4NQIA

Structure of the n-terminal i-bar domain (1-259) of d.discoideum ibara
Total Genus 92
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
92
sequence length
230
structure length
220
Chain Sequence
NPVIEITLKTINNLKVNSPPLFTEVIKAANKYQQQAQALSQAGLVLADTLTRLTIHNGGDFGEGFKKLADAIKDLENRRDDVAKVLLNEFITPNKQAIEDDQKAIATFEKNYKKDRDQMRQDILKLEAKTRKAGKITELNDKIKESEQLNANKLRDVVLMERRKHATFLSQFNQFLEKEIELSADTMSKFSTNLNTHRDLINSQSQLPLEMESMISKQER
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Signaling protein
molecule keywords SH3 domain-containing protein
publication title The inverse BAR domain protein IBARa drives membrane remodeling to control osmoregulation, phagocytosis and cytokinesis.
pubmed doi rcsb
source organism Dictyostelium discoideum
total genus 92
structure length 220
sequence length 230
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2013-11-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF08397 IMD IRSp53/MIM homology domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1270.60 Mainly Alpha Up-down Bundle Substrate Binding Domain Of Dnak; Chain:A; Domain 2 Arfaptin homology (AH) domain/BAR domain 4nqiA00
2RAJA 4H8SA 1Y2OA 2RAKA 3CAZA 3PLTA 4DYLA 1I49A 1X04A 2Z0VA 1I4LA 2X3VA 1URUA 2Z0OA 3M3WA 4FZSA 4WPEA 3LLLA 3I2WA 3QNIA 4WPCA 3G9GA 3ACOA 5C5BA 2D4CA 2V0OA 2RAIA 4ATMA 4AKVA 1ZWWA 4NSWA 4NQIA 1I4TA 2EFKA 3HAJA 2Q13A 3HAHA 2X3WA 3OK8A 3Q84A 1WDZA 3SOGA 2D1LA 3DYTA 3SYVA 1I4DA 3Q0KA 2FICA 3ABHA 3QWEA 1X03A 4BNEA 4I1QA 2YKTA 2ELBA 3QE6A 4AVMA 2X3XA 2C08A 2EFLA 4DCNC 2Q12A 3HAIA 2Z0NA 5C5BB
chains in the Genus database with same CATH superfamily
3OWGA 3DX1A 2LM0A 4IWPA 4R5GA 3BLBA 5C5BA 3DPPA 2D4CA 1HXKA 4FM3A 2YI8A 4AZHA 2RT6A 3EJRA 4JWEA 4IWQA 2X3XA 2F7QA 2YI9A 3DPQA 3FD9A 4H6IA 3B52X 3LLLA 1TQSA 2JNKA 3D4YA 1OA0A 3QNIA 3D50A 2OZNB 4JWIA 1I4TA 3DDGA 3ABHA 3A98A 3D2FA 2EFLA 3LMFA 4EZRA 1X04A 4FZSA 2PMRA 3GI7A 3ACOA 4PO2A 3CKDA 4HY9A 4AZ7A 1TQWA 4B9QA 1LQ7A 3BUDA 4JNEA 4EZNA 1URUA 3CVRA 4AZCA 3CZSA 2GF4A 3I2WA 3BVTA 1SU6A 1SU7A 2QXLA 3SYVA 3KDRA 4R5JA 3OHXM 2NCZA 1W9MA 2Z0NA 1O7DB 2EWFA 