2GF4A

Crystal structure of vng1086c from halobacterium salinarium (halobacterium halobium). northeast structural genomics target hsr14
Total Genus 30
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
30
sequence length
89
structure length
89
Chain Sequence
MHKDELLELHEQMVNIKDQFLGFDHVDETAFAAYEELDVEPSHVHKSKSEHKHAVFLLGNALAAAMSEDEFSSAGRISKRMEELADDAS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Structural genomics, unknown function
source organism Halobacterium sp.
publication title Crystal structure of Vng1086c from Halobacterium salinarium (Halobacterium halobium). Northeast Structural Genomics Target HsR14
rcsb
molecule keywords Protein Vng1086c
total genus 30
structure length 89
sequence length 89
chains with identical sequence B
ec nomenclature
pdb deposition date 2006-03-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01893 UPF0058 Uncharacterised protein family UPF0058
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1270.110 Mainly Alpha Up-down Bundle Substrate Binding Domain Of Dnak; Chain:A; Domain 2 Uncharacterised protein family UPF0058 2gf4A00
2GF4A
chains in the Genus database with same CATH superfamily
2F7RA 2YKTA 4E81A 3QNJA 1I4TA 3SOGA 2EFKA 3BVXA 3CAZA 3HAJA 4FZSA 3DX1A 4M0MA 3I2WA 4WPCA 3VKHA 2JNKA 4IWOA 1Y2OA 2YI8A 2OBMA 3KAWA 2F7OA 1MJGA 4FZOA 1QWUA 1URUA 1HTYA 3DPOA 4JWEA 5C5BA 2FYVA 3RPMA 4UDYX 1SU8A 5C5BB 2ND1A 3RV0A 4AZ7A 4R5IA 4PO2A 3CZNA 4NSWA 1QX1A 4EZTA 1U00A 2GAFD 3T49A 1GNTA 3O3OB 3T47A 1QWNA 2EWFA 3D4ZA 3KAVA 4EZNA 1E2UA 1HWWA 2N3KA 2LXYA 3EJUA 3A98A 4IM3A 3QNIA 2X3WA 1O7DB 2YLLA 1UPXA 2O0I1 3D2EA 2QFFA 3ER9B 3DX2A 2ELBA 3QA8A 3D50A 3LLLA 3BUQA 2OZNB 2LM0A 1ZWWA 3D51A 3T48A 2YL6A 3SYVA 3EJTA 3BLBA 3F7WA 3ABHA 3D2FA 3BUIA 3M3WA 3OWGA 1OA0A 3QWEA 3D52A 3T46A 2OBLA 4F00A 2YL9A 3BUPA 3QE6A 4IM2A 1E9VA 4EZUA 3ERCC 2WYIA 4NQIA 3L3OM 4AVMA 3DX0A 2ZXQA 3CZSA 3I01A 4I1QA 4G6QA 4R5JA 4AZ5A 3VEAA 2YIVX 3ER8C 1X04A 3DPPA 1WDZA 3BVWA 3O3MB 1GNLA 3EJQA 3BVUA 2Z0OA 2X3XA 4EZZA 1SU6A 3T4AG 4HR1A 3HAIA 4HR1B 3DDFA 4EZOA 3HAHA 2D1LA 3PLTA 4IWPA 3ACOA 1I4DA 4IM0A 4IW0A 3UITA 3OHXM 1O7DC 