3GI7A

Crystal structure of a duf1311 family protein (pp0307) from pseudomonas putida kt2440 at 1.85 a resolution
Total Genus 44
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
44
sequence length
103
structure length
103
Chain Sequence
NVETDQQTFACAAFNKQVAERELQSAYDELIERMRDQFGDEAGLMSRIEAAEKVWSQLRDADCKVETHAEQPGSNAYQIAWNSCIAQRSDERAEYLRSLGSQN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Unknown function
molecule keywords Secreted protein of unknown function DUF1311
publication title Crystal structure of secreted protein of unknown function (DUF1311) (NP_742474.1) from Pseudomonas putida KT2440 at 1.85 A resolution
rcsb
source organism Pseudomonas putida
total genus 44
structure length 103
sequence length 103
chains with identical sequence B
ec nomenclature
pdb deposition date 2009-03-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF07007 LprI Lysozyme inhibitor LprI
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1270.180 Mainly Alpha Up-down Bundle Substrate Binding Domain Of Dnak; Chain:A; Domain 2 Substrate Binding Domain Of Dnak; Chain:A; Domain 2 3gi7A00
3GI7A
chains in the Genus database with same CATH superfamily
2OZNB 3D2FA 3DX3A 3Q84A 4UDYX 3A98A 4JL9A 3B53X 4NPHA 3C7NA 3QNIA 2FYVA 4KIKB 4FZSA 2OW7A 4AKVA 3T46A 1GNLA 4AZGA 2YLLA 2OW6A 2WYIA 1I49A 4JN4A 2Q12A 3BUIA 1SUFA 4JNFA 2RT6A 2RAIA 5E84A 3ZEDA 5KBPA 3D51A 2YIVX 4NSWA 1Y2OA 2Z8YA 5FIGA 2YKTA 2QKWA 3EJTA 1R5EA 3BVXA 1DKXA 2YIBA 3QWEA 3QE6A 1TQUA 2F7OA 2OBLA 3BUQA 3O3MB 3ACOA 4HR1A 3CV5A 2QFFA 1OA1A 1I4TA 4M0MA 4EZRA 3B52X 3DDFA 4EZOA 3BLBA 3ABHA 4UDXX 1ZYLA 2YLAA 4EZVA 3KAVA 4JWIA 4DYLA 3RV0A 1X03A 1X04A 4AZ6A 3I04A 2YL6A 3KAWA 5C5BA 3DDGA 4AZ7A 4IWOA 2Z0OA 3CVRA 3EJUA 1DKZA 1TQVA 2F1AA 4H6HA 3EJSA 3L3OM 3VEAA 4HR1B 2X3WA 3HAIA 2WYHA 4H6IA 1HXKA 3B51X 4G6QA 1UPXA 3BUBA 3BVVA 2Q13A 4FZOA 2ELBA 3PLTA 4IM3A 4H8SA 4EZZA 2ALWA 1QWNA 1LQ7A 2FICA 4EZQA 2ND1A 3BVWA 3HAJA 3CZNA 3LMFA 3D2EA 2F18A 1TQWA 4AZ5A 4AZBA 1JQKA 1DKYA 3T47A 2X3XA 4E3CA 2WINM 2GF4A 3G9GA 1GNTA 2EWFA 4D8JA 1OAOA 2Z0NA 4R5JA 1E2UA 3T4AG 1QX1A 2ND0A 3ER8C 1SU8A 2F1BA 3HAHA 4WPCA 2EFLA 1SU7A 3QA8A 4R5LA 4R5GA 4AZIA 2F7QA 