2D4CA

Crystal structure of the endophilin bar domain mutant
Total Genus 99
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
99
sequence length
241
structure length
224
Chain Sequence
HKATQKVSEKVGGAEGTKLDDDFKEMERKVDVTSRAVMEIMTKTIEYLQPNPASRAKLYPQAEALLAEAMLKFGRELGDDCNFGPALGEVGEAMRELSEVKDSLDIEVKQNFIDPLQNLHDKDLREIQSALQHHLKKLEGRRLDFDYKKKRQGKIPDEELRQALEKFDESKEIAESSMFNLLEMDIEQVSQLSALVQAQLEYHKQAVQILQQVTVRLEERIRQA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
molecule keywords SH3-containing GRB2-like protein 2
publication title Endophilin BAR domain drives membrane curvature by two newly identified structure-based mechanisms
pubmed doi rcsb
source organism Homo sapiens
total genus 99
structure length 224
sequence length 241
chains with identical sequence B, C, D
ec nomenclature ec 2.3.1.-:
pdb deposition date 2005-10-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03114 BAR BAR domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1270.60 Mainly Alpha Up-down Bundle Substrate Binding Domain Of Dnak; Chain:A; Domain 2 Arfaptin homology (AH) domain/BAR domain 2d4cA00
1I4DA 2C08A 3QNIA 2Z0VA 3Q0KA 3ABHA 2D1LA 2D4CA 2X3WA 4DCNC 4NSWA 5C5BA 1WDZA 3M3WA 1X04A 2FICA 2RAJA 3DYTA 4FZSA 3Q84A 3CAZA 4ATMA 4WPCA 1I4LA 3SYVA 3LLLA 2RAKA 4I1QA 3QWEA 2Z0NA 2X3VA 4H8SA 1ZWWA 4AVMA 1Y2OA 2X3XA 1X03A 3SOGA 2ELBA 2Z0OA 3HAJA 3ACOA 3HAIA 4DYLA 2RAIA 4WPEA 2YKTA 2EFLA 2Q13A 3HAHA 2EFKA 2Q12A 3OK8A 3PLTA 1URUA 4NQIA 1I4TA 3QE6A 3I2WA 1I49A 2V0OA 5C5BB 3G9GA 4BNEA 4AKVA
chains in the Genus database with same CATH superfamily
3BLBA 2PMRA 3D4YA 2OW6A 2Z8YA 2YLAA 5TKYA 1GNLA 3DX1A 1OA1A 4H8SA 4EZXA 3DX2A 3CV5A 4AZIA 4AZ6A 3I01A 4JWEA 4D8JA 4IWOA 3BUPA 3Q84A 4HYBA 1I4LA 3D51A 3A98A 2X3XA 1SUFA 3HAHA 1GN9A 1DKXA 4JWCA 4AZGA 3T46A 3BUDA 2F7QA 3BVTA 2C08A 3B52X 3RV0A 2RAJA 2YL6A 1W9MA 2EWFA 2YI8A 4I1QA 2ALWA 3HAJA 2LXYA 3BUQA 3BVVA 2FYVA 4KIKB 1HWWA 2F7OA 1ZYLA 3O3NB 1MJGA 1O7DB 2F1BA 3DX3A 4EZWA 4UDYX 3CVRA 3EJPA 3EJUA 4ATMA 3GI7A 4JLCA 3FD9A 3UITA 4EZTA 4AVMA 1Y2OA 2F18A 2MI7A 2Z0OA 3HAIA 4R5GA 2KHOA 2GF4A 1URUA 1JQKA 3I39X 2F7PA 1O7DC 4R5JA 3D52A 1DKZA 4IM0A 3T47A 1R33A 1TQTA 1GNTA 2EFLA 3DX4A 4JWIA 3OWGA 3O3MB 3ER9B 1QWUA 2FICA 1TQWA 4EZVA 2Z0NA 4G6QA 2WYHA 2RT6A 2GAFD 2ND0A 3EJTA 2OZNB 1SU6A 2Z0VA 