3PLTA 1I49A 5FLEX 1TQTA 5E84A 5KBPA 3BVXA 4EZZA 4EZSA 4HR1A 1OA1A 3QA8A 2EFKA 4R5LA 3I39X 3DX2A 3VEBA 4EZQA 4I1QA 2LXYA 2GAFD 1HWWA 4EZTA 3I01A 1DKXA 2F7PA 1GNTA 1R33A 2YIVX 3O3MB 4ATMA 3D52A 4FZOA 5FIGA 1E1DA 3RV1A 3KAWA 1YWMA 2ZXQA 4KIKA 2N3KA 4EZWA 4UDXX 1SU8A 2QFFA 3CAZA 3D4ZA 2X3VA 3M3WA 1HTYA 3G9GA 2QKWA 4IM2A 4AZGA 4AKVA 2F7RA 3EJUA 4NQIA 3EJQA 3HAHA 4EZOA 2ALWA 2OBLA 4BNEA 3T47A 4E3CA 4DCNC 4JLCA 1TQUA 1OAOA 4AZ6A 3BVVA 4H8SA 4DYLA 2F7OA 3BUQA 2X5CA 4EZXA 1ZWWA 1QWNA 3DYTA 1I4DA 4R5KA 4EZPA 4AZBA 4IW0A 3C7NA 4JN4A 3D2EA 3O3NB 2GA9D 2YIAA 1TQVA 2EX3B 5TKYA 1GNLA 1MJGA 3DX3A 2F1AA 3ERCC 2Q13A 2YL5A 3BUPA 3Q0KA 1ZYLA 5C5BB 2WINM 3EJPA 4H6HA 2V0OA 4D8JA 4NPHA 3HAJA 3OK8A 2D1LA 3CV5A 3VKHA 1X03A 1DKYA 3DDFA 3EJTA 3T46A 4IM0A 4JWCA 4UDYX 1UPXA 2YL8A 1I4LA 3DX4A 4EZUA 1R34A 2YIBA 3RPMA 3VEAA 3LVTA 2OO2A 1WDZA 3ZEDA 2FYVA 3BVWA 2JNSA 3B53X 2OW6A 2RAJA 4AZIA 3BVUA 1E9VA 2KHOA 2Z0OA 4WPEA 3ER9B 1GN9A 3QNJA 1SUFA 4NSWA 3ER8C 3T49A 1U00A 4AZCB 4AVMA 3EJSA 2WYHA 3BUIA 2O0I1 2YLAA 4JWDA 2MI7A 1Y2OA 2WYIA 2F18A 4JNFA 3T48A 3KAVA 2RAIA 4AZ5A 2X3WA 3UITA 1PS3A 4R5IA 4HR1B 3HAIA 1R5EA 2ND0A 4F00A 3O3OB 4HYBA 4WPCA 1QWUA 4M0MA 2F1BA 3B51X 3RV0A 4IWOA 2ND1A 2FICA 2YKTA 2YL6A 3QE6A 3D51A 3DPOA 4EZVA 2PY6A 2OW7A 4FZPA 1O7DC 4KIKB 1QX1A 4F01A 3SOGA 3QWEA 2Q12A 3L3OM 2RAKA 1E2UA 4EZYA 2Z0VA 3I04A 3T4AG 4G6QA 1DKZA 4JL9A 2YL9A 3DX0A 3Q84A 4E81A 3L3PA 2Z8YA 2YLLA 4IM3A 3F7WA 2ELBA 3BUBA 2OBMA 2C08A 1JQKA 3CZNA
chains in the Genus database with same CATH topology
2RAJA 4H8SA 1Y2OA 2RAKA 3CAZA 3PLTA 4DYLA 1I49A 1X04A 2Z0VA 1I4LA 2X3VA 1URUA 2Z0OA 3M3WA 4FZSA 4WPEA 3LLLA 3I2WA 3QNIA 4WPCA 3G9GA 3ACOA 5C5BA 2D4CA 2V0OA 2RAIA 4ATMA 4AKVA 1ZWWA 4NSWA 4NQIA 1I4TA 2EFKA 3HAJA 2Q13A 3HAHA 2X3WA 3OK8A 3Q84A 1WDZA 3SOGA 2D1LA 3DYTA 3SYVA 1I4DA 3Q0KA 2FICA 3ABHA 3QWEA 1X03A 4BNEA 4I1QA 2YKTA 2ELBA 3QE6A 4AVMA 2X3XA 2C08A 2EFLA 4DCNC 2Q12A 3HAIA 2Z0NA 5C5BB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2RAJ A;  4H8S A;  1Y2O A;  2RAK A;  3CAZ A;  3PLT A;  4DYL A;  1I49 A;  1X04 A;  2Z0V A;  1I4L A;  2X3V A;  1URU A;  