1LQ7A

De novo designed protein model of radical enzymes
Total Genus 18
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
18
sequence length
67
structure length
67
Chain Sequence
GSRVKALEEKVKALEEKVKALGGGGRIEELKKKWEELKKKIEELGGGGEVKKVEEEVKKLEEEIKKL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags De novo protein
molecule keywords Alpha3W
publication title Structure of a De Novo Designed Protein Model of Radical Enzymes
pubmed doi rcsb
total genus 18
structure length 67
sequence length 67
ec nomenclature
pdb deposition date 2002-05-09
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1270.70 Mainly Alpha Up-down Bundle Substrate Binding Domain Of Dnak; Chain:A; Domain 2 Designed single chain three-helix bundle 1lq7A00
1LQ7A 2LXYA 2MI7A 2ZXQA
chains in the Genus database with same CATH superfamily
4R5GA 2KHOA 1E2UA 4IWPA 3B52X 4PO2A 4WPCA 3Q0KA 2WYHA 3OK8A 5FLEX 2O0I1 3BUIA 2OO2A 4M0MA 2X3WA 3VEAA 4R5KA 3L3OM 2NCZA 2GAFD 1I4LA 3I39X 2YI9A 1DKYA 3EJUA 4R5IA 4HY9A 3QNIA 3GI7A 1R33A 1OA1A 4EZYA 1QWUA 3T4AG 4BNEA 1JQKA 3DPQA 4E3CA 4IM2A 1Y2OA 3I2WA 4FZOA 4NQIA 2WINM 3O3MB 1YWMA 3EJPA 1GNTA 1TQTA 3CZNA 2F7OA 4NPHA 4IM0A 1WDZA 1UPXA 4JNEA 1O7DC 2RAIA 4EZUA 2RT6A 1HWWA 3A98A 3CKDA 1I49A 1HXKA 3EJQA 3SOGA 4G6QA 4R5LA 3DX3A 2F1BA 4JWIA 4I1QA 1ZYLA 3ACOA 4JWEA 3D4YA 2FYVA 4JL9A 2QFFA 2RAKA 2Z0OA 3BVTA 3VKHA 5TKYA 4AZBA 2F7QA 2X3VA 2EX3B 2Q12A 2ND0A 2LM0A 3I04A 2YL8A 2EWFA 3BVWA 2YLLA 4EZXA 1DKXA 3OWGA 1R34A 1ZWWA 3BUQA 1X04A 1X03A 3BUDA 2OW6A 2EFKA 2JNSA 1O7DB 2F7RA 4IW0A 3CZSA 2X5CA 2OBMA 3ER9B 1SU7A 1U00A 3BUPA 4UDYX 2F7PA 2N3KA 3D51A 4FZPA 1E9VA 2YIAA 2ALWA 2YL5A 2OW7A 3QWEA 3DPPA 4DCNC 2GF4A 1GNLA 3DX0A 3CVRA 3FD9A 4AZ7A 1URUA 2Z0VA 3T46A 2JNKA 1TQUA 4EZZA 4NSWA 3D50A 2YL9A 1I4DA 1PS3A 3RPMA 5C5BA 2PY6A 4WPEA 3CAZA 3DX2A 4IM3A 3T48A 3B51X 3DPOA 3ERCC 4EZOA 3BVVA 3QA8A 4FZSA 1HTYA 4HR1B 3OHXM 5C5BB 1SUFA 3O3OB 4ATMA 4HYBA 3ZEDA 3DX1A 4AZIA 4EZQA 3BLBA 2Q13A 1I4TA 4AZGA 3EJTA 4AVMA 3LLLA 3T49A 4JLCA 5E84A 3HAHA 3KAVA 2YIVX 3KDRA 2RAJA 3G9GA 3RV1A 2D4CA 3B53X 3UITA 1TQVA 2YLAA 4H6IA 3LVTA 5KBPA 2F18A 3D52A 4H8SA 3DDFA 3D2EA 4JNFA 4FM3A 2EFLA 3EJRA 4EZSA 1R5EA 4AZCA 1OAOA 2MI7A 2OBLA 4AKVA 2GA9D 3VEBA 4IWOA 3F7WA 4EZTA 4EZNA 4EZRA 3M3WA 5FIGA 3HAIA 2Z8YA 3D2FA 1GN9A 1DKZA 4JWDA 4AZCB 2YL6A 4EZVA 3BUBA 2YIBA 3RV0A 2LXYA 4E81A 2YI8A 4EZPA 4EZWA 2D1LA 3T47A 4UDXX 3C7NA 3QNJA 4F00A 4KIKA 2C08A 4HR1A 3QE6A 3BVXA 3HAJA 2OZNB 1LQ7A 4DYLA 3DX4A 4JWCA 4KIKB 2WYIA 4AZ6A 4AZHA 2V0OA 4R5JA 3L3PA 3DYTA 3EJSA 2ZXQA 2F1AA 1QWNA 1TQWA 2X3XA 3Q84A 1OA0A 1MJGA 2QXLA 3LMFA 4F01A 2YKTA 2Z0NA 4B9QA 1QX1A 4JN4A 3I01A 2ELBA 4IWQA 3BVUA 3ABHA 3CV5A 4AZ5A 1TQSA 3KAWA 2FICA 1E1DA 3DDGA 4H6HA 4D8JA 1SU6A 3D4ZA 3SYVA 2ND1A 3O3NB 2PMRA 3ER8C 3PLTA 1SU8A 2QKWA 1W9MA
chains in the Genus database with same CATH topology
1LQ7A 2LXYA 2MI7A 2ZXQA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1LQ7 A;  2LXY A;  2MI7 A;  2ZXQ A; 
#chains in the Genus database with same CATH topology