4AZHA 1E9VA 4AZCB 5C5BA 3M3WA 4NPHA 3CZNA 3SYVA 1OAOA 4JL9A 4IWPA 2YIBA 4JWDA 4HR1A 3VEAA 5FIGA 2OW7A 4EZZA 4AZBA 2GA9D 3I2WA 5FLEX 3ERCC 2F1AA 3BVUA 3ABHA 4H6IA 3EJSA 2D4CA 4DCNC 4NSWA 1SU7A 1WDZA 3F7WA 4EZPA 4WPCA 2RAKA 2YL5A 3ACOA 2YIAA 2YI9A 3B53X 3D2FA 3DPQA 2OO2A 1QX1A 4HY9A 1SU8A 2YLLA 1TQSA 4FZSA 1R5EA 4FZPA 1ZWWA 3OK8A 4EZRA 3DDGA 3RPMA 3T48A 1I49A 3L3OM 1PS3A 2OBMA 3QA8A 2NCZA 3QNJA 4EZUA 3I04A 3QWEA 2QXLA 3RV1A 2Q13A 3O3OB 2Q12A 4JNFA 4IM3A 3CZSA 4R5IA 4BNEA 4KIKA 3Q0KA 2D1LA 4E3CA 2X3WA 2ZXQA 2PY6A 1TQVA 3ZEDA 3CAZA 3DPPA 4PO2A 1LQ7A 3T4AG 3KAVA 3EJRA 3SOGA 2JNSA 3QE6A 3G9GA 4R5KA 1U00A 3QNIA 4UDXX 3T49A 2YIVX 3B51X 3LMFA 4FZOA 3DYTA 3DDFA 3D50A 3ER8C 1QWNA 5KBPA 3VEBA 2X3VA 1X03A 1YWMA 2QFFA 4M0MA 2EFKA 1DKYA 4IW0A 4F01A 4DYLA 1I4DA 3OHXM 4H6HA 4AZ7A 2YL8A 1HXKA 2X5CA 4JN4A 5E84A 4EZYA 3LLLA 1E1DA 3KDRA 4EZOA 3PLTA 3BVXA 4EZNA 2V0OA 4EZSA 5C5BB 3C7NA 1R34A 4AKVA 4R5LA 3KAWA 1X04A 1OA0A 1E2UA 3BVWA 4IM2A 4AZCA 1UPXA 2QKWA 3CKDA 4AZ5A 2YKTA 3L3PA 2O0I1 1I4TA 4HR1B 1TQUA 3D4ZA 4E81A 3BUBA 2YL9A 4IWQA 4F00A 4B9QA 2F7RA 2OBLA 4EZQA 4JNEA 3DPOA 2JNKA 3EJQA 2LM0A 1HTYA 3LVTA 3VKHA 2EX3B 2N3KA 3DX0A 2ELBA 2RAIA 4FM3A 4NQIA 2WINM 3BUIA 2ND1A 4WPEA 2WYIA 3D2EA
chains in the Genus database with same CATH topology
1I4DA 2C08A 3QNIA 2Z0VA 3Q0KA 3ABHA 2D1LA 2D4CA 2X3WA 4DCNC 4NSWA 5C5BA 1WDZA 3M3WA 1X04A 2FICA 2RAJA 3DYTA 4FZSA 3Q84A 3CAZA 4ATMA 4WPCA 1I4LA 3SYVA 3LLLA 2RAKA 4I1QA 3QWEA 2Z0NA 2X3VA 4H8SA 1ZWWA 4AVMA 1Y2OA 2X3XA 1X03A 3SOGA 2ELBA 2Z0OA 3HAJA 3ACOA 3HAIA 4DYLA 2RAIA 4WPEA 2YKTA 2EFLA 2Q13A 3HAHA 2EFKA 2Q12A 3OK8A 3PLTA 1URUA 4NQIA 1I4TA 3QE6A 3I2WA 1I49A 2V0OA 5C5BB 3G9GA 4BNEA 4AKVA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1I4D A;  2C08 A;  3QNI A;  2Z0V A;  3Q0K A;  3ABH A;  2D1L A;  2D4C A;  2X3W A;  4DCN C;  4NSW A;  5C5B A;  1WDZ A;  3M3W A;  1X04 A;  2FIC A;  2RAJ A;  3DYT A;  4FZS A;  3Q84 A;  3CAZ A;  4ATM A;  4WPC A;  1I4L A;  3SYV A;  3LLL A;  2RAK A;  4I1Q A;  3QWE A;  2Z0N A;  2X3V A;  4H8S A;  1ZWW A;  4AVM A;  1Y2O A;  2X3X A;  1X03 A;  3SOG A;  2ELB A;  2Z0O A;  3HAJ A;  3ACO A;  3HAI A;  4DYL A;  2RAI A;  4WPE A;  2YKT A;  2EFL A;  2Q13 A;  3HAH A;  2EFK A;  2Q12 A;  3OK8 A;  3PLT A;  1URU A;  4NQI A;  1I4T A;  3QE6 A;  3I2W A;  1I49 A;  2V0O A;  5C5B B;  3G9G A;  4BNE A;  4AKV A; 
