3I2WA

Crystal structure of efc/f-bar domain of drosophila syndapin/pacsin
Total Genus 111
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
111
sequence length
290
structure length
270
Chain Sequence
SDSFWEPGNYKRTTKRIEDGYKLCNDLQQLIQERADIEKGYAKSLRTWSKKWGELIEKGPEYGTTEAAWKGVLTESERISDVHMKIKDNLCNDVNSQIKTWQKENYHHTLMQIKERKDLEDLFKKAQKPWAKLLAKVEKAKADYHSACKTERSATHDRVQKTKDQVQKCREKYEQAIAEITKYNSVYIEDMTSVFEKCQTFEKTRLQFFKEILFNVHSCLDLTKVQSLPQIYEEFSHTINNADQQKDLKWWSNNHGINMAMNWPSFVEYT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Endocytosis
source organism Drosophila melanogaster
publication title Structural requirements for PACSIN/Syndapin operation during zebrafish embryonic notochord development.
pubmed doi rcsb
molecule keywords Syndapin
total genus 111
structure length 270
sequence length 290
chains with identical sequence B
ec nomenclature
pdb deposition date 2009-06-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00611 FCH Fes/CIP4, and EFC/F-BAR homology domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1270.60 Mainly Alpha Up-down Bundle Substrate Binding Domain Of Dnak; Chain:A; Domain 2 Arfaptin homology (AH) domain/BAR domain 3i2wA01
2EFKA 3HAHA 2Q12A 3G9GA 4DCNC 3QE6A 4BNEA 2FICA 4DYLA 2D1LA 2Q13A 2RAKA 4NQIA 2Z0VA 2Z0OA 1X03A 3CAZA 2X3WA 4AVMA 3Q84A 4FZSA 3Q0KA 4H8SA 4WPEA 2C08A 1ZWWA 2ELBA 1I49A 4NSWA 3HAJA 3SYVA 1X04A 5C5BB 3ABHA 3QWEA 3I2WA 2RAJA 3DYTA 3HAIA 1I4LA 3QNIA 3LLLA 3M3WA 3OK8A 3PLTA 3ACOA 2X3VA 1WDZA 1I4DA 2EFLA 4WPCA 2Z0NA 2YKTA 4ATMA 2RAIA 4AKVA 2D4CA 4I1QA 1URUA 1Y2OA 2V0OA 1I4TA 2X3XA 3SOGA 5C5BA
chains in the Genus database with same CATH superfamily
2WINM 4D8JA 2YIAA 2Z0VA 3BUPA 3OWGA 1R33A 4WPEA 2YI8A 2OW7A 3DPQA 1X04A 4JNFA 4EZYA 3B53X 2RAJA 4R5GA 4JL9A 1WDZA 2YIBA 1MJGA 2YL9A 4HR1B 4AZ5A 3CAZA 2F7PA 3Q0KA 4H8SA 1OA1A 2C08A 3O3MB 4EZUA 2WYIA 3CKDA 2X3VA 4EZXA 2EFLA 2Z0NA 2GAFD 3F7WA 4JWDA 4E81A 5C5BA 2PY6A 2GA9D 3DDGA 3RPMA 1X03A 3B52X 4FZSA 1UPXA 4R5JA 3DX4A 5C5BB 4FM3A 1I4LA 2N3KA 1R34A 2PMRA 2OO2A 4UDYX 2YKTA 4EZWA 3SOGA 4E3CA 3UITA 4JWEA 3VEAA 4R5IA 4EZSA 4H6IA 