3KAVA

Crystal structure of the mutant (l80m) pa2107 protein from pseudomonas aeruginosa, northeast structural genomics consortium target par198
Total Genus 43
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
43
sequence length
102
structure length
102
Chain Sequence
AAQAPEERCRLAAQACIRACERYLALCTESSREQRQHAGDCADLCRLAALLMERRSPWAPAACELAARYALACAERCDGDEPLERECAGACRRFVEACRPLL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Structural genomics, unknown function
molecule keywords uncharacterized protein PA2107
publication title Northeast Structural Genomics Consortium Target PaR198
rcsb
source organism Pseudomonas aeruginosa
total genus 43
structure length 102
sequence length 102
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2009-10-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03860 DUF326 Domain of Unknown Function (DUF326)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1270.360 Mainly Alpha Up-down Bundle Substrate Binding Domain Of Dnak; Chain:A; Domain 2 Substrate Binding Domain Of Dnak; Chain:A; Domain 2 3kavA00
3KAVA 3LMFA 3KAWA 5FIGA
chains in the Genus database with same CATH superfamily
2V0OA 3QE6A 2GAFD 2GA9D 3BVXA 1OAOA 1QWNA 4FZOA 2Z0VA 1X03A 1SU6A 4NPHA 1TQWA 3BUDA 4IM0A 4DYLA 1GNLA 4ATMA 3QWEA 2F1AA 4JWDA 3BLBA 3KDRA 1DKZA 3ABHA 3CV5A 2YI9A 2F1BA 2EWFA 5C5BB 4JWIA 4H6HA 2MI7A 3O3NB 3EJUA 4R5IA 4M0MA 1MJGA 1I4LA 4AZCB 3BUPA 3D4YA 4UDXX 3T47A 2YIAA 1GN9A 2X3WA 1DKXA 1TQUA 4AZGA 1TQTA 4IWPA 2YIVX 5C5BA 4AZIA 1OA1A 2F18A 3KAWA 3UITA 1TQVA 1R5EA 1I4TA 4E81A 3RPMA 4EZRA 1ZYLA 3BVVA 3T49A 2F7PA 4EZOA 4AZCA 4NQIA 4JNEA 4AVMA 1UPXA 2X3VA 4IWQA 2YIBA 1HTYA 1I4DA 2QFFA 3F7WA 3D51A 4EZVA 1HWWA 3DDFA 4EZXA 3DX0A 4E3CA 2OZNB 3DPQA 3BUQA 1ZWWA 4G6QA 3O3MB 3D4ZA 4JN4A 4H8SA 1I49A 3BVTA 2WYIA 3DPPA 3B51X 4UDYX 4EZUA 5FLEX 4NSWA 4AZHA 3VEBA 2QKWA 3LMFA 2Z0NA 4AKVA 2LXYA 2N3KA 3CKDA 1E9VA 2YLLA 4AZBA 2YL6A 1E2UA 1R33A 3ER8C 3OHXM 1WDZA 4EZZA 2JNSA 2YL9A 3BVWA 4FZPA 4PO2A 4HY9A 4WPCA 3DX3A 4IW0A 3BUIA 2YLAA 3LVTA 1Y2OA 2RAIA 1LQ7A 3L3PA 1SU7A 3T46A 3KAVA 2D1LA 2F7RA 5E84A 3ERCC 3BVUA 4EZTA 2EFLA 2X3XA 2FICA 4EZQA 3EJRA 3HAIA 2KHOA 3EJTA 4EZSA 1QWUA 