3KAVA

Crystal structure of the mutant (l80m) pa2107 protein from pseudomonas aeruginosa, northeast structural genomics consortium target par198
Total Genus 43
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
43
sequence length
102
structure length
102
Chain Sequence
AAQAPEERCRLAAQACIRACERYLALCTESSREQRQHAGDCADLCRLAALLMERRSPWAPAACELAARYALACAERCDGDEPLERECAGACRRFVEACRPLL
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Structural genomics, unknown function
source organism Pseudomonas aeruginosa
publication title Northeast Structural Genomics Consortium Target PaR198
rcsb
molecule keywords uncharacterized protein PA2107
total genus 43
structure length 102
sequence length 102
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2009-10-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03860 DUF326 Domain of Unknown Function (DUF326)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1270.360 Mainly Alpha Up-down Bundle Substrate Binding Domain Of Dnak; Chain:A; Domain 2 Substrate Binding Domain Of Dnak; Chain:A; Domain 2 3kavA00
3KAVA 3LMFA 3KAWA 5FIGA
chains in the Genus database with same CATH superfamily
3SOGA 2KHOA 3LMFA 4FM3A 2D4CA 2X3WA 5C5BB 1DKXA 3DDFA 2RT6A 3RV1A 3DX1A 3DPOA 1TQUA 1ZWWA 4FZPA 3LVTA 4HR1B 2RAIA 3BUIA 3OWGA 2GA9D 3RV0A 3HAHA 3DX0A 3EJUA 2LXYA 3ACOA 4F00A 4EZNA 3DPQA 3BUPA 5C5BA 2ND1A 3DX3A 4IM0A 3ERCC 4AZ5A 4JL9A 1QX1A 1SUFA 4HR1A 3SYVA 2ALWA 2F7QA 3CVRA 4EZOA 2YIVX 3O3NB 4IM3A 1JQKA 4WPEA 3D52A 2MI7A 1TQSA 4EZTA 2YIAA 3T47A 3CZSA 3B51X 3F7WA 4IW0A 1HTYA 3D50A 2RAJA 2YLAA 5FLEX 1URUA 1O7DC 3BUBA 1X04A 3OHXM 1I4DA 4JN4A 4DCNC 4NPHA 2WYIA 2D1LA 1R5EA 2WINM 4EZXA 4PO2A 3BVUA 4AZIA 1HWWA 3EJTA 3ABHA 3DDGA 3UITA 3L3OM 3I01A 3QE6A 3T49A 4KIKA 1R34A 1X03A 2O0I1 1TQWA 3QNJA 4EZVA 1E9VA 1QWNA 4JWDA 2OW6A 2C08A 1OA1A 3I2WA 1I4TA 3Q0KA 3CAZA 4FZOA 4F01A 4AVMA 1SU7A 1LQ7A 3G9GA 3QNIA 3M3WA 1W9MA 2JNKA 4AZGA 4EZYA 3LLLA 2LM0A 2N3KA 4EZUA 4HY9A 2EX3B 3CZNA 5TKYA 4JNFA 3PLTA 2OW7A 4G6QA 1GNTA 2YI9A 1YWMA 1GN9A 1U00A 4H6IA 4DYLA 3A98A 5KBPA 2FYVA 4IWPA 2JNSA 2Q12A 2X3XA 4AZBA 3DYTA 4IWOA 4R5GA 3CKDA 4BNEA 4M0MA 2Z0NA 3EJRA 4EZPA 4AZ6A 