3HAH A;  1I4T A;  2Z0N A;  2ELB A;  2RAI A;  3QNI A;  1URU A;  4NSW A;  4H8S A;  2D1L A;  3QWE A;  1X03 A;  4WPC A;  5C5B A;  2Z0V A;  3OK8 A;  3DYT A;  2Q12 A;  1WDZ A;  5C5B B;  3ABH A;  1X04 A;  4BNE A;  2D4C A;  3Q84 A;  1I4L A;  2V0O A;  2FIC A;  4ATM A;  3SYV A;  4AKV A;  2X3W A;  3HAI A;  3QE6 A;  1I4D A;  3LLL A;  2YKT A;  3Q0K A;  2EFK A;  2X3V A;  1Y2O A;  2RAJ A;  3I2W A;  2Q13 A;  4I1Q A;  1ZWW A;  3CAZ A;  3SOG A;  3G9G A;  4AVM A;  4DCN C;  3PLT A;  4WPE A;  4NQI A;  3ACO A;  2X3X A; 
#chains in the Genus database with same CATH topology
 2YL8 A;  3T49 A;  4IWO A;  4FZS A;  4AZ6 A;  1JQK A;  3EJR A;  3T4A G;  3ABH A;  2N3K A;  1R5E A;  2O0I 1;  1GNL A;  2F7Q A;  1HXK A;  3Q0K A;  2QXL A;  4EZW A;  1TQW A;  2Q13 A;  1HTY A;  3D2F A;  2C08 A;  3VKH A;  3DDG A;  3DYT A;  3DX4 A;  4IM0 A;  3I01 A;  2YIA A;  3D50 A;  2YI8 A;  3L3P A;  1OA1 A;  3LVT A;  4I1Q A;  3SOG A;  4JWE A;  4FZP A;  4EZO A;  4EZP A;  3KDR A;  3BUI A;  2D1L A;  1HWW A;  2YLA A;  4JWC A;  5C5B A;  3DPQ A;  3DX0 A;  3BVV A;  4ATM A;  3UIT A;  4AKV A;  3HAI A;  3LLL A;  4EZZ A;  1PS3 A;  1E2U A;  4DYL A;  4M0M A;  2Z0N A;  1W9M A;  1E1D A;  1URU A;  1SU8 A;  3QWE A;  4G6Q A;  1TQV A;  4WPC A;  3OK8 A;  2PMR A;  5C5B B;  3BUB A;  4JL9 A;  2D4C A;  5FIG A;  4F01 A;  3CAZ A;  5FLE X;  3D4Y A;  1YWM A;  4UDY X;  4HR1 B;  1TQU A;  2RAK A;  3HAH A;  4E81 A;  3O3N B;  2RAI A;  3DX3 A;  4IW0 A;  3CVR A;  2Q12 A;  4BNE A;  4IWQ A;  4EZV A;  1QX1 A;  4JWI A;  3BVT A;  4PO2 A;  4KIK B;  2GF4 A;  2EFL A;  2YL5 A;  3RV0 A;  1ZYL A;  4F00 A;  1O7D B;  3DPP A;  1X03 A;  4EZQ A;  1X04 A;  2LM0 A;  3B53 X;  3BVW A;  2OW6 A;  3DX1 A;  2RAJ A;  2GA9 D;  3G9G A;  4AZ5 A;  3ACO A;  3A98 A;  1SU6 A;  2X5C A;  1WDZ A;  3ERC C;  2Z8Y A;  2FIC A;  5E84 A;  3I39 X;  3D51 A;  4AZI A;  4AZ7 A;  2YIB A;  3T46 A;  1O7D C;  3HAJ A;  4EZT A;  2QFF A;  3GI7 A;  3OHX M;  3C7N A;  2EX3 B;  2WYH A;  2EWF A;  4H8S A;  2YL6 A;  2WYI A;  2YLL A;  4JLC A;  3QA8 A;  1Y2O A;  2YI9 A;  4EZU A;  2YL9 A;  3D2E A;  4R5L A;  1GN9 A;  2WIN M;  2ALW A;  5TKY A;  4H6I A;  3EJP A;  3VEB