1LQ7A

De novo designed protein model of radical enzymes
Total Genus 18
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
18
sequence length
67
structure length
67
Chain Sequence
GSRVKALEEKVKALEEKVKALGGGGRIEELKKKWEELKKKIEELGGGGEVKKVEEEVKKLEEEIKKL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Alpha3W
publication title Structure of a De Novo Designed Protein Model of Radical Enzymes
pubmed doi rcsb
molecule tags De novo protein
total genus 18
structure length 67
sequence length 67
ec nomenclature
pdb deposition date 2002-05-09
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1270.70 Mainly Alpha Up-down Bundle Substrate Binding Domain Of Dnak; Chain:A; Domain 2 Designed single chain three-helix bundle 1lq7A00
2ZXQA 2MI7A 2LXYA 1LQ7A
chains in the Genus database with same CATH superfamily
3D52A 1OAOA 3RV0A 2ND0A 2F18A 2EFLA 3LVTA 3T47A 3QA8A 2EWFA 1I4DA 1SU8A 1QWNA 4EZRA 2V0OA 2PMRA 4IW0A 2F7RA 3BUDA 1YWMA 3BVXA 4HY9A 2YLLA 4AZCA 3DX2A 4AZHA 1UPXA 1O7DB 4JNEA 2ALWA 3D2FA 1TQTA 2X3WA 3CZSA 4JWDA 1TQUA 1GN9A 3O3OB 4AZGA 4HYBA 4G6QA 3DDGA 2QKWA 2LM0A 4JWCA 4F01A 3D50A 4IM3A 4AVMA 2Z0OA 4AZIA 2ND1A 3B53X 3KAWA 3BLBA 1E9VA 3Q0KA 4PO2A 4R5GA 3BVTA 2KHOA 2ZXQA 2D1LA 2QFFA 3HAHA 2FICA 2YIVX 4JWEA 4EZQA 3CZNA 3L3PA 4EZXA 2YL8A 1DKXA 3A98A 4WPEA 4HR1B 3DX3A 3T48A 2YKTA 3D4YA 3DDFA 4FM3A 3DX4A 3SYVA 1I4TA 1TQVA 4IWOA 3BUBA 4M0MA 1ZWWA 3ZEDA 3O3MB 1GNLA 4AZCB 1URUA 4EZOA 4EZNA 3SOGA 3ABHA 2F1AA 3CVRA 3DPQA 3EJPA 1R5EA 3EJQA 4UDXX 1OA1A 3I2WA 3ERCC 3L3OM 3LLLA 4AZ7A 3CV5A 2MI7A 1DKYA 3OHXM 2QXLA 3PLTA 4IM2A 2YL6A 2JNSA 3VEBA 5FLEX 3KDRA 4EZTA 3EJTA 1X04A 2FYVA 5TKYA 5FIGA 1SU7A 2GF4A 2Z8YA 3G9GA 5C5BA 4KIKA 2PY6A 4FZSA 1ZYLA 4AKVA 3T46A 3CKDA 2Z0NA 1Y2OA 2OBMA 4IWPA 2EX3B 4JN4A 3ER9B 3DX0A 3I01A 1LQ7A 1HWWA 2Z0VA 3DPPA 2YL9A 2RT6A 3ACOA 1SUFA 3D51A 3I04A 4R5IA 2O0I1 5E84A 2C08A 4H6IA 4E3CA 3OK8A 2F1BA 4E81A 3Q84A 2Q13A 3BVWA 4F00A 4NSWA 3EJSA 3UITA 1X03A 5KBPA 1R33A 2YI9A 4H6HA 4FZOA 3DX1A 4R5KA 1HXKA 3HAIA 4AZ5A 2RAJA 3T49A 2F7QA 3BVUA 3FD9A 4DCNC 2ELBA 3DYTA 4EZWA 2NCZA 1TQSA 1QX1A 2X3XA 3VKHA 3VEAA 3EJRA 5C5BB 4IM0A 2RAIA 1GNTA 4KIKB 4BNEA 4FZPA 4DYLA 3C7NA 2YIAA 1JQKA 4HR1A 3GI7A 2F7PA 1TQWA 2YLAA 4NPHA 2OZNB 4EZSA 3O3NB 3B51X 1E1DA 3HAJA 2WYHA 1QWUA 4AZ6A 2Q12A 3D2EA 3M3WA 4D8JA 4JWIA 3CAZA 4ATMA 3BUIA 2D4CA 3D4ZA 1E2UA 3BUQA 2RAKA 1WDZA 1W9MA 2X3VA 4IWQA 3RV1A 1I4LA 1I49A 4NQIA 1SU6A 4JNFA 3KAVA 2YI8A 1U00A 3DPOA 3QWEA 4UDYX 2LXYA 4EZVA 2GA9D 2OBLA 2F7OA 2X5CA 1OA0A 3QE6A 1O7DC 4JL9A 3LMFA 4R5JA 2JNKA 4EZYA 3I39X 4EZUA 2EFKA 4AZBA 2OO2A 3EJUA 3F7WA 3BVVA 1R34A 3T4AG 4H8SA 3ER8C 2WINM 2OW6A 3RPMA 1MJGA 4R5LA 2GAFD 2YL5A 3QNIA 3B52X 2WYIA 4EZPA 3BUPA 2N3KA 4JLCA 1DKZA 4I1QA 4WPCA 2OW7A 3OWGA 1HTYA 2YIBA 4B9QA 4EZZA 1PS3A 3QNJA
chains in the Genus database with same CATH topology
2ZXQA 2MI7A 2LXYA 1LQ7A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2ZXQ A;  2MI7 A;  2LXY A;  1LQ7 A; 
#chains in the Genus database with same CATH topology