 4R5G A;  2KHO A;  1E2U A;  4IWP A;  3B52 X;  4PO2 A;  4WPC A;  3Q0K A;  2WYH A;  3OK8 A;  5FLE X;  2O0I 1;  3BUI A;  2OO2 A;  4M0M A;  2X3W A;  3VEA A;  4R5K A;  3L3O M;  2NCZ A;  2GAF D;  1I4L A;  3I39 X;  2YI9 A;  1DKY A;  3EJU A;  4R5I A;  4HY9 A;  3QNI A;  3GI7 A;  1R33 A;  1OA1 A;  4EZY A;  1QWU A;  3T4A G;  4BNE A;  1JQK A;  3DPQ A;  4E3C A;  4IM2 A;  1Y2O A;  3I2W A;  4FZO A;  4NQI A;  2WIN M;  3O3M B;  1YWM A;  3EJP A;  1GNT A;  1TQT A;  3CZN A;  2F7O A;  4NPH A;  4IM0 A;  1WDZ A;  1UPX A;  4JNE A;  1O7D C;  2RAI A;  4EZU A;  2RT6 A;  1HWW A;  3A98 A;  3CKD A;  1I49 A;  1HXK A;  3EJQ A;  3SOG A;  4G6Q A;  4R5L A;  3DX3 A;  2F1B A;  4JWI A;  4I1Q A;  1ZYL A;  3ACO A;  4JWE A;  3D4Y A;  2FYV A;  4JL9 A;  2QFF A;  2RAK A;  2Z0O A;  3BVT A;  3VKH A;  5TKY A;  4AZB A;  2F7Q A;  2X3V A;  2EX3 B;  2Q12 A;  2ND0 A;  2LM0 A;  3I04 A;  2YL8 A;  2EWF A;  3BVW A;  2YLL A;  4EZX A;  1DKX A;  3OWG A;  1R34 A;  1ZWW A;  3BUQ A;  1X04 A;  1X03 A;  3BUD A;  2OW6 A;  2EFK A;  2JNS A;  1O7D B;  2F7R A;  4IW0 A;  3CZS A;  2X5C A;  2OBM A;  3ER9 B;  1SU7 A;  1U00 A;  3BUP A;  4UDY X;  2F7P A;  2N3K A;  3D51 A;  4FZP A;  1E9V A;  2YIA A;  2ALW A;  2YL5 A;  2OW7 A;  3QWE A;  3DPP A;  4DCN C;  2GF4 A;  1GNL A;  3DX0 A;  3CVR A;  3FD9 A;  4AZ7 A;  1URU A;  2Z0V A;  3T46 A;  2JNK A;  1TQU A;  4EZZ A;  4NSW A;  3D50 A;  2YL9 A;  1I4D A;  1PS3 A;  3RPM A;  5C5B A;  2PY6 A;  4WPE A;  3CAZ A;  3DX2 A;  4IM3 A;  3T48 A;  3B51 X;  3DPO A;  3ERC C;  4EZO A;  3BVV A;  3QA8 A;  4FZS A;  1HTY A;  4HR1 B;  3OHX M;  5C5B B;  1SUF A;  3O3O B;  4ATM A;  4HYB A;  3ZED A;  3DX1 A;  4AZI A;  4EZQ A;  3BLB A;  2Q13 A;  1I4T A;  4AZG A;  3EJT A;  4AVM A;  3LLL A;  3T49 A;  4JLC A;  5E84 A;  3HAH A;  3KAV A;  2YIV X;  3KDR A;  2RAJ A;  3G9G A;  3RV1 A;  2D4C A;  3B53 X;  3UIT A;  1TQV A;  2YLA A;  4H6I A;  3LVT A;  5KBP A;  2F18 A;  3D52 A;  4H8S A;  3DDF A;  3D2E A;  4JNF A;  4FM3 A;  2EFL A;  3EJR A;  4EZS A;  1R5E A;  4AZC A;  1OAO A;  2MI7 A;  2OBL A;  4AKV A;  2GA9 D;  3VEB A;  4IWO A;  3F7W A;  4EZT A;  4EZN A;  4EZR A;  3M3W A;  5FIG A;  3HAI A;  2Z8Y A;  3D2F A;  1GN9 A;  1DKZ A;  4JWD A;  4AZC B;  2YL6 A;  4EZV A;  3BUB A;  2YIB A;  3RV0 A;  2LXY A;  4E81 A;  2YI8 A;  4EZP A;  4EZW A;  2D1L A;  3T47 A;  4UDX X;  3C7N A;  3QNJ A;  4F00 A;  4KIK A;  2C08 A;  4HR1 A;  3QE6 A;  3BVX A;  3HAJ A;  2OZN B;  1LQ7 A;  4DYL A;  3DX4 A;  4JWC A;  4KIK B;  2WYI A;  4AZ6 A;  4AZH A;  2V0O A;  4R5J A;  3L3P A;  3DYT A;  3EJS A;  2ZXQ A;  2F1A A;  1QWN A;  1TQW A;  2X3X A;  3Q84 A;  1OA0 A;  1MJG A;  2QXL A;  3LMF A;  4F01 A;  2YKT A;  2Z0N A;  4B9Q A;  1QX1 A;  4JN4 A;  3I01 A;  2ELB A;  4IWQ A;  3BVU A;  3ABH A;  3CV5 A;  4AZ5 A;  1TQS A;  3KAW A;  2FIC A;  1E1D A;  3DDG A;  4H6H A;  4D8J A;  1SU6 A;  3D4Z A;  3SYV A;  2ND1 A;  3O3N B;  2PMR A;  3ER8 C;  3PLT A;  1SU8 A;  2QKW A;  1W9M A; 
#chains in the Genus database with same CATH homology
 1LQ7 A;  2LXY A;  2MI7 A;  2ZXQ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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