1X04A 2GF4A 4IM2A 4H6IA 3DDGA 2Z8YA 1GNTA 1SUFA 4HYBA 3B52X 4R5GA 3VEAA 2ND1A 2YI8A 4D8JA 3B53X 2EX3B 4EZPA 3HAJA 2F7OA 1E1DA 1O7DB 3T48A 3CAZA 3Q84A 2RAKA 5KBPA 2ELBA 2OW7A 1DKYA 2PMRA 4DCNC 3I04A 3EJPA 3ER9B 4KIKB 3D50A 2Q13A 2ALWA 3EJSA 2X5CA 3Q0KA 3PLTA 2ZXQA 1OA0A 3I01A 3I2WA 3SOGA 1O7DC 1SU8A 3D2FA 1W9MA 3CZNA 1HXKA 3VKHA 4B9QA 4I1QA 2YL8A 2NCZA 3CZSA 3M3WA 2YKTA 2YL5A 3OK8A 4KIKA 3CVRA 3GI7A 3ZEDA 4WPEA 3DX2A 3RV0A 2RT6A 2FYVA 5TKYA 4FM3A 3D52A 1U00A 3D2EA 2C08A 2OBMA 3DX4A 3QNIA 2JNKA 2O0I1 4AZ5A 3L3OM 1PS3A 4IM3A 4EZYA 2OBLA 3I39X 3G9GA 4IWOA 4AZ7A 3FD9A 4JWEA 4JNFA 2QXLA 2F7QA 3LLLA 4JLCA 2LM0A 4F00A 2Z0OA 3RV1A 1JQKA 2D4CA 4HR1B 4FZSA 2RAJA 2PY6A 3OWGA 4AZ6A 3BUBA 2WYHA 3C7NA 4EZNA 1YWMA 4F01A 2Q12A 3DPOA 4R5JA 1TQSA 4JL9A 3QNJA 4BNEA 4R5LA 4HR1A 3DX1A 1URUA 3ACOA 2OO2A 3EJQA 1R34A 4R5KA 3QA8A 5FIGA 2ND0A 2OW6A 3DYTA 4EZWA 2EFKA 3HAHA 3SYVA 3O3OB 3T4AG 4JWCA 3A98A 1QX1A 2WINM
chains in the Genus database with same CATH topology
3D2EA 4HYBA 3B52X 4R5GA 3DPQA 2GAFD 2OBMA 2GA9D 3L3OM 1OAOA 4G6QA 3O3MB 3VEAA 2ND1A 1SU6A 4NPHA 4JN4A 4IM0A 2YI8A 4IM3A 4EZYA 2OBLA 3I39X 1GNLA 3DPPA 4D8JA 3B51X 3B53X 4UDYX 4EZUA 2EX3B 4IWOA 4JWDA 5FLEX 4EZPA 3KDRA 3VEBA 3FD9A 1DKZA 4JWEA 3LMFA 1E1DA 4JNFA 2YI9A 2QXLA 3T48A 4JLCA 2N3KA 1E9VA 2EWFA 2LM0A 4JWIA 4F00A 4H6HA 3O3NB 1DKYA 3RV1A 1JQKA 4HR1B 1E2UA 4R5IA 4M0MA 3I04A 3ER9B 3ER8C 3OHXM 4KIKB 1MJGA 2PY6A 3OWGA 4EZZA 2JNSA 4UDXX 3C7NA 4EZNA 3T47A 1GNTA 2X5CA 4F01A 2YIAA 4PO2A 1GN9A 1OA0A 3I01A 1DKXA 4HY9A 3DPOA 4R5JA 4IW0A 4JL9A 3QNJA 1SU8A 3D2FA 1W9MA 4IWPA 2YIVX 4R5LA 3VKHA 1OA1A 3KAWA 3UITA 4B9QA 1SU7A 3T46A 2NCZA 3KAVA 4HR1A 5E84A 4E81A 3ERCC 4EZTA 4KIKA 4EZRA 1ZYLA 3T49A 4R5KA 4EZQA 3QA8A 4EZOA 5FIGA 2ND0A 4JNEA 1UPXA 3GI7A 2KHOA 3ZEDA 4IWQA 3RV0A 2YIBA 4EZSA 4EZWA 2RT6A 2QFFA 3F7WA 5TKYA 3O3OB 4EZVA 4FM3A 4IM2A 3T4AG 4JWCA 3A98A 1U00A 4EZXA 4H6IA 4E3CA 2Z8YA 2WINM 1SUFA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3KAV A;  3LMF A;  3KAW A;  5FIG A; 
#chains in the Genus database with same CATH topology