2N3KA 1HWWA 3GI7A 1R33A 2YI8A 4R5KA 4EZWA 3M3WA 4IM0A 2EFKA 2F7RA 2GAFD 3BUPA 2V0OA 2EX3B 2MI7A 3D50A 3UITA 2X3VA 3DX2A 3I01A 1O7DC 3O3OB 3T49A 1URUA 3VEBA 4HYBA 1E1DA 3T48A 4JLCA 4EZPA 3LVTA 2OBMA 3DX1A 2JNKA 4EZXA 2OO2A 3OHXM 2YI9A 2PY6A 3EJQA 3DPOA 3D4YA 3CAZA 2YL9A 2YL5A 3RPMA 3CZSA 4IWPA 3DPPA 4DCNC 1TQSA 3SYVA 2PMRA 2LM0A 5FLEX 3I39X 2GA9D 3ERCC 3BVUA 3Q0KA 1QWUA 3CKDA 4EZTA 4AZCA 5C5BB 1YWMA 1R34A 4EZSA 1GN9A 4IW0A 4F00A 2JNSA 2X5CA 1I4DA 4AZHA 4ATMA 4EZYA 2YIAA 4JWCA 3D52A 4NQIA 1PS3A 3KDRA 4F01A 5TKYA 1SU6A 4FM3A 3OWGA 4IM2A 2YL8A 3SOGA 4AZCB 4EZUA 1MJGA 1W9MA 2KHOA 3BVTA 2D1LA 3QNJA 1I4LA 1HTYA 2LXYA 3RV1A 1O7DB 3I2WA 3VKHA 2NCZA 3EJRA 4JWEA 2Z0VA 3DYTA 3DX0A 3D4ZA 4FZPA 4I1QA 3LLLA 3DPQA 4WPEA 3O3NB 3L3PA 3BUDA 4JWDA 4PO2A 1ZWWA 2ZXQA 4JNEA 4R5IA 4HY9A 4E81A 3ER9B 1TQTA 1WDZA 2QXLA 4KIKA 4IWQA 1OA0A 3OK8A 4AVMA 4BNEA 3FD9A 1U00A 2D4CA 2C08A 4B9QA 4EZNA 3EJPA 2O0I1 1E9VA 2RAJA 3F7WA 2RAKA 2F7PA 3DX4A
chains in the Genus database with same CATH topology
2JNSA 3D2FA 4EZVA 2X5CA 3KAVA 4JWIA 4UDYX 3A98A 4JL9A 3B53X 3RV0A 1SU7A 3QA8A 4EZYA 2YIAA 4R5LA 4NPHA 4R5GA 3C7NA 3I04A 4JWCA 2N3KA 3KAWA 3GI7A 4IWOA 3KDRA 4F01A 4KIKB 5TKYA 1SU6A 4FM3A 2YI8A 4R5KA 3OWGA 4EZWA 4IM2A 1DKZA 4H6HA 4IM0A 3L3OM 3T46A 3VEAA 2GAFD 2EX3B 3UITA 4HR1B 1GNLA 4H6IA 4EZUA 3B51X 3I01A 1MJGA 1W9MA 2KHOA 4G6QA 3QNJA 1UPXA 3O3OB 4F00A 3T49A 4JN4A 3RV1A 3VEBA 4HYBA 1E1DA 4JNFA 1SUFA 3T48A 4JLCA 4EZPA 3VKHA 2RT6A 2NCZA 4JWEA 5E84A 3ZEDA 4IM3A 4EZZA 2OBMA 3DPQA 3O3NB 4EZXA 4EZQA 2ND1A 4JWDA 2YIVX 4PO2A 3OHXM 2Z8YA 2YI9A 2PY6A 3LMFA 3DPOA 5FIGA 4JNEA 4R5IA 3D2EA 4HY9A 4E81A 3ER9B 1JQKA 3DPPA 4IWPA 1DKXA 1DKYA 2YIBA 3T47A 2QXLA 4KIKA 4E3CA 4IWQA 2LM0A 2WINM 1OA0A 5FLEX 2OBLA 1GNTA 3I39X 2GA9D 3O3MB 3ERCC 4EZTA 2EWFA 4D8JA 3FD9A 1OAOA 1U00A 4HR1A 2QFFA 4R5JA 1E2UA 4B9QA 1OA1A 4M0MA 4EZRA 3B52X 3T4AG 4EZNA 4EZOA 4EZSA 1E9VA 1GN9A 2ND0A 4UDXX 1ZYLA 3F7WA 4IW0A 3ER8C 1SU8A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3GI7 A; 
#chains in the Genus database with same CATH topology