 3D52 A;  1OAO A;  3RV0 A;  2ND0 A;  2F18 A;  2EFL A;  3LVT A;  3T47 A;  3QA8 A;  2EWF A;  1I4D A;  1SU8 A;  1QWN A;  4EZR A;  2V0O A;  2PMR A;  4IW0 A;  2F7R A;  3BUD A;  1YWM A;  3BVX A;  4HY9 A;  2YLL A;  4AZC A;  3DX2 A;  4AZH A;  1UPX A;  1O7D B;  4JNE A;  2ALW A;  3D2F A;  1TQT A;  2X3W A;  3CZS A;  4JWD A;  1TQU A;  1GN9 A;  3O3O B;  4AZG A;  4HYB A;  4G6Q A;  3DDG A;  2QKW A;  2LM0 A;  4JWC A;  4F01 A;  3D50 A;  4IM3 A;  4AVM A;  2Z0O A;  4AZI A;  2ND1 A;  3B53 X;  3KAW A;  3BLB A;  1E9V A;  3Q0K A;  4PO2 A;  4R5G A;  3BVT A;  2KHO A;  2ZXQ A;  2D1L A;  2QFF A;  3HAH A;  2FIC A;  2YIV X;  4JWE A;  4EZQ A;  3CZN A;  3L3P A;  4EZX A;  2YL8 A;  1DKX A;  3A98 A;  4WPE A;  4HR1 B;  3DX3 A;  3T48 A;  2YKT A;  3D4Y A;  3DDF A;  4FM3 A;  3DX4 A;  3SYV A;  1I4T A;  1TQV A;  4IWO A;  3BUB A;  4M0M A;  1ZWW A;  3ZED A;  3O3M B;  1GNL A;  4AZC B;  1URU A;  4EZO A;  4EZN A;  3SOG A;  3ABH A;  2F1A A;  3CVR A;  3DPQ A;  3EJP A;  1R5E A;  3EJQ A;  4UDX X;  1OA1 A;  3I2W A;  3ERC C;  3L3O M;  3LLL A;  4AZ7 A;  3CV5 A;  2MI7 A;  1DKY A;  3OHX M;  2QXL A;  3PLT A;  4IM2 A;  2YL6 A;  2JNS A;  3VEB A;  5FLE X;  3KDR A;  4EZT A;  3EJT A;  1X04 A;  2FYV A;  5TKY A;  5FIG A;  1SU7 A;  2GF4 A;  2Z8Y A;  3G9G A;  5C5B A;  4KIK A;  2PY6 A;  4FZS A;  1ZYL A;  4AKV A;  3T46 A;  3CKD A;  2Z0N A;  1Y2O A;  2OBM A;  4IWP A;  2EX3 B;  4JN4 A;  3ER9 B;  3DX0 A;  3I01 A;  1LQ7 A;  1HWW A;  2Z0V A;  3DPP A;  2YL9 A;  2RT6 A;  3ACO A;  1SUF A;  3D51 A;  3I04 A;  4R5I A;  2O0I 1;  5E84 A;  2C08 A;  4H6I A;  4E3C A;  3OK8 A;  2F1B A;  4E81 A;  3Q84 A;  2Q13 A;  3BVW A;  4F00 A;  4NSW A;  3EJS A;  3UIT A;  1X03 A;  5KBP A;  1R33 A;  2YI9 A;  4H6H A;  4FZO A;  3DX1 A;  4R5K A;  1HXK A;  3HAI A;  4AZ5 A;  2RAJ A;  3T49 A;  2F7Q A;  3BVU A;  3FD9 A;  4DCN C;  2ELB A;  3DYT A;  4EZW A;  2NCZ A;  1TQS A;  1QX1 A;  2X3X A;  3VKH A;  3VEA A;  3EJR A;  5C5B B;  4IM0 A;  2RAI A;  1GNT A;  4KIK B;  4BNE A;  4FZP A;  4DYL A;  3C7N A;  2YIA A;  1JQK A;  4HR1 A;  3GI7 A;  2F7P A;  1TQW A;  2YLA A;  4NPH A;  2OZN B;  4EZS A;  3O3N B;  3B51 X;  1E1D A;  3HAJ A;  2WYH A;  1QWU A;  4AZ6 A;  2Q12 A;  3D2E A;  3M3W A;  4D8J A;  4JWI A;  3CAZ A;  4ATM A;  3BUI A;  2D4C A;  3D4Z A;  1E2U A;  3BUQ A;  2RAK A;  1WDZ A;  1W9M A;  2X3V A;  4IWQ A;  3RV1 A;  1I4L A;  1I49 A;  4NQI A;  1SU6 A;  4JNF A;  3KAV A;  2YI8 A;  1U00 A;  3DPO A;  3QWE A;  4UDY X;  2LXY A;  4EZV A;  2GA9 D;  2OBL A;  2F7O A;  2X5C A;  1OA0 A;  3QE6 A;  1O7D C;  4JL9 A;  3LMF A;  4R5J A;  2JNK A;  4EZY A;  3I39 X;  4EZU A;  2EFK A;  4AZB A;  2OO2 A;  3EJU A;  3F7W A;  3BVV A;  1R34 A;  3T4A G;  4H8S A;  3ER8 C;  2WIN M;  2OW6 A;  3RPM A;  1MJG A;  4R5L A;  2GAF D;  2YL5 A;  3QNI A;  3B52 X;  2WYI A;  4EZP A;  3BUP A;  2N3K A;  4JLC A;  1DKZ A;  4I1Q A;  4WPC A;  2OW7 A;  3OWG A;  1HTY A;  2YIB A;  4B9Q A;  4EZZ A;  1PS3 A;  3QNJ A; 
#chains in the Genus database with same CATH homology
 2ZXQ A;  2MI7 A;  2LXY A;  1LQ7 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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