3GI7A

Crystal structure of a duf1311 family protein (pp0307) from pseudomonas putida kt2440 at 1.85 a resolution
Total Genus 44
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
44
sequence length
103
structure length
103
Chain Sequence
NVETDQQTFACAAFNKQVAERELQSAYDELIERMRDQFGDEAGLMSRIEAAEKVWSQLRDADCKVETHAEQPGSNAYQIAWNSCIAQRSDERAEYLRSLGSQN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Secreted protein of unknown function DUF1311
publication title Crystal structure of secreted protein of unknown function (DUF1311) (NP_742474.1) from Pseudomonas putida KT2440 at 1.85 A resolution
rcsb
source organism Pseudomonas putida
molecule tags Unknown function
total genus 44
structure length 103
sequence length 103
chains with identical sequence B
ec nomenclature
pdb deposition date 2009-03-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF07007 LprI Lysozyme inhibitor LprI
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1270.180 Mainly Alpha Up-down Bundle Substrate Binding Domain Of Dnak; Chain:A; Domain 2 Substrate Binding Domain Of Dnak; Chain:A; Domain 2 3gi7A00
3GI7A
chains in the Genus database with same CATH superfamily
1WDZA 4AZCA 2WINM 3D51A 2RT6A 4H6IA 3BVUA 1DKYA 2OW7A 3OHXM 3L3OM 1SU7A 1X03A 4DYLA 2OW6A 1JQKA 1E2UA 2Z0VA 4IWQA 4D8JA 4PO2A 3BVXA 5KBPA 1MJGA 2Q13A 3I39X 3CKDA 4EZTA 4R5GA 4G6QA 3DPPA 2WYHA 4JL9A 2YI8A 1QWNA 4FZPA 2Z8YA 1R33A 2ELBA 4AKVA 4EZZA 4IM0A 2GAFD 4JN4A 3ERCC 4HY9A 3DX3A 3T4AG 2F1AA 1QX1A 4UDYX 3D4ZA 3RV1A 5TKYA 2LM0A 3DDGA 2WYIA 3VKHA 4B9QA 4NQIA 3RPMA 4WPEA 3QWEA 4EZVA 3CV5A 1URUA 2YIVX 1HWWA 1I4TA 4JWDA 5C5BA 2D1LA 2V0OA 4EZRA 3I2WA 3QE6A 2GA9D 2Q12A 2RAJA 2YL8A 3LMFA 2EFLA 1LQ7A 1GNLA 3RV0A 3T47A 2F7PA 2YL5A 3BUQA 3FD9A 3HAHA 3T48A 3L3PA 2F7OA 2X5CA 1I49A 2YKTA 4UDXX 2YIBA 4FZOA 1R5EA 3HAJA 3KAVA 3LVTA 4R5JA 2QFFA 4F01A 2F18A 4AZIA 3T46A 3ZEDA 3QA8A 4E81A 2ND1A 2JNKA 2FYVA 1SU6A 2ZXQA 4R5KA 3OWGA 4AZ5A 3D4YA 4ATMA 2OBMA 3DYTA 2FICA 4DCNC 3VEBA 3DPOA 4KIKB 1E9VA 5FLEX 1SU8A 3DX2A 2X3XA 3BLBA 3I04A 4EZNA 3D50A 4H6HA 1O7DC 4IW0A 1Y2OA 3SYVA 3C7NA 2LXYA 2ND0A 4EZUA 3D2EA 3O3NB 2O0I1 1DKZA 4JWCA 3A98A 4R5LA 1I4LA 3EJPA 