1E2UA 2NCZA 2OBLA 3O3OB 3Q84A 2ND0A 3RPMA 3QA8A 2GF4A 2FICA 3T48A 5E84A 4R5LA 2EFKA 3D51A 3BVTA 3GI7A 4UDXX 2YL5A 2YIBA 1SU8A 1MJGA 2QXLA 4E81A 3KAWA 2Q13A 3O3MB 4HYBA 2QFFA 2YL6A 3DX2A 3BVWA 3C7NA 4EZSA 2YKTA 2Z0OA 4FZSA 2Z0VA 3BLBA 3BVXA 2X5CA 3D4ZA 3VEBA 1GNLA 2OZNB 1I4LA 4R5JA 3CV5A 4AZHA 3ZEDA 2Z8YA 2OBMA 3VKHA 1TQTA 4EZQA 3DPPA 1I49A 3QWEA 1PS3A 2F18A 4R5KA 4ATMA 4UDYX 3B52X 4NSWA 3KAVA 2ELBA 3ER9B 4AKVA 1DKYA 2F7RA 4AZCB 4JNEA 4H6HA 2PMRA 1ZYLA 1OAOA 3D2EA 4R5IA 1R33A 2V0OA 3HAJA 3B53X 3BUQA 1E1DA 2F7PA 1UPXA 1HXKA 1Y2OA 2X3VA 1O7DB 3EJSA 2PY6A 3BUDA 2QKWA 4JWCA 3I39X 4AZCA 3FD9A 1OA0A 3KDRA 2YLLA 4NQIA 1DKZA 3EJQA 2F7OA 2GAFD 4WPCA 4EZRA 2EWFA 4AZ7A 3D4YA 4IM2A 3HAIA 5FIGA 4B9QA 3T46A 2F1AA 4JWEA 2F1BA 3EJPA 1SU6A 4E3CA 1QWUA 2YL9A 4IWQA 4EZWA 4KIKB 4I1QA 2EFLA 1TQVA 3BVVA 4JWIA 4EZZA 3DX4A 3I04A 2ZXQA 2RAKA 3OK8A 2YL8A 3ER8C 2OO2A 4H8SA 2YI8A 4JLCA 3T4AG 4D8JA 1WDZA 2WYHA 3L3PA 3D2FA 3VEAA
chains in the Genus database with same CATH topology
4JN4A 2KHOA 3LMFA 4NPHA 4FM3A 4IWOA 4JNEA 4H6HA 1ZYLA 4R5GA 1OAOA 3D2EA 4M0MA 2WINM 1DKXA 4EZXA 4R5IA 4EZPA 2RT6A 3RV1A 4PO2A 1E2UA 2NCZA 3DPOA 2OBLA 3O3OB 3UITA 2ND0A 3B53X 3QA8A 3T48A 3L3OM 1E1DA 4HR1B 3I01A 1UPXA 5E84A 4R5LA 3T49A 3OWGA 2GA9D 4KIKA 3RV0A 2PY6A 4JWCA 3I39X 3GI7A 4UDXX 4F00A 4EZNA 3DPQA 2YIBA 1SU8A 3FD9A 1MJGA 2QXLA 4E81A 1OA0A 2ND1A 3KAWA 3QNJA 3O3MB 3KDRA 4HYBA 2QFFA 4EZVA 1E9VA 4IM0A 1DKZA 3C7NA 4EZSA 4JWDA 3ERCC 2GAFD 1OA1A 4JL9A 2X5CA 3VEBA 1GNLA 1SUFA 4HR1A 4R5JA 4F01A 2EWFA 4EZRA 3ZEDA 2Z8YA 1SU7A 2OBMA 3VKHA 4IM2A 5FIGA 4B9QA 3T46A 1W9MA 4JWEA 4EZQA 4EZOA 1SU6A 2YIVX 4E3CA 3DPPA 4IWQA 4EZWA 3O3NB 4KIKB 4IM3A 4EZYA 1JQKA 2LM0A 2N3KA 4EZUA 4EZTA 4HY9A 2EX3B 4R5KA 4JWIA 4EZZA 4UDYX 5TKYA 2YIAA 3B52X 4JNFA 3I04A 3T47A 3B51X 3F7WA 4G6QA 4IW0A 1GNTA 2YI9A 3ER8C 3KAVA 2YI8A 1GN9A 1U00A 4H6IA 4JLCA 3A98A 5FLEX 3T4AG 3ER9B 4D8JA 4IWPA 1DKYA 2JNSA 3OHXM 3D2FA 3VEAA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3KAV A;  3LMF A;  3KAW A;  5FIG A; 
#chains in the Genus database with same CATH topology