3EJSA 3CKDA 1PS3A 3B52X 3CVRA 4AZIA 2F7PA 4EZRA 2RAIA 3BVVA 3EJRA 1TQVA 2RT6A 4UDXX 3BUDA 4JLCA 1OAOA 2KHOA 2F1BA 2OO2A 3O3NB 1DKXA 1SU7A 4F01A 3I04A 2ND0A 4JWIA 2RAKA 1GN9A 3LVTA 2QXLA 1E1DA 2X3VA 2F1AA 2WYHA 2C08A 5TKYA 4JNFA 3VEBA 2MI7A 1OA1A 3BUBA 2PY6A 4EZQA 2GF4A 4EZYA 4HY9A 4ATMA 4KIKA 4AZBA 2V0OA 4KIKB 5KBPA 1ZYLA 4JWCA 1R34A 3L3PA 2YL5A 4AZCA 3DX3A 4AZCB 2PMRA 3DYTA 3EJPA 2FICA 1R5EA 5FLEX 3RV1A 4JN4A 3KDRA 4JWDA 3Q0KA 4EZPA 4JNEA 3OK8A 4R5GA 4EZXA 2QKWA 4HYBA 2OW7A 4EZSA 4H6IA 5FIGA 1JQKA 1LQ7A 3C7NA 4AZGA 1SUFA 4AZHA 4R5LA 3B51X 1R33A 2JNSA 3FD9A 4WPEA 3CV5A 2YIAA 2Z8YA 3LMFA 2D4CA 2OW6A 4D8JA 2EFLA 2F7QA 4FZPA 1TQTA 3I39X 2GA9D 2YI9A 4BNEA 3B53X 2RAJA 4EZWA 1W9MA 4IWQA 2Z0NA 1HXKA 2Q12A 2Z0VA 4H6HA 3BVTA 3GI7A 3DX4A 2ALWA 1I4LA 2YIBA 4NPHA 1DKZA 3DDGA 4DCNC 4FM3A 4EZVA 4AZ6A 5E84A 1TQUA 1X03A 4R5KA 2WINM 4DYLA 2YLAA 4JL9A 1TQSA 1I49A 4E3CA 2F18A 2NCZA 1YWMA 2Q13A 4AKVA 1DKYA 2YL8A 2X5CA 4B9QA 1TQWA 3DPQA 2EX3B 3D4YA 3Q84A 3ZEDA 4H8SA 3G9GA
chains in the Genus database with same CATH topology
2GF4A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2GF4 A; 
#chains in the Genus database with same CATH topology
 2F7R A;  2YKT A;  4E81 A;  3QNJ A;  1I4T A;  3SOG A;  2EFK A;  3BVX A;  3CAZ A;  3HAJ A;  4FZS A;  3DX1 A;  4M0M A;  3I2W A;  4WPC A;  3VKH A;  2JNK A;  4IWO A;  1Y2O A;  2YI8 A;  2OBM A;  3KAW A;  2F7O A;  1MJG A;  4FZO A;  1QWU A;  1URU A;  1HTY A;  3DPO A;  4JWE A;  5C5B A;  2FYV A;  3RPM A;  4UDY X;  1SU8 A;  5C5B B;  2ND1 A;  3RV0 A;  4AZ7 A;  4R5I A;  4PO2 A;  3CZN A;  4NSW A;  1QX1 A;  4EZT A;  1U00 A;  2GAF D;  3T49 A;  1GNT A;  3O3O B;  3T47 A;  1QWN A;  2EWF A;  3D4Z A;  3KAV A;  4EZN A;  1E2U A;  1HWW A;  2N3K A;  2LXY A;  3EJU A;  3A98 A;  4IM3 A;  3QNI A;  2X3W A;  1O7D B;  2YLL A;  1UPX A;  2O0I 1;  3D2E A;  2QFF A;  3ER9 B;  3DX2 A;  2ELB A;  3QA8 A;  3D50 A;  3LLL A;  3BUQ A;  2OZN B;  2LM0 A;  1ZWW A;  3D51 A;  3T48 A;  2YL6 A;  3SYV A;  3EJT A;  3BLB A;  3F7W A;  3ABH A;  3D2F A;  3BUI A;  3M3W A;  3OWG A;  1OA0 A;  3QWE A;  3D52 A;  3T46 A;  2OBL A;  4F00 A;  2YL9 A;  3BUP A;  3QE6 