The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
92
|
sequence length |
230
|
structure length |
220
|
Chain Sequence |
NPVIEITLKTINNLKVNSPPLFTEVIKAANKYQQQAQALSQAGLVLADTLTRLTIHNGGDFGEGFKKLADAIKDLENRRDDVAKVLLNEFITPNKQAIEDDQKAIATFEKNYKKDRDQMRQDILKLEAKTRKAGKITELNDKIKESEQLNANKLRDVVLMERRKHATFLSQFNQFLEKEIELSADTMSKFSTNLNTHRDLINSQSQLPLEMESMISKQER
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule tags |
Signaling protein
|
| source organism |
Dictyostelium discoideum
|
| publication title |
The inverse BAR domain protein IBARa drives membrane remodeling to control osmoregulation, phagocytosis and cytokinesis.
pubmed doi rcsb |
| molecule keywords |
SH3 domain-containing protein
|
| total genus |
92
|
| structure length |
220
|
| sequence length |
230
|
| chains with identical sequence |
B, C, D
|
| ec nomenclature | |
| pdb deposition date | 2013-11-25 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF08397 | IMD | IRSp53/MIM homology domain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Up-down Bundle | Substrate Binding Domain Of Dnak; Chain:A; Domain 2 | Arfaptin homology (AH) domain/BAR domain |
#chains in the Genus database with same CATH superfamily 1Y2O A; 3DYT A; 4FZS A; 2Q13 A; 1I4D A; 4AKV A; 2EFK A; 4ATM A; 2X3V A; 4NSW A; 3CAZ A; 1X03 A; 1URU A; 2C08 A; 2EFL A; 3ABH A; 3LLL A; 5C5B B; 2ELB A; 3HAH A; 1WDZ A; 4WPC A; 4BNE A; 3HAJ A; 1X04 A; 2X3W A; 3QNI A; 3QE6 A; 4H8S A; 3G9G A; 1I4L A; 1ZWW A; 1I49 A; 1I4T A; 3OK8 A; 4DYL A; 2V0O A; 3QWE A; 3M3W A; 5C5B A; 2RAJ A; 2Z0N A; 3PLT A; 4I1Q A; 4AVM A; 2D4C A; 4WPE A; 4DCN C; 2Q12 A; 2Z0O A; 3SOG A; 3SYV A; 3Q84 A; 2RAI A; 2Z0V A; 2D1L A; 3Q0K A; 2X3X A; 2YKT A; 3I2W A; 4NQI A; 2FIC A; 3ACO A; 2RAK A; 3HAI A; #chains in the Genus database with same CATH topology 1Y2O A; 2Q13 A; 4IW0 A; 4AKV A; 4AZB A; 2OO2 A; 5KBP A; 3CVR A; 4KIK A; 2OBL A; 4DYL A; 3D4Y A; 2LM0 A; 3VKH A; 2RAI A; 2WYH A; 3Q0K A; 3I2W A; 2YKT A; 3BUD A; 2EWF A; 3DYT A; 4HR1 A; 4UDX X; 1R33 A; 4EZU A; 3FD9 A; 3ERC C; 3GI7 A; 3HAH A; 2YL6 A; 4AZC A; 1HWW A; 3EJS A; 4IWP A; 3BLB A; 4EZX A; 2D4C A; 2Q12 A; 3O3M B; 2ALW A; 2YI9 A; 3ACO A; 3HAI A; 3BUP A; 3CKD A; 2YI8 A; 4FM3 A; 1URU A; 1JQK A; 3EJT A; 4H6I A; 4WPC A; 1X04 A; 2QXL A; 1E1D A; 1MJG A; 1OAO A; 1TQS A; 3O3O B; 4KIK B; 3BUQ A; 1PS3 A; 4H6H A; 4NSW A; 4FZP A; 4JNF A; 2YIA A; 3ABH A; 1YWM A; 1HTY A; 3EJP A; 4R5I A; 1DKZ A; 1GNT A; 3T46 A; 2YL5 A; 2EFK A; 2QFF A; 4EZV A; 2YL9 A; 4IM2 A; 3QNI A; 3EJU A; 3I01 