 2OZN B;  3D2F A;  3DX3 A;  3Q84 A;  4UDY X;  3A98 A;  4JL9 A;  3B53 X;  4NPH A;  3C7N A;  3QNI A;  2FYV A;  4KIK B;  4FZS A;  2OW7 A;  4AKV A;  3T46 A;  1GNL A;  4AZG A;  2YLL A;  2OW6 A;  2WYI A;  1I49 A;  4JN4 A;  2Q12 A;  3BUI A;  1SUF A;  4JNF A;  2RT6 A;  2RAI A;  5E84 A;  3ZED A;  5KBP A;  3D51 A;  2YIV X;  4NSW A;  1Y2O A;  2Z8Y A;  5FIG A;  2YKT A;  2QKW A;  3EJT A;  1R5E A;  3BVX A;  1DKX A;  2YIB A;  3QWE A;  3QE6 A;  1TQU A;  2F7O A;  2OBL A;  3BUQ A;  3O3M B;  3ACO A;  4HR1 A;  3CV5 A;  2QFF A;  1OA1 A;  1I4T A;  4M0M A;  4EZR A;  3B52 X;  3DDF A;  4EZO A;  3BLB A;  3ABH A;  4UDX X;  1ZYL A;  2YLA A;  4EZV A;  3KAV A;  4JWI A;  4DYL A;  3RV0 A;  1X03 A;  1X04 A;  4AZ6 A;  3I04 A;  2YL6 A;  3KAW A;  5C5B A;  3DDG A;  4AZ7 A;  4IWO A;  2Z0O A;  3CVR A;  3EJU A;  1DKZ A;  1TQV A;  2F1A A;  4H6H A;  3EJS A;  3L3O M;  3VEA A;  4HR1 B;  2X3W A;  3HAI A;  2WYH A;  4H6I A;  1HXK A;  3B51 X;  4G6Q A;  1UPX A;  3BUB A;  3BVV A;  2Q13 A;  4FZO A;  2ELB A;  3PLT A;  4IM3 A;  4H8S A;  4EZZ A;  2ALW A;  1QWN A;  1LQ7 A;  2FIC A;  4EZQ A;  2ND1 A;  3BVW A;  3HAJ A;  3CZN A;  3LMF A;  3D2E A;  2F18 A;  1TQW A;  4AZ5 A;  4AZB A;  1JQK A;  1DKY A;  3T47 A;  2X3X A;  4E3C A;  2WIN M;  2GF4 A;  3G9G A;  1GNT A;  2EWF A;  4D8J A;  1OAO A;  2Z0N A;  4R5J A;  1E2U A;  3T4A G;  1QX1 A;  2ND0 A;  3ER8 C;  1SU8 A;  2F1B A;  3HAH A;  4WPC A;  2EFL A;  1SU7 A;  3QA8 A;  4R5L A;  4R5G A;  4AZI A;  2F7Q A;  2N3K A;  1HWW A;  3GI7 A;  1R33 A;  2YI8 A;  4R5K A;  4EZW A;  3M3W A;  4IM0 A;  2EFK A;  2F7R A;  2GAF D;  3BUP A;  2V0O A;  2EX3 B;  2MI7 A;  3D50 A;  3UIT A;  2X3V A;  3DX2 A;  3I01 A;  1O7D C;  3O3O B;  3T49 A;  1URU A;  3VEB A;  4HYB A;  1E1D A;  3T48 A;  4JLC A;  4EZP A;  3LVT A;  2OBM A;  3DX1 A;  2JNK A;  4EZX A;  2OO2 A;  3OHX M;  2YI9 A;  2PY6 A;  3EJQ A;  3DPO A;  3D4Y A;  3CAZ A;  2YL9 A;  2YL5 A;  3RPM A;  3CZS A;  4IWP A;  3DPP A;  4DCN C;  1TQS A;  3SYV A;  2PMR A;  2LM0 A;  5FLE X;  3I39 X;  2GA9 D;  3ERC C;  3BVU A;  3Q0K A;  1QWU A;  3CKD A;  4EZT A;  4AZC A;  5C5B B;  1YWM A;  1R34 A;  4EZS A;  1GN9 A;  4IW0 A;  4F00 A;  2JNS A;  2X5C A;  1I4D A;  4AZH A;  4ATM A;  4EZY A;  2YIA A;  4JWC A;  3D52 A;  4NQI A;  1PS3 A;  3KDR A;  4F01 A;  5TKY A;  1SU6 A;  4FM3 