2Z0O A;  3M3W A;  4FZS A;  4WPE A;  3LLL A;  3I2W A;  3QNI A;  4WPC A;  3G9G A;  3ACO A;  5C5B A;  2D4C A;  2V0O A;  2RAI A;  4ATM A;  4AKV A;  1ZWW A;  4NSW A;  4NQI A;  1I4T A;  2EFK A;  3HAJ A;  2Q13 A;  3HAH A;  2X3W A;  3OK8 A;  3Q84 A;  1WDZ A;  3SOG A;  2D1L A;  3DYT A;  3SYV A;  1I4D A;  3Q0K A;  2FIC A;  3ABH A;  3QWE A;  1X03 A;  4BNE A;  4I1Q A;  2YKT A;  2ELB A;  3QE6 A;  4AVM A;  2X3X A;  2C08 A;  2EFL A;  4DCN C;  2Q12 A;  3HAI A;  2Z0N A;  5C5B B; 
#chains in the Genus database with same CATH topology
 3OWG A;  3DX1 A;  2LM0 A;  4IWP A;  4R5G A;  3BLB A;  5C5B A;  3DPP A;  2D4C A;  1HXK A;  4FM3 A;  2YI8 A;  4AZH A;  2RT6 A;  3EJR A;  4JWE A;  4IWQ A;  2X3X A;  2F7Q A;  2YI9 A;  3DPQ A;  3FD9 A;  4H6I A;  3B52 X;  3LLL A;  1TQS A;  2JNK A;  3D4Y A;  1OA0 A;  3QNI A;  3D50 A;  2OZN B;  4JWI A;  1I4T A;  3DDG A;  3ABH A;  3A98 A;  3D2F A;  2EFL A;  3LMF A;  4EZR A;  1X04 A;  4FZS A;  2PMR A;  3GI7 A;  3ACO A;  4PO2 A;  3CKD A;  4HY9 A;  4AZ7 A;  1TQW A;  4B9Q A;  1LQ7 A;  3BUD A;  4JNE A;  4EZN A;  1URU A;  3CVR A;  4AZC A;  3CZS A;  2GF4 A;  3I2W A;  3BVT A;  1SU6 A;  1SU7 A;  2QXL A;  3SYV A;  3KDR A;  4R5J A;  3OHX M;  2NCZ A;  1W9M A;  2Z0N A;  1O7D B;  2EWF A;  3PLT A;  1I49 A;  5FLE X;  1TQT A;  5E84 A;  5KBP A;  3BVX A;  4EZZ A;  4EZS A;  4HR1 A;  1OA1 A;  3QA8 A;  2EFK A;  4R5L A;  3I39 X;  3DX2 A;  3VEB A;  4EZQ A;  4I1Q A;  2LXY A;  2GAF D;  1HWW A;  4EZT A;  3I01 A;  1DKX A;  2F7P A;  1GNT A;  1R33 A;  2YIV X;  3O3M B;  4ATM A;  3D52 A;  4FZO A;  5FIG A;  1E1D A;  3RV1 A;  3KAW A;  1YWM A;  2ZXQ A;  4KIK A;  2N3K A;  4EZW A;  4UDX X;  1SU8 A;  2QFF A;  3CAZ A;  3D4Z A;  2X3V A;  3M3W A;  1HTY A;  3G9G A;  2QKW A;  4IM2 A;  4AZG A;  4AKV A;  2F7R A;  3EJU A;  4NQI A;  3EJQ A;  3HAH A;  4EZO A;  2ALW A;  2OBL A;  4BNE A;  3T47 A;  4E3C A;  4DCN C;  4JLC A;  1TQU A;  1OAO A;  4AZ6 A;  3BVV A;  4H8S A;  4DYL A;  2F7O A;  3BUQ A;  2X5C A;  4EZX A;  1ZWW A;  1QWN A;  3DYT A;  1I4D A;  4R5K A;  4EZP A;  4AZB A;  4IW0 A;  3C7N A;  4JN4 A;  3D2E A;  3O3N B;  2GA9 D;  2YIA A;  1TQV A;  