2YLLA 3EJRA 2X3WA 1ZWWA 5E84A 3D2FA 3UITA 1HTYA 3EJTA 3BUPA 4E3CA 3G9GA 1PS3A 4KIKA 1E1DA 4HR1B 2RAKA 3B53X 2EFKA 2YIAA 3DX4A 1TQVA 4EZOA 1GN9A 1TQUA 4IWOA 3BUDA 4EZPA 4M0MA 3F7WA 3SOGA 2F1BA 2C08A 2Z0NA 3VEAA 3KDRA 4AZBA 1HXKA 4AZHA 1QWUA 1TQWA 4AZ7A 3DX0A 1OAOA 3CZSA 4FM3A 2PY6A 2X3VA 2OO2A 4AVMA 4I1QA 2YL9A 1I4DA 3B52X 3EJSA 4HR1A 1W9MA 4EZWA 3PLTA 1U00A 3HAIA 4R5IA 1TQSA 1OA1A 2QKWA 3EJQA 3ER9B 1ZYLA 2YL6A 1YWMA 3I01A 2NCZA 2YI9A 1X04A 2ALWA 3CZNA 3CAZA 4IWPA 1UPXA 2D4CA 3O3MB 3Q84A 5C5BB 4EZQA 3KAWA 4JNEA 4EZYA 3EJUA 2OBLA 4NPHA 4JWIA 3ABHA 2RAIA 4HYBA 4AZGA 3LLLA 3B51X 3BUIA 3DX1A 4NSWA 2Z0OA 3BVTA 3QNIA 1DKXA 3CVRA 1OA0A 4JNFA 2YLAA 3QNJA 2F7QA 4JWEA 3BUBA 4IM3A 3GI7A 4AZ6A 4H8SA 3OK8A 4AZCB 1R34A 1O7DB 4EZXA 4EZSA 1GNTA 2F7RA 4FZSA 3BVWA 2PMRA 3DPQA 3T49A 2EX3B 2MI7A 2JNSA 2OZNB 4IM2A 2N3KA 3BVVA 3ER8C 1TQTA 3D52A 2GF4A 3O3OB 5FIGA 2QXLA 2EWFA 4JLCA 4BNEA 3ACOA 4WPCA 3M3WA 1SUFA 3Q0KA 4F00A 3DDFA 2KHOA
chains in the Genus database with same CATH topology
3O3MB 5E84A 3D2FA 3UITA 3FD9A 4EZQA 2WINM 3T48A 2RT6A 3KAWA 4H6IA 4JNEA 1DKYA 4E3CA 3OHXM 4EZYA 2X5CA 3L3OM 1SU7A 4UDXX 4KIKA 2OBLA 4NPHA 1E1DA 1JQKA 1E2UA 2YIBA 4HR1B 4JWIA 3KAVA 3B53X 4IWQA 4D8JA 4PO2A 4HYBA 4R5JA 1MJGA 2YIAA 3I39X 3B51X 2QFFA 4EZTA 4F01A 4R5GA 3T46A 1DKXA 3ZEDA 4EZOA 1GN9A 1OA0A 4G6QA 4IWOA 3DPPA 4JNFA 4JL9A 4EZPA 3QNJA 4JWEA 2YI8A 3QA8A 4M0MA 4E81A 2ND1A 2Z8YA 3F7WA 4IM3A 3GI7A 1SU6A 4EZZA 4IM0A 2GAFD 4R5KA 3VEAA 3OWGA 4JN4A 3KDRA 3ERCC 4EZXA 4HY9A 3T4AG 2OBMA 4UDYX 4EZSA 1GNTA 1OAOA 3RV1A 3VEBA 3DPOA 4KIKB 4FM3A 2PY6A 1E9VA 5FLEX 1SU8A 5TKYA 2LM0A 3I04A 4EZNA 3B52X 3VKHA 3DPQA 4B9QA 4H6HA 3T49A 2EX3B 2JNSA 4IW0A 4IM2A 3C7NA 4HR1A 4EZVA 2N3KA 1W9MA 4EZWA 2ND0A 4EZUA 3D2EA 3ER8C 1U00A 3O3NB 4R5IA 1DKZA 2YIVX 4JWCA 1OA1A 3ER9B 3A98A 1ZYLA 3O3OB 4JWDA 4R5LA 5FIGA 2QXLA 2EWFA 4JLCA 4EZRA 2GA9D 1SUFA 3LMFA 3I01A 4F00A 2NCZA 2YI9A 1GNLA 3RV0A 4IWPA 1UPXA 3T47A 2KHOA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3GI7 A; 
#chains in the Genus database with same CATH topology