 2V0O A;  3QE6 A;  2GAF D;  2GA9 D;  3BVX A;  1OAO A;  1QWN A;  4FZO A;  2Z0V A;  1X03 A;  1SU6 A;  4NPH A;  1TQW A;  3BUD A;  4IM0 A;  4DYL A;  1GNL A;  4ATM A;  3QWE A;  2F1A A;  4JWD A;  3BLB A;  3KDR A;  1DKZ A;  3ABH A;  3CV5 A;  2YI9 A;  2F1B A;  2EWF A;  5C5B B;  4JWI A;  4H6H A;  2MI7 A;  3O3N B;  3EJU A;  4R5I A;  4M0M A;  1MJG A;  1I4L A;  4AZC B;  3BUP A;  3D4Y A;  4UDX X;  3T47 A;  2YIA A;  1GN9 A;  2X3W A;  1DKX A;  1TQU A;  4AZG A;  1TQT A;  4IWP A;  2YIV X;  5C5B A;  4AZI A;  1OA1 A;  2F18 A;  3KAW A;  3UIT A;  1TQV A;  1R5E A;  1I4T A;  4E81 A;  3RPM A;  4EZR A;  1ZYL A;  3BVV A;  3T49 A;  2F7P A;  4EZO A;  4AZC A;  4NQI A;  4JNE A;  4AVM A;  1UPX A;  2X3V A;  4IWQ A;  2YIB A;  1HTY A;  1I4D A;  2QFF A;  3F7W A;  3D51 A;  4EZV A;  1HWW A;  3DDF A;  4EZX A;  3DX0 A;  4E3C A;  2OZN B;  3DPQ A;  3BUQ A;  1ZWW A;  4G6Q A;  3O3M B;  3D4Z A;  4JN4 A;  4H8S A;  1I49 A;  3BVT A;  2WYI A;  3DPP A;  3B51 X;  4UDY X;  4EZU A;  5FLE X;  4NSW A;  4AZH A;  3VEB A;  2QKW A;  3LMF A;  2Z0N A;  4AKV A;  2LXY A;  2N3K A;  3CKD A;  1E9V A;  2YLL A;  4AZB A;  2YL6 A;  1E2U A;  1R33 A;  3ER8 C;  3OHX M;  1WDZ A;  4EZZ A;  2JNS A;  2YL9 A;  3BVW A;  4FZP A;  4PO2 A;  4HY9 A;  4WPC A;  3DX3 A;  4IW0 A;  3BUI A;  2YLA A;  3LVT A;  1Y2O A;  2RAI A;  1LQ7 A;  3L3P A;  1SU7 A;  3T46 A;  3KAV A;  2D1L A;  2F7R A;  5E84 A;  3ERC C;  3BVU A;  4EZT A;  2EFL A;  2X3X A;  2FIC A;  4EZQ A;  3EJR A;  3HAI A;  2KHO A;  3EJT A;  4EZS A;  1QWU A;  1X04 A;  2GF4 A;  4IM2 A;  4H6I A;  3DDG A;  2Z8Y A;  1GNT A;  1SUF A;  4HYB A;  3B52 X;  4R5G A;  3VEA A;  2ND1 A;  2YI8 A;  4D8J A;  3B53 X;  2EX3 B;  4EZP A;  3HAJ A;  2F7O A;  1E1D A;  1O7D B;  3T48 A;  3CAZ A;  3Q84 A;  2RAK A;  5KBP A;  2ELB A;  2OW7 A;  1DKY A;  2PMR A;  4DCN C;  3I04 A;  3EJP A;  3ER9 B;  4KIK B;  3D50 A;  2Q13 A;  2ALW A;  3EJS A;  2X5C A;  3Q0K A;  3PLT A;  2ZXQ A;  1OA0 A;  3I01 A;  3I2W A;  3SOG A;  1O7D C;  1SU8 A;  3D2F A;  1W9M A;  3CZN A;  1HXK A;  3VKH A;  4B9Q A;  4I1Q A;  2YL8 A;  2NCZ A;  3CZS A;  3M3W A;  2YKT A;  2YL5 A;  3OK8 A;  4KIK A;  3CVR A;  3GI7 A;  3ZED A;  4WPE A;  3DX2 A;  3RV0 A;  2RT6 A;  2FYV A;  5TKY A;  4FM3 A;  3D52 A;  1U00 A;  3D2E A;  2C08 A;  2OBM A;  3DX4 A;  3QNI A;  2JNK A;  2O0I 