A; 5FLE X; 4B9Q A; 3BVV A; 3DPQ A; 3KDR A; 4WPE A; 3SYV A; 4HY9 A; 2D1L A; 2FIC A; 2GF4 A; 3LVT A; 2F1B A; 2X3V A; 3CAZ A; 1R5E A; 2EFL A; 3D4Z A; 4BNE A; 2X5C A; 4EZQ A; 4EZR A; 2ND1 A; 1SU8 A; 5C5B A; 1QX1 A; 3RV0 A; 3QNJ A; 4UDY X; 4FZS A; 3B52 X; 4JWI A; 4G6Q A; 2JNK A; 3CZN A; 3BVW A; 2ELB A; 1ZWW A; 3ER9 B; 2OZN B; 3OK8 A; 3L3O M; 3I39 X; 3QA8 A; 4EZO A; 4F01 A; 4M0M A; 3CZS A; 2F7R A; 1SU6 A; 4JL9 A; 3BUB A; 2FYV A; 3D2F A; 1I49 A; 3UIT A; 3DPP A; 2GA9 D; 3PLT A; 4IM3 A; 2Z8Y A; 2RT6 A; 4FZO A; 1E9V A; 4R5L A; 1ZYL A; 4ATM A; 1X03 A; 4E3C A; 1WDZ A; 4H8S A; 4EZN A; 4IM0 A; 4JNE A; 2F1A A; 2RAJ A; 3EJQ A; 1TQW A; 4EZY A; 4HR1 B; 1TQT A; 2JNS A; 4NQI A; 3DX3 A; 3DX2 A; 5TKY A; 1LQ7 A; 3O3N B; 4JWC A; 4AZC B; 3B51 X; 3T47 A; 3LLL A; 1QWU A; 2GAF D; 3DX0 A; 1TQU A; 4D8J A; 4E81 A; 3EJR A; 1I4L A; 2MI7 A; 1OA0 A; 2Z0N A; 2QKW A; 3BVT A; 4EZT A; 4DCN C; 2Z0O A; 3SOG A; 2F7Q A; 2RAK A; 4R5G A; 3L3P A; 4F00 A; 2ND0 A; 3KAW A; 2EX3 B; 3RV1 A; 2X3W A; 3QE6 A; 1O7D C; 1I4T A; 2F18 A; 2WIN M; 2LXY A; 1DKX A; 4I1Q A; 3DDF A; 2X3X A; 3T48 A; 3DX1 A; 4EZZ A; 1DKY A; 1GN9 A; 2F7O A; 2YL8 A; 3CV5 A; 3BUI A; 2PMR A; 4IWQ A; 1W9M A; 4PO2 A; 3A98 A; 2ZXQ A; 3G9G A; 2NCZ A; 2YLA A; 3M3W A; 3OWG A; 2OBM A; 2KHO A; 1O7D B; 3DPO A; 3BVX A; 1U00 A; 4AZH A; 3D2E A; 2PY6 A; 3D50 A; 3D51 A; 3DDG A; 5E84 A; 4IWO A; 1SUF A; 2V0O A; 3OHX M; 3LMF A; 2O0I 1; 1TQV A; 5FIG A; 1E2U A; 2OW6 A; 4JLC A; 4AZ6 A; 3B53 X; 2WYI A; 4AZI A; 3ER8 C; 3BVU A; 5C5B B; 4AZG A; 4JN4 A; 1R34 A; 2YIV X; 3QWE A; 4EZP A; 4AVM A; 3ZED A; 2Z0V A; 3DX4 A; 3RPM A; 3VEB A; 4JWD A; 3T4A G; 4AZ7 A; 1HXK A; 3I04 A; 1UPX A; 4NPH A; 4HYB A; 3D52 A; 3T49 A; 3VEA A; 4AZ5 A; 3KAV A; 4EZS A; 1OA1 A; 2N3K A; 3C7N A; 2OW7 A; 1SU7 A; 1I4D A; 4R5K A; 4JWE A; 2C08 A; 4EZW A; 2YIB A; 3HAJ A; 1QWN A; 2YLL A; 2F7P A; 4R5J A; 1GNL A; 3F7W A; 3Q84 A; #chains in the Genus database with same CATH homology 1Y2O A; 3DYT A; 4FZS A; 2Q13 A; 1I4D A; 4AKV A; 2EFK A; 4ATM A; 2X3V A; 4NSW A; 3CAZ A; 1X03 A; 1URU A; 2C08 A; 2EFL A; 3ABH A; 3LLL A; 5C5B B; 2ELB A; 3HAH A; 1WDZ A; 4WPC A; 4BNE A; 3HAJ A; 1X04 A; 2X3W A; 3QNI A; 3QE6 A; 4H8S A; 3G9G A; 1I4L A; 1ZWW A; 1I49 A; 1I4T A; 3OK8 A; 4DYL A; 2V0O A; 3QWE A; 3M3W A; 5C5B A; 2RAJ A; 2Z0N A; 3PLT A; 4I1Q A; 4AVM A; 2D4C A; 4WPE A; 4DCN C; 2Q12 A; 2Z0O A; 3SOG A; 3SYV A; 3Q84 A; 2RAI A; 2Z0V A; 2D1L A; 3Q0K A; 2X3X A; 2YKT A; 3I2W A; 4NQI A; 2FIC A; 3ACO A; 2RAK A; 3HAI A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