 1WDZ A;  4AZC A;  2WIN M;  3D51 A;  2RT6 A;  4H6I A;  3BVU A;  1DKY A;  2OW7 A;  3OHX M;  3L3O M;  1SU7 A;  1X03 A;  4DYL A;  2OW6 A;  1JQK A;  1E2U A;  2Z0V A;  4IWQ A;  4D8J A;  4PO2 A;  3BVX A;  5KBP A;  1MJG A;  2Q13 A;  3I39 X;  3CKD A;  4EZT A;  4R5G A;  4G6Q A;  3DPP A;  2WYH A;  4JL9 A;  2YI8 A;  1QWN A;  4FZP A;  2Z8Y A;  1R33 A;  2ELB A;  4AKV A;  4EZZ A;  4IM0 A;  2GAF D;  4JN4 A;  3ERC C;  4HY9 A;  3DX3 A;  3T4A G;  2F1A A;  1QX1 A;  4UDY X;  3D4Z A;  3RV1 A;  5TKY A;  2LM0 A;  3DDG A;  2WYI A;  3VKH A;  4B9Q A;  4NQI A;  3RPM A;  4WPE A;  3QWE A;  4EZV A;  3CV5 A;  1URU A;  2YIV X;  1HWW A;  1I4T A;  4JWD A;  5C5B A;  2D1L A;  2V0O A;  4EZR A;  3I2W A;  3QE6 A;  2GA9 D;  2Q12 A;  2RAJ A;  2YL8 A;  3LMF A;  2EFL A;  1LQ7 A;  1GNL A;  3RV0 A;  3T47 A;  2F7P A;  2YL5 A;  3BUQ A;  3FD9 A;  3HAH A;  3T48 A;  3L3P A;  2F7O A;  2X5C A;  1I49 A;  2YKT A;  4UDX X;  2YIB A;  4FZO A;  1R5E A;  3HAJ A;  3KAV A;  3LVT A;  4R5J A;  2QFF A;  4F01 A;  2F18 A;  4AZI A;  3T46 A;  3ZED A;  3QA8 A;  4E81 A;  2ND1 A;  2JNK A;  2FYV A;  1SU6 A;  2ZXQ A;  4R5K A;  3OWG A;  4AZ5 A;  3D4Y A;  4ATM A;  2OBM A;  3DYT A;  2FIC A;  4DCN C;  3VEB A;  3DPO A;  4KIK B;  1E9V A;  5FLE X;  1SU8 A;  3DX2 A;  2X3X A;  3BLB A;  3I04 A;  4EZN A;  3D50 A;  4H6H A;  1O7D C;  4IW0 A;  1Y2O A;  3SYV A;  3C7N A;  2LXY A;  2ND0 A;  4EZU A;  3D2E A;  3O3N B;  2O0I 1;  1DKZ A;  4JWC A;  3A98 A;  4R5L A;  1I4L A;  3EJP A;  2YLL A;  3EJR A;  2X3W A;  1ZWW A;  5E84 A;  3D2F A;  3UIT A;  1HTY A;  3EJT A;  3BUP A;  4E3C A;  3G9G A;  1PS3 A;  4KIK A;  1E1D A;  4HR1 B;  2RAK A;  3B53 X;  2EFK A;  2YIA A;  3DX4 A;  1TQV A;  4EZO A;  1GN9 A;  1TQU A;  4IWO A;  3BUD A;  4EZP A;  4M0M A;  3F7W A;  3SOG A;  2F1B A;  2C08 A;  2Z0N A;  3VEA A;  3KDR A;  4AZB A;  1HXK A;  4AZH A;  1QWU A;  1TQW A;  4AZ7 A;  3DX0 A;  1OAO A;  3CZS A;  4FM3 A;  2PY6 A;  2X3V A;  2OO2 A;  4AVM A;  4I1Q A;  2YL9 A;  1I4D A;  3B52 X;  3EJS A;  4HR1 A;  1W9M A;  4EZW A;  3PLT A;  1U00 A;  3HAI A;  4R5I A;  1TQS A;  1OA1 A;  2QKW A;  3EJQ A;  3ER9 B;  1ZYL A;  2YL6 A;  1YWM A;  3I01 A;  2NCZ A;  2YI9 A;  1X04 A;  2ALW A;  3CZN A;  3CAZ A;  4IWP A;  1UPX A;  2D4C A;  3O3M B;  3Q84 A;  5C5B B;  4EZQ A;  3KAW A;  4JNE A;  4EZY A;  3EJU A;  