2EX3 B;  5TKY A;  1GNL A;  1MJG A;  3DX3 A;  2F1A A;  3ERC C;  2Q13 A;  2YL5 A;  3BUP A;  3Q0K A;  1ZYL A;  5C5B B;  2WIN M;  3EJP A;  4H6H A;  2V0O A;  4D8J A;  4NPH A;  3HAJ A;  3OK8 A;  2D1L A;  3CV5 A;  3VKH A;  1X03 A;  1DKY A;  3DDF A;  3EJT A;  3T46 A;  4IM0 A;  4JWC A;  4UDY X;  1UPX A;  2YL8 A;  1I4L A;  3DX4 A;  4EZU A;  1R34 A;  2YIB A;  3RPM A;  3VEA A;  3LVT A;  2OO2 A;  1WDZ A;  3ZED A;  2FYV A;  3BVW A;  2JNS A;  3B53 X;  2OW6 A;  2RAJ A;  4AZI A;  3BVU A;  1E9V A;  2KHO A;  2Z0O A;  4WPE A;  3ER9 B;  1GN9 A;  3QNJ A;  1SUF A;  4NSW A;  3ER8 C;  3T49 A;  1U00 A;  4AZC B;  4AVM A;  3EJS A;  2WYH A;  3BUI A;  2O0I 1;  2YLA A;  4JWD A;  2MI7 A;  1Y2O A;  2WYI A;  2F18 A;  4JNF A;  3T48 A;  3KAV A;  2RAI A;  4AZ5 A;  2X3W A;  3UIT A;  1PS3 A;  4R5I A;  4HR1 B;  3HAI A;  1R5E A;  2ND0 A;  4F00 A;  3O3O B;  4HYB A;  4WPC A;  1QWU A;  4M0M A;  2F1B A;  3B51 X;  3RV0 A;  4IWO A;  2ND1 A;  2FIC A;  2YKT A;  2YL6 A;  3QE6 A;  3D51 A;  3DPO A;  4EZV A;  2PY6 A;  2OW7 A;  4FZP A;  1O7D C;  4KIK B;  1QX1 A;  4F01 A;  3SOG A;  3QWE A;  2Q12 A;  3L3O M;  2RAK A;  1E2U A;  4EZY A;  2Z0V A;  3I04 A;  3T4A G;  4G6Q A;  1DKZ A;  4JL9 A;  2YL9 A;  3DX0 A;  3Q84 A;  4E81 A;  3L3P A;  2Z8Y A;  2YLL A;  4IM3 A;  3F7W A;  2ELB A;  3BUB A;  2OBM A;  2C08 A;  1JQK A;  3CZN A; 
#chains in the Genus database with same CATH homology
 2RAJ A;  4H8S A;  1Y2O A;  2RAK A;  3CAZ A;  3PLT A;  4DYL A;  1I49 A;  1X04 A;  2Z0V A;  1I4L A;  2X3V A;  1URU A;  2Z0O A;  3M3W A;  4FZS A;  4WPE A;  3LLL A;  3I2W A;  3QNI A;  4WPC A;  3G9G A;  3ACO A;  5C5B A;  2D4C A;  2V0O A;  2RAI A;  4ATM A;  4AKV A;  1ZWW A;  4NSW A;  4NQI A;  1I4T A;  2EFK A;  3HAJ A;  2Q13 A;  3HAH A;  2X3W A;  3OK8 A;  3Q84 A;  1WDZ A;  3SOG A;  2D1L A;  3DYT A;  3SYV A;  1I4D A;  3Q0K A;  2FIC A;  3ABH A;  3QWE A;  1X03 A;  4BNE A;  4I1Q A;  2YKT A;  2ELB A;  3QE6 A;  4AVM A;  2X3X A;  2C08 A;  2EFL A;  4DCN C;  2Q12 A;  3HAI A;  2Z0N A;  5C5B B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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