3DPOA 3D51A 2O0I1 3I01A 2ND0A 3ABHA 2YI9A 2QFFA 2ZXQA 2D4CA 3HAHA 4IM2A 2YL5A 3ERCC 3RV1A 3T48A 3BUBA 1DKYA 3DYTA 3KDRA 4AZ6A 1OA0A 1OAOA 4FZOA 3EJPA 3G9GA 4EZOA 3EJUA 1PS3A 3LMFA 3C7NA 2F1AA 3BUDA 2LM0A 4HR1A 3LLLA 2QXLA 3CV5A 5FLEX 3O3NB 1E9VA 3ZEDA 3QE6A 2FICA 3BVXA 3Q84A 3EJSA 2ELBA 1I49A 4EZTA 4R5LA 1R5EA 1GN9A 3FD9A 4WPCA 4AKVA 4KIKA 4EZPA 1SU8A 4I1QA 2X3XA 4B9QA 2ND1A 2EX3B 3DPPA 3BUIA 2GF4A 3EJTA 3DX1A 4KIKB 4R5KA 4F01A 3QNIA 2YIVX 2F7OA 3CZSA 2RAIA 1TQUA 1U00A 4IWOA 3DDFA 4AZBA 3I39X 2Q13A 4NQIA 2Z0OA 3BVTA 3VEBA 2RT6A 2EWFA 1E2UA 4IM3A 3QWEA 2LXYA 4H6HA 3HAIA 2F7QA 3DX0A 4IWQA 3VKHA 3D4YA 1I4DA 4NPHA 4AZCA 4F00A 3CVRA 3DX2A 4DYLA 1GNLA 1GNTA 1SU7A 2X3WA 1SU6A 3T49A 1QWUA 3RV0A 4AZCB 3D52A 3T47A 3BVWA 5TKYA 1QWNA 3BVUA 1YWMA 3A98A 4IM0A 1TQVA 4ATMA 1Y2OA 1I4TA 3EJRA 3KAVA 4AVMA 4M0MA 3I04A 3SYVA 3B51X 2YLAA 2NCZA 1DKXA 2V0OA 4HYBA 3BUQA 2QKWA 1O7DB 1TQSA 2F18A 5E84A 1HWWA 2OBLA 3HAJA 3BVVA 5KBPA 4JN4A 1O7DC 1DKZA 3DX3A 2YL8A 3M3WA 3QNJA 5FIGA 2Q12A 3ER8C 1W9MA 4AZGA 3ER9B 4EZQA 3GI7A 3BLBA 2KHOA 2YLLA 4PO2A 2WYHA 2F7RA 2OBMA 1LQ7A 4JNEA 1HXKA 4FZPA 3CZNA 4EZZA 3OHXM 4JLCA 3D50A 3KAWA 1SUFA 4BNEA 3L3PA 2RAKA 1HTYA 4EZVA 3I2WA 3LVTA 2X5CA 2JNSA 4AZHA 1E1DA 3T4AG 2F1BA 4AZ7A 4DCNC 3D4ZA 4EZRA 4NSWA 4AZIA 2MI7A 3PLTA 1ZYLA 4JWIA 4IW0A 4IWPA 3D2EA 4UDXX 3QA8A 2EFKA 4JWCA 3D2FA 2D1LA 2YL6A 2OW6A 1TQWA 3EJQA 2FYVA 4EZNA 1ZWWA 2JNKA 1QX1A 2ALWA 1JQKA 3L3OM 1TQTA 2OZNB 3OK8A 3T46A 3ACOA 2Z8YA 4HY9A 4G6QA 1URUA 3O3OB
chains in the Genus database with same CATH topology
2EFKA 3HAHA 2Q12A 3G9GA 4DCNC 3QE6A 4BNEA 2FICA 4DYLA 2D1LA 2Q13A 2RAKA 4NQIA 2Z0VA 2Z0OA 1X03A 3CAZA 2X3WA 4AVMA 3Q84A 4FZSA 3Q0KA 4H8SA 4WPEA 2C08A 1ZWWA 2ELBA 1I49A 4NSWA 3HAJA 3SYVA 1X04A 5C5BB 3ABHA 3QWEA 3I2WA 2RAJA 3DYTA 3HAIA 1I4LA 3QNIA 3LLLA 3M3WA 3OK8A 3PLTA 3ACOA 2X3VA 1WDZA 1I4DA 2EFLA 4WPCA 2Z0NA 2YKTA 4ATMA 2RAIA 4AKVA 2D4CA 4I1QA 1URUA 1Y2OA 2V0OA 1I4TA 2X3XA 3SOGA 5C5BA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2EFK A;  3HAH A;  2Q12 A;  3G9G A;  4DCN C;  3QE6 A;  4BNE A;  2FIC A;  4DYL A;  2D1L A;  2Q13 A;  2RAK