A;  4E3C A;  2OBL A;  3I2W A;  1OAO A;  1E9V A;  2F1B A;  4R5I A;  3CKD A;  4AZC A;  4IM2 A;  1QWN A;  2ELB A;  4NSW A;  2ZXQ A;  2QKW A;  1I4L A;  3SYV A;  2ND1 A;  2X3V A;  2NCZ A;  3ER9 B;  3D52 A;  1SUF A;  2X3X A;  1I49 A;  3M3W A;  3EJT A;  1R34 A;  3F7W A;  1I4T A;  3BVU A;  4EZY A;  3QNI A;  2OO2 A;  4AZG A;  3LMF A;  3I04 A;  3ZED A;  1UPX A;  1OA0 A;  2EFK A;  1GNT A;  2YIV X;  4D8J A;  3BUD A;  2Z0O A;  3BUP A;  3KAW A;  1QWU A;  1DKZ A;  3CZS A;  2JNK A;  2F1A A;  3O3M B;  3OWG A;  4IM3 A;  1U00 A;  3FD9 A;  2F7R A;  3T47 A;  3D4Z A;  3L3O M;  1R33 A;  4EZS A;  1DKY A;  2V0O A;  3EJU A;  4FZO A;  4H6H A;  1MJG A;  4R5J A;  2F7P A;  4JNF A;  3B51 X;  3DPO A;  1DKX A;  4JN4 A;  4EZN A;  4AZH A;  3Q84 A;  3DX2 A;  3O3O B;  1TQT A;  3CV5 A;  3RV1 A;  4AZB A;  3DDF A;  1I4D A;  3ER8 C;  2PY6 A;  2FYV A;  4HR1 A;  3BLB A;  4DCN C;  4IWP A;  4HY9 A;  3T48 A;  2JNS A;  2LXY A;  4EZX A;  2OBM A;  4B9Q A;  4JNE A;  2ND0 A;  4UDX X;  5KBP A;  3KAV A;  3BVX A;  2Z0V A;  4R5K A;  3CZN A;  4FM3 A;  4NPH A;  3B52 X;  1TQS A;  2OZN B;  4KIK A;  2X3W A;  1LQ7 A;  1SU7 A;  2RT6 A;  4EZR A;  1ZWW A;  4AVM A;  2KHO A;  2F18 A;  4R5G A;  3VEA A;  4HYB A;  3QNJ A;  3EJQ A;  3RPM A;  4AZC B;  2OW7 A;  2MI7 A;  2GAF D;  4JWD A;  3BUQ A;  3QE6 A;  2YKT A;  2F7O A;  4WPE A;  3EJS A;  3PLT A;  4NQI A; 
#chains in the Genus database with same CATH homology
 2C08 A;  2EFL A;  4DYL A;  1I49 A;  3M3W A;  3HAJ A;  4FZS A;  2Z0O A;  2RAK A;  3HAH A;  1I4T A;  2Z0N A;  2ELB A;  2RAI A;  3QNI A;  1URU A;  4NSW A;  4H8S A;  2D1L A;  3QWE A;  1X03 A;  4WPC A;  5C5B A;  2Z0V A;  3OK8 A;  3DYT A;  2Q12 A;  1WDZ A;  5C5B B;  3ABH A;  1X04 A;  4BNE A;  2D4C A;  3Q84 A;  1I4L A;  2V0O A;  2FIC A;  4ATM A;  3SYV A;  4AKV A;  2X3W A;  3HAI A;  3QE6 A;  1I4D A;  3LLL A;  2YKT A;  3Q0K A;  2EFK A;  2X3V A;  1Y2O A;  2RAJ A;  3I2W A;  2Q13 A;  4I1Q A;  1ZWW A;  3CAZ A;  3SOG A;  3G9G A;  4AVM A;  4DCN C;  3PLT A;  4WPE A;  4NQI A;  3ACO A;  2X3X A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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