A;  4IM2 A;  1E9V A;  4EZU A;  3ERC C;  2WYI A;  4NQI A;  3L3O M;  4AVM A;  3DX0 A;  2ZXQ A;  3CZS A;  3I01 A;  4I1Q A;  4G6Q A;  4R5J A;  4AZ5 A;  3VEA A;  2YIV X;  3ER8 C;  1X04 A;  3DPP A;  1WDZ A;  3BVW A;  3O3M B;  1GNL A;  3EJQ A;  3BVU A;  2Z0O A;  2X3X A;  4EZZ A;  1SU6 A;  3T4A G;  4HR1 A;  3HAI A;  4HR1 B;  3DDF A;  4EZO A;  3HAH A;  2D1L A;  3PLT A;  4IWP A;  3ACO A;  1I4D A;  4IM0 A;  4IW0 A;  3UIT A;  3OHX M;  1O7D C;  3EJS A;  3CKD A;  1PS3 A;  3B52 X;  3CVR A;  4AZI A;  2F7P A;  4EZR A;  2RAI A;  3BVV A;  3EJR A;  1TQV A;  2RT6 A;  4UDX X;  3BUD A;  4JLC A;  1OAO A;  2KHO A;  2F1B A;  2OO2 A;  3O3N B;  1DKX A;  1SU7 A;  4F01 A;  3I04 A;  2ND0 A;  4JWI A;  2RAK A;  1GN9 A;  3LVT A;  2QXL A;  1E1D A;  2X3V A;  2F1A A;  2WYH A;  2C08 A;  5TKY A;  4JNF A;  3VEB A;  2MI7 A;  1OA1 A;  3BUB A;  2PY6 A;  4EZQ A;  2GF4 A;  4EZY A;  4HY9 A;  4ATM A;  4KIK A;  4AZB A;  2V0O A;  4KIK B;  5KBP A;  1ZYL A;  4JWC A;  1R34 A;  3L3P A;  2YL5 A;  4AZC A;  3DX3 A;  4AZC B;  2PMR A;  3DYT A;  3EJP A;  2FIC A;  1R5E A;  5FLE X;  3RV1 A;  4JN4 A;  3KDR A;  4JWD A;  3Q0K A;  4EZP A;  4JNE A;  3OK8 A;  4R5G A;  4EZX A;  2QKW A;  4HYB A;  2OW7 A;  4EZS A;  4H6I A;  5FIG A;  1JQK A;  1LQ7 A;  3C7N A;  4AZG A;  1SUF A;  4AZH A;  4R5L A;  3B51 X;  1R33 A;  2JNS A;  3FD9 A;  4WPE A;  3CV5 A;  2YIA A;  2Z8Y A;  3LMF A;  2D4C A;  2OW6 A;  4D8J A;  2EFL A;  2F7Q A;  4FZP A;  1TQT A;  3I39 X;  2GA9 D;  2YI9 A;  4BNE A;  3B53 X;  2RAJ A;  4EZW A;  1W9M A;  4IWQ A;  2Z0N A;  1HXK A;  2Q12 A;  2Z0V A;  4H6H A;  3BVT A;  3GI7 A;  3DX4 A;  2ALW A;  1I4L A;  2YIB A;  4NPH A;  1DKZ A;  3DDG A;  4DCN C;  4FM3 A;  4EZV A;  4AZ6 A;  5E84 A;  1TQU A;  1X03 A;  4R5K A;  2WIN M;  4DYL A;  2YLA A;  4JL9 A;  1TQS A;  1I49 A;  4E3C A;  2F18 A;  2NCZ A;  1YWM A;  2Q13 A;  4AKV A;  1DKY A;  2YL8 A;  2X5C A;  4B9Q A;  1TQW A;  3DPQ A;  2EX3 B;  3D4Y A;  3Q84 A;  3ZED A;  4H8S A;  3G9G A; 
#chains in the Genus database with same CATH homology
 2GF4 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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