 3SOG A;  2KHO A;  3LMF A;  4FM3 A;  2D4C A;  2X3W A;  5C5B B;  1DKX A;  3DDF A;  2RT6 A;  3RV1 A;  3DX1 A;  3DPO A;  1TQU A;  1ZWW A;  4FZP A;  3LVT A;  4HR1 B;  2RAI A;  3BUI A;  3OWG A;  2GA9 D;  3RV0 A;  3HAH A;  3DX0 A;  3EJU A;  2LXY A;  3ACO A;  4F00 A;  4EZN A;  3DPQ A;  3BUP A;  5C5B A;  2ND1 A;  3DX3 A;  4IM0 A;  3ERC C;  4AZ5 A;  4JL9 A;  1QX1 A;  1SUF A;  4HR1 A;  3SYV A;  2ALW A;  2F7Q A;  3CVR A;  4EZO A;  2YIV X;  3O3N B;  4IM3 A;  1JQK A;  4WPE A;  3D52 A;  2MI7 A;  1TQS A;  4EZT A;  2YIA A;  3T47 A;  3CZS A;  3B51 X;  3F7W A;  4IW0 A;  1HTY A;  3D50 A;  2RAJ A;  2YLA A;  5FLE X;  1URU A;  1O7D C;  3BUB A;  1X04 A;  3OHX M;  1I4D A;  4JN4 A;  4DCN C;  4NPH A;  2WYI A;  2D1L A;  1R5E A;  2WIN M;  4EZX A;  4PO2 A;  3BVU A;  4AZI A;  1HWW A;  3EJT A;  3ABH A;  3DDG A;  3UIT A;  3L3O M;  3I01 A;  3QE6 A;  3T49 A;  4KIK A;  1R34 A;  1X03 A;  2O0I 1;  1TQW A;  3QNJ A;  4EZV A;  1E9V A;  1QWN A;  4JWD A;  2OW6 A;  2C08 A;  1OA1 A;  3I2W A;  1I4T A;  3Q0K A;  3CAZ A;  4FZO A;  4F01 A;  4AVM A;  1SU7 A;  1LQ7 A;  3G9G A;  3QNI A;  3M3W A;  1W9M A;  2JNK A;  4AZG A;  4EZY A;  3LLL A;  2LM0 A;  2N3K A;  4EZU A;  4HY9 A;  2EX3 B;  3CZN A;  5TKY A;  4JNF A;  3PLT A;  2OW7 A;  4G6Q A;  1GNT A;  2YI9 A;  1YWM A;  1GN9 A;  1U00 A;  4H6I A;  4DYL A;  3A98 A;  5KBP A;  2FYV A;  4IWP A;  2JNS A;  2Q12 A;  2X3X A;  4AZB A;  3DYT A;  4IWO A;  4R5G A;  3CKD A;  4BNE A;  4M0M A;  2Z0N A;  3EJR A;  4EZP A;  4AZ6 A;  1E2U A;  2NCZ A;  2OBL A;  3O3O B;  3Q84 A;  2ND0 A;  3RPM A;  3QA8 A;  2GF4 A;  2FIC A;  3T48 A;  5E84 A;  4R5L A;  2EFK A;  3D51 A;  3BVT A;  3GI7 A;  4UDX X;  2YL5 A;  2YIB A;  1SU8 A;  1MJG A;  2QXL A;  4E81 A;  3KAW A;  2Q13 A;  3O3M B;  4HYB A;  2QFF A;  2YL6 A;  3DX2 A;  3BVW A;  3C7N A;  4EZS A;  2YKT A;  2Z0O A;  4FZS A;  2Z0V A;  3BLB A;  3BVX A;  2X5C A;  3D4Z A;  3VEB A;  1GNL A;  2OZN B;  1I4L A;  4R5J A;  3CV5 A;  4AZH A;  3ZED A;  2Z8Y A;  2OBM A;  3VKH A;  1TQT A;  4EZQ A;  3DPP A;  1I49 A;  3QWE A;  1PS3 A;  2F18 A;  4R5K A;  4ATM A;  4UDY X;  3B52 X;  4NSW A;  3KAV A;  2ELB A;  3ER9 B;  4AKV A;  1DKY A;  2F7R A;  4AZC B;  4JNE A;  4H6H A;  2PMR A;  1ZYL A;  1OAO A;  3D2E A;  4R5I A;  1R33 A;  2V0O A;  3HAJ A;  3B53 X;  3BUQ A;  1E1D A;  2F7P A;  1UPX A;  1HXK A;  1Y2O A;  2X3V A;  1O7D B;  3EJS A;  2PY6 A;  3BUD A;  2QKW A;  4JWC A;  3I39 X;  4AZC A;  3FD9 A;  1OA0 A;  3KDR A;  2YLL A;  4NQI A;  1DKZ A;  3EJQ A;  2F7O A;  2GAF D;  4WPC A;  4EZR A;  2EWF A;  4AZ7 A;  3D4Y A;  4IM2 A;  3HAI A;  5FIG A;  4B9Q A;  3T46 A;  2F1A A;  4JWE A;  2F1B A;  3EJP A;  1SU6 A;  4E3C A;  1QWU A;  2YL9 A;  4IWQ A;  4EZW A;  4KIK B;  4I1Q A;  2EFL A;  1TQV A;  3BVV A;  4JWI A;  4EZZ A;  3DX4 A;  3I04 A;  2ZXQ A;  2RAK A;  3OK8 A;  2YL8 A;  3ER8 C;  2OO2 A;  4H8S A;  2YI8 A;  4JLC A;  3T4A G;  4D8J A;  1WDZ A;  2WYH A;  3L3P A;  3D2F A;  3VEA A; 
#chains in the Genus database with same CATH homology
 4JN4 A;  2KHO A;  3LMF A;  4NPH A;  4FM3 A;  4IWO A;  4JNE A;  4H6H A;  1ZYL A;  4R5G A;  1OAO A;  3D2E A;  4M0M A;  2WIN M;  1DKX A;  4EZX A;  4R5I A;  4EZP A;  2RT6 A;  3RV1 A;  4PO2 A;  1E2U A;  2NCZ A;  3DPO A;  2OBL A;  3O3O B;  3UIT A;  2ND0 A;  3B53 X;  3QA8 A;  3T48 A;  3L3O M;  1E1D A;  4HR1 B;  3I01 A;  1UPX A;  5E84 A;  4R5L A;  3T49 A;  3OWG A;  2GA9 D;  4KIK A;  3RV0 A;  2PY6 A;  4JWC A;  3I39 X;  3GI7 A;  4UDX X;  4F00 A;  4EZN A;  3DPQ A;  2YIB A;  1SU8 A;  3FD9 A;  1MJG A;  2QXL A;  4E81 A;  1OA0 A;  2ND1 A;  3KAW A;  3QNJ A;  3O3M B;  3KDR A;  4HYB A;  2QFF A;  4EZV A;  1E9V A;  4IM0 A;  1DKZ A;  3C7N A;  4EZS A;  4JWD A;  3ERC C;  2GAF D;  1OA1 A;  4JL9 A;  2X5C A;  3VEB A;  1GNL A;  1SUF A;  4HR1 A;  4R5J A;  4F01 A;  2EWF A;  4EZR A;  3ZED A;  2Z8Y A;  1SU7 A;  2OBM A;  3VKH A;  4IM2 A;  5FIG A;  4B9Q A;  3T46 A;  1W9M A;  4JWE A;  4EZQ A;  4EZO A;  1SU6 A;  2YIV X;  4E3C A;  3DPP A;  4IWQ A;  4EZW A;  3O3N B;  4KIK B;  4IM3 A;  4EZY A;  1JQK A;  2LM0 A;  2N3K A;  4EZU A;  4EZT A;  4HY9 A;  2EX3 B;  4R5K A;  4JWI A;  4EZZ A;  4UDY X;  5TKY A;  2YIA A;  3B52 X;  4JNF A;  3I04 A;  3T47 A;  3B51 X;  3F7W A;  4G6Q A;  4IW0 A;  1GNT A;  2YI9 A;  3ER8 C;  3KAV A;  2YI8 A;  1GN9 A;  1U00 A;  4H6I A;  4JLC A;  3A98 A;  5FLE X;  3T4A G;  3ER9 B;  4D8J A;  4IWP A;  1DKY A;  2JNS A;  3OHX M;  3D2F A;  3VEA A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...