2OBL A;  4NPH A;  4JWI A;  3ABH A;  2RAI A;  4HYB A;  4AZG A;  3LLL A;  3B51 X;  3BUI A;  3DX1 A;  4NSW A;  2Z0O A;  3BVT A;  3QNI A;  1DKX A;  3CVR A;  1OA0 A;  4JNF A;  2YLA A;  3QNJ A;  2F7Q A;  4JWE A;  3BUB A;  4IM3 A;  3GI7 A;  4AZ6 A;  4H8S A;  3OK8 A;  4AZC B;  1R34 A;  1O7D B;  4EZX A;  4EZS A;  1GNT A;  2F7R A;  4FZS A;  3BVW A;  2PMR A;  3DPQ A;  3T49 A;  2EX3 B;  2MI7 A;  2JNS A;  2OZN B;  4IM2 A;  2N3K A;  3BVV A;  3ER8 C;  1TQT A;  3D52 A;  2GF4 A;  3O3O B;  5FIG A;  2QXL A;  2EWF A;  4JLC A;  4BNE A;  3ACO A;  4WPC A;  3M3W A;  1SUF A;  3Q0K A;  4F00 A;  3DDF A;  2KHO A; 
#chains in the Genus database with same CATH homology
 3O3M B;  5E84 A;  3D2F A;  3UIT A;  3FD9 A;  4EZQ A;  2WIN M;  3T48 A;  2RT6 A;  3KAW A;  4H6I A;  4JNE A;  1DKY A;  4E3C A;  3OHX M;  4EZY A;  2X5C A;  3L3O M;  1SU7 A;  4UDX X;  4KIK A;  2OBL A;  4NPH A;  1E1D A;  1JQK A;  1E2U A;  2YIB A;  4HR1 B;  4JWI A;  3KAV A;  3B53 X;  4IWQ A;  4D8J A;  4PO2 A;  4HYB A;  4R5J A;  1MJG A;  2YIA A;  3I39 X;  3B51 X;  2QFF A;  4EZT A;  4F01 A;  4R5G A;  3T46 A;  1DKX A;  3ZED A;  4EZO A;  1GN9 A;  1OA0 A;  4G6Q A;  4IWO A;  3DPP A;  4JNF A;  4JL9 A;  4EZP A;  3QNJ A;  4JWE A;  2YI8 A;  3QA8 A;  4M0M A;  4E81 A;  2ND1 A;  2Z8Y A;  3F7W A;  4IM3 A;  3GI7 A;  1SU6 A;  4EZZ A;  4IM0 A;  2GAF D;  4R5K A;  3VEA A;  3OWG A;  4JN4 A;  3KDR A;  3ERC C;  4EZX A;  4HY9 A;  3T4A G;  2OBM A;  4UDY X;  4EZS A;  1GNT A;  1OAO A;  3RV1 A;  3VEB A;  3DPO A;  4KIK B;  4FM3 A;  2PY6 A;  1E9V A;  5FLE X;  1SU8 A;  5TKY A;  2LM0 A;  3I04 A;  4EZN A;  3B52 X;  3VKH A;  3DPQ A;  4B9Q A;  4H6H A;  3T49 A;  2EX3 B;  2JNS A;  4IW0 A;  4IM2 A;  3C7N A;  4HR1 A;  4EZV A;  2N3K A;  1W9M A;  4EZW A;  2ND0 A;  4EZU A;  3D2E A;  3ER8 C;  1U00 A;  3O3N B;  4R5I A;  1DKZ A;  2YIV X;  4JWC A;  1OA1 A;  3ER9 B;  3A98 A;  1ZYL A;  3O3O B;  4JWD A;  4R5L A;  5FIG A;  2QXL A;  2EWF A;  4JLC A;  4EZR A;  2GA9 D;  1SUF A;  3LMF A;  3I01 A;  4F00 A;  2NCZ A;  2YI9 A;  1GNL A;  3RV0 A;  4IWP A;  1UPX A;  3T47 A;  2KHO A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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