1;  4AZ5 A;  3L3O M;  1PS3 A;  4IM3 A;  4EZY A;  2OBL A;  3I39 X;  3G9G A;  4IWO A;  4AZ7 A;  3FD9 A;  4JWE A;  4JNF A;  2QXL A;  2F7Q A;  3LLL A;  4JLC A;  2LM0 A;  4F00 A;  2Z0O A;  3RV1 A;  1JQK A;  2D4C A;  4HR1 B;  4FZS A;  2RAJ A;  2PY6 A;  3OWG A;  4AZ6 A;  3BUB A;  2WYH A;  3C7N A;  4EZN A;  1YWM A;  4F01 A;  2Q12 A;  3DPO A;  4R5J A;  1TQS A;  4JL9 A;  3QNJ A;  4BNE A;  4R5L A;  4HR1 A;  3DX1 A;  1URU A;  3ACO A;  2OO2 A;  3EJQ A;  1R34 A;  4R5K A;  3QA8 A;  5FIG A;  2ND0 A;  2OW6 A;  3DYT A;  4EZW A;  2EFK A;  3HAH A;  3SYV A;  3O3O B;  3T4A G;  4JWC A;  3A98 A;  1QX1 A;  2WIN M; 
#chains in the Genus database with same CATH homology
 3D2E A;  4HYB A;  3B52 X;  4R5G A;  3DPQ A;  2GAF D;  2OBM A;  2GA9 D;  3L3O M;  1OAO A;  4G6Q A;  3O3M B;  3VEA A;  2ND1 A;  1SU6 A;  4NPH A;  4JN4 A;  4IM0 A;  2YI8 A;  4IM3 A;  4EZY A;  2OBL A;  3I39 X;  1GNL A;  3DPP A;  4D8J A;  3B51 X;  3B53 X;  4UDY X;  4EZU A;  2EX3 B;  4IWO A;  4JWD A;  5FLE X;  4EZP A;  3KDR A;  3VEB A;  3FD9 A;  1DKZ A;  4JWE A;  3LMF A;  1E1D A;  4JNF A;  2YI9 A;  2QXL A;  3T48 A;  4JLC A;  2N3K A;  1E9V A;  2EWF A;  2LM0 A;  4JWI A;  4F00 A;  4H6H A;  3O3N B;  1DKY A;  3RV1 A;  1JQK A;  4HR1 B;  1E2U A;  4R5I A;  4M0M A;  3I04 A;  3ER9 B;  3ER8 C;  3OHX M;  4KIK B;  1MJG A;  2PY6 A;  3OWG A;  4EZZ A;  2JNS A;  4UDX X;  3C7N A;  4EZN A;  3T47 A;  1GNT A;  2X5C A;  4F01 A;  2YIA A;  4PO2 A;  1GN9 A;  1OA0 A;  3I01 A;  1DKX A;  4HY9 A;  3DPO A;  4R5J A;  4IW0 A;  4JL9 A;  3QNJ A;  1SU8 A;  3D2F A;  1W9M A;  4IWP A;  2YIV X;  4R5L A;  3VKH A;  1OA1 A;  3KAW A;  3UIT A;  4B9Q A;  1SU7 A;  3T46 A;  2NCZ A;  3KAV A;  4HR1 A;  5E84 A;  4E81 A;  3ERC C;  4EZT A;  4KIK A;  4EZR A;  1ZYL A;  3T49 A;  4R5K A;  4EZQ A;  3QA8 A;  4EZO A;  5FIG A;  2ND0 A;  4JNE A;  1UPX A;  3GI7 A;  2KHO A;  3ZED A;  4IWQ A;  3RV0 A;  2YIB A;  4EZS A;  4EZW A;  2RT6 A;  2QFF A;  3F7W A;  5TKY A;  3O3O B;  4EZV A;  4FM3 A;  4IM2 A;  3T4A G;  4JWC A;  3A98 A;  1U00 A;  4EZX A;  4H6I A;  4E3C A;  2Z8Y A;  2WIN M;  1SUF A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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