A;  3OWG A;  4IM2 A;  2YL8 A;  3SOG A;  4AZC B;  4EZU A;  1MJG A;  1W9M A;  2KHO A;  3BVT A;  2D1L A;  3QNJ A;  1I4L A;  1HTY A;  2LXY A;  3RV1 A;  1O7D B;  3I2W A;  3VKH A;  2NCZ A;  3EJR A;  4JWE A;  2Z0V A;  3DYT A;  3DX0 A;  3D4Z A;  4FZP A;  4I1Q A;  3LLL A;  3DPQ A;  4WPE A;  3O3N B;  3L3P A;  3BUD A;  4JWD A;  4PO2 A;  1ZWW A;  2ZXQ A;  4JNE A;  4R5I A;  4HY9 A;  4E81 A;  3ER9 B;  1TQT A;  1WDZ A;  2QXL A;  4KIK A;  4IWQ A;  1OA0 A;  3OK8 A;  4AVM A;  4BNE A;  3FD9 A;  1U00 A;  2D4C A;  2C08 A;  4B9Q A;  4EZN A;  3EJP A;  2O0I 1;  1E9V A;  2RAJ A;  3F7W A;  2RAK A;  2F7P A;  3DX4 A; 
#chains in the Genus database with same CATH homology
 2JNS A;  3D2F A;  4EZV A;  2X5C A;  3KAV A;  4JWI A;  4UDY X;  3A98 A;  4JL9 A;  3B53 X;  3RV0 A;  1SU7 A;  3QA8 A;  4EZY A;  2YIA A;  4R5L A;  4NPH A;  4R5G A;  3C7N A;  3I04 A;  4JWC A;  2N3K A;  3KAW A;  3GI7 A;  4IWO A;  3KDR A;  4F01 A;  4KIK B;  5TKY A;  1SU6 A;  4FM3 A;  2YI8 A;  4R5K A;  3OWG A;  4EZW A;  4IM2 A;  1DKZ A;  4H6H A;  4IM0 A;  3L3O M;  3T46 A;  3VEA A;  2GAF D;  2EX3 B;  3UIT A;  4HR1 B;  1GNL A;  4H6I A;  4EZU A;  3B51 X;  3I01 A;  1MJG A;  1W9M A;  2KHO A;  4G6Q A;  3QNJ A;  1UPX A;  3O3O B;  4F00 A;  3T49 A;  4JN4 A;  3RV1 A;  3VEB A;  4HYB A;  1E1D A;  4JNF A;  1SUF A;  3T48 A;  4JLC A;  4EZP A;  3VKH A;  2RT6 A;  2NCZ A;  4JWE A;  5E84 A;  3ZED A;  4IM3 A;  4EZZ A;  2OBM A;  3DPQ A;  3O3N B;  4EZX A;  4EZQ A;  2ND1 A;  4JWD A;  2YIV X;  4PO2 A;  3OHX M;  2Z8Y A;  2YI9 A;  2PY6 A;  3LMF A;  3DPO A;  5FIG A;  4JNE A;  4R5I A;  3D2E A;  4HY9 A;  4E81 A;  3ER9 B;  1JQK A;  3DPP A;  4IWP A;  1DKX A;  1DKY A;  2YIB A;  3T47 A;  2QXL A;  4KIK A;  4E3C A;  4IWQ A;  2LM0 A;  2WIN M;  1OA0 A;  5FLE X;  2OBL A;  1GNT A;  3I39 X;  2GA9 D;  3O3M B;  3ERC C;  4EZT A;  2EWF A;  4D8J A;  3FD9 A;  1OAO A;  1U00 A;  4HR1 A;  2QFF A;  4R5J A;  1E2U A;  4B9Q A;  1OA1 A;  4M0M A;  4EZR A;  3B52 X;  3T4A G;  4EZN A;  4EZO A;  4EZS A;  1E9V A;  1GN9 A;  2ND0 A;  4UDX X;  1ZYL A;  3F7W A;  4IW0 A;  3ER8 C;  1SU8 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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