A;  4NQI A;  2Z0V A;  2Z0O A;  1X03 A;  3CAZ A;  2X3W A;  4AVM A;  3Q84 A;  4FZS A;  3Q0K A;  4H8S A;  4WPE A;  2C08 A;  1ZWW A;  2ELB A;  1I49 A;  4NSW A;  3HAJ A;  3SYV A;  1X04 A;  5C5B B;  3ABH A;  3QWE A;  3I2W A;  2RAJ A;  3DYT A;  3HAI A;  1I4L A;  3QNI A;  3LLL A;  3M3W A;  3OK8 A;  3PLT A;  3ACO A;  2X3V A;  1WDZ A;  1I4D A;  2EFL A;  4WPC A;  2Z0N A;  2YKT A;  4ATM A;  2RAI A;  4AKV A;  2D4C A;  4I1Q A;  1URU A;  1Y2O A;  2V0O A;  1I4T A;  2X3X A;  3SOG A;  5C5B A; 
#chains in the Genus database with same CATH topology
 2WIN M;  4D8J A;  2YIA A;  2Z0V A;  3BUP A;  3OWG A;  1R33 A;  4WPE A;  2YI8 A;  2OW7 A;  3DPQ A;  1X04 A;  4JNF A;  4EZY A;  3B53 X;  2RAJ A;  4R5G A;  4JL9 A;  1WDZ A;  2YIB A;  1MJG A;  2YL9 A;  4HR1 B;  4AZ5 A;  3CAZ A;  2F7P A;  3Q0K A;  4H8S A;  1OA1 A;  2C08 A;  3O3M B;  4EZU A;  2WYI A;  3CKD A;  2X3V A;  4EZX A;  2EFL A;  2Z0N A;  2GAF D;  3F7W A;  4JWD A;  4E81 A;  5C5B A;  2PY6 A;  2GA9 D;  3DDG A;  3RPM A;  1X03 A;  3B52 X;  4FZS A;  1UPX A;  4R5J A;  3DX4 A;  5C5B B;  4FM3 A;  1I4L A;  2N3K A;  1R34 A;  2PMR A;  2OO2 A;  4UDY X;  2YKT A;  4EZW A;  3SOG A;  4E3C A;  3UIT A;  4JWE A;  3VEA A;  4R5I A;  4EZS A;  4H6I A;  3DPO A;  3D51 A;  2O0I 1;  3I01 A;  2ND0 A;  3ABH A;  2YI9 A;  2QFF A;  2ZXQ A;  2D4C A;  3HAH A;  4IM2 A;  2YL5 A;  3ERC C;  3RV1 A;  3T48 A;  3BUB A;  1DKY A;  3DYT A;  3KDR A;  4AZ6 A;  1OA0 A;  1OAO A;  4FZO A;  3EJP A;  3G9G A;  4EZO A;  3EJU A;  1PS3 A;  3LMF A;  3C7N A;  2F1A A;  3BUD A;  2LM0 A;  4HR1 A;  3LLL A;  2QXL A;  3CV5 A;  5FLE X;  3O3N B;  1E9V A;  3ZED A;  3QE6 A;  2FIC A;  3BVX A;  3Q84 A;  3EJS A;  2ELB A;  1I49 A;  4EZT A;  4R5L A;  1R5E A;  1GN9 A;  3FD9 A;  4WPC A;  4AKV A;  4KIK A;  4EZP A;  1SU8 A;  4I1Q A;  2X3X A;  4B9Q A;  2ND1 A;  2EX3 B;  3DPP A;  3BUI A;  2GF4 A;  3EJT A;  3DX1 A;  4KIK B;  4R5K A;  4F01 A;  3QNI A;  2YIV X;  2F7O A;  3CZS A;  2RAI A;  1TQU A;  1U00 A;  4IWO A;  3DDF A;  4AZB A;  3I39 X;  2Q13 A;  4NQI A;  2Z0O A;  3BVT A;  3VEB A;  2RT6 A;  2EWF A;  1E2U A;  4IM3 A;  3QWE A;  2LXY A;  4H6H A;  3HAI A;  2F7Q A;  3DX0 A;  4IWQ A;  3VKH A;  3D4Y A;  1I4D A;  4NPH A;  4AZC A;  4F00 A;  3CVR A;  3DX2 A;  4DYL A;  1GNL A;  1GNT A;  1SU7 A;  2X3W A;  1SU6 A;  3T49 A;  1QWU A;  3RV0 A;  4AZC B;  3D52 A;  3T47 A;  3BVW A;  5TKY A;  1QWN A;  3BVU A;  1YWM A;  3A98 A;  4IM0 A;  1TQV A;  4ATM A;  1Y2O A;  1I4T A;  3EJR A;  3KAV A;  4AVM A;  4M0M A;  3I04 A;  3SYV A;  3B51 X;  2YLA A;  2NCZ A;  1DKX A;  2V0O A;  4HYB A;  3BUQ A;  2QKW A;  1O7D B;  1TQS A;  2F18 A;  5E84 A;  1HWW A;  2OBL A;  3HAJ A;  3BVV A;  5KBP A;  4JN4 A;  1O7D C;  1DKZ A;  3DX3 A;  2YL8 A;  3M3W A;  3QNJ A;  5FIG A;  2Q12 A;  3ER8 C;  1W9M A;  4AZG A;  3ER9 B;  4EZQ A;  3GI7 A;  3BLB A;  2KHO A;  2YLL A;  4PO2 A;  2WYH A;  2F7R A;  2OBM A;  1LQ7 A;  4JNE A;  1HXK A;  4FZP A;  3CZN A;  4EZZ A;  3OHX M;  4JLC A;  3D50 A;  3KAW A;  1SUF A;  4BNE A;  3L3P A;  2RAK A;  1HTY A;  4EZV A;  3I2W A;  3LVT A;  2X5C A;  2JNS A;  4AZH A;  1E1D A;  3T4A G;  2F1B A;  4AZ7 A;  4DCN C;  3D4Z A;  4EZR A;  4NSW A;  4AZI A;  2MI7 A;  3PLT A;  1ZYL A;  4JWI A;  4IW0 A;  4IWP A;  3D2E A;  4UDX X;  3QA8 A;  2EFK A;  4JWC A;  3D2F A;  2D1L A;  2YL6 A;  2OW6 A;  1TQW A;  3EJQ A;  2FYV A;  4EZN A;  1ZWW A;  2JNK A;  1QX1 A;  2ALW A;  1JQK A;  3L3O M;  1TQT A;  2OZN B;  3OK8 A;  3T46 A;  3ACO A;  2Z8Y A;  4HY9 A;  4G6Q A;  1URU A;  3O3O B; 
#chains in the Genus database with same CATH homology
 2EFK A;  3HAH A;  2Q12 A;  3G9G A;  4DCN C;  3QE6 A;  4BNE A;  2FIC A;  4DYL A;  2D1L A;  2Q13 A;  2RAK A;  4NQI A;  2Z0V A;  2Z0O A;  1X03 A;  3CAZ A;  2X3W A;  4AVM A;  3Q84 A;  4FZS A;  3Q0K A;  4H8S A;  4WPE A;  2C08 A;  1ZWW A;  2ELB A;  1I49 A;  4NSW A;  3HAJ A;  3SYV A;  1X04 A;  5C5B B;  3ABH A;  3QWE A;  3I2W A;  2RAJ A;  3DYT A;  3HAI A;  1I4L A;  3QNI A;  3LLL A;  3M3W A;  3OK8 A;  3PLT A;  3ACO A;  2X3V A;  1WDZ A;  1I4D A;  2EFL A;  4WPC A;  2Z0N A;  2YKT A;  4ATM A;  2RAI A;  4AKV A;  2D4C A;  4I1Q A;  1URU A;  1Y2O A;  2V0O A;  1I4T A;  2X3X A;  3SOG A;  5C5B A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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