#chains in the Genus database with same CATH topology
 3BLB A;  2PMR A;  3D4Y A;  2OW6 A;  2Z8Y A;  2YLA A;  5TKY A;  1GNL A;  3DX1 A;  1OA1 A;  4H8S A;  4EZX A;  3DX2 A;  3CV5 A;  4AZI A;  4AZ6 A;  3I01 A;  4JWE A;  4D8J A;  4IWO A;  3BUP A;  3Q84 A;  4HYB A;  1I4L A;  3D51 A;  3A98 A;  2X3X A;  1SUF A;  3HAH A;  1GN9 A;  1DKX A;  4JWC A;  4AZG A;  3T46 A;  3BUD A;  2F7Q A;  3BVT A;  2C08 A;  3B52 X;  3RV0 A;  2RAJ A;  2YL6 A;  1W9M A;  2EWF A;  2YI8 A;  4I1Q A;  2ALW A;  3HAJ A;  2LXY A;  3BUQ A;  3BVV A;  2FYV A;  4KIK B;  1HWW A;  2F7O A;  1ZYL A;  3O3N B;  1MJG A;  1O7D B;  2F1B A;  3DX3 A;  4EZW A;  4UDY X;  3CVR A;  3EJP A;  3EJU A;  4ATM A;  3GI7 A;  4JLC A;  3FD9 A;  3UIT A;  4EZT A;  4AVM A;  1Y2O A;  2F18 A;  2MI7 A;  2Z0O A;  3HAI A;  4R5G A;  2KHO A;  2GF4 A;  1URU A;  1JQK A;  3I39 X;  2F7P A;  1O7D C;  4R5J A;  3D52 A;  1DKZ A;  4IM0 A;  3T47 A;  1R33 A;  1TQT A;  1GNT A;  2EFL A;  3DX4 A;  4JWI A;  3OWG A;  3O3M B;  3ER9 B;  1QWU A;  2FIC A;  1TQW A;  4EZV A;  2Z0N A;  4G6Q A;  2WYH A;  2RT6 A;  2GAF D;  2ND0 A;  3EJT A;  2OZN B;  1SU6 A;  2Z0V A;  4AZH A;  1E9V A;  4AZC B;  5C5B A;  3M3W A;  4NPH A;  3CZN A;  3SYV A;  1OAO A;  4JL9 A;  4IWP A;  2YIB A;  4JWD A;  4HR1 A;  3VEA A;  5FIG A;  2OW7 A;  4EZZ A;  4AZB A;  2GA9 D;  3I2W A;  5FLE X;  3ERC C;  2F1A A;  3BVU A;  3ABH A;  4H6I A;  3EJS A;  2D4C A;  4DCN C;  4NSW A;  1SU7 A;  1WDZ A;  3F7W A;  4EZP A;  4WPC A;  2RAK A;  2YL5 A;  3ACO A;  2YIA A;  2YI9 A;  3B53 X;  3D2F A;  3DPQ A;  2OO2 A;  1QX1 A;  4HY9 A;  1SU8 A;  2YLL A;  1TQS A;  4FZS A;  1R5E A;  4FZP A;  1ZWW A;  3OK8 A;  4EZR A;  3DDG A;  3RPM A;  3T48 A;  1I49 A;  3L3O M;  1PS3 A;  2OBM A;  3QA8 A;  2NCZ A;  3QNJ A;  4EZU A;  3I04 A;  3QWE A;  2QXL A;  3RV1 A;  2Q13 A;  3O3O B;  2Q12 A;  4JNF A;  4IM3 A;  3CZS A;  4R5I A;  4BNE A;  4KIK A;  3Q0K A;  2D1L A;  4E3C A;  2X3W A;  2ZXQ A;  2PY6 A;  1TQV A;  3ZED A;  3CAZ A;  3DPP A;  4PO2 A;  1LQ7 A;  3T4A G;  3KAV A;  3EJR A;  3SOG A;  2JNS A;  3QE6 A;  3G9G A;  4R5K A;  1U00 A;  3QNI A;  4UDX X;  3T49 A;  2YIV X;  3B51 X;  3LMF A;  4FZO A;  3DYT A;  3DDF A;  3D50 A;  3ER8 C;  1QWN A;  5KBP A;  3VEB A;  2X3V A;  1X03 A;  1YWM A;  2QFF A;  4M0M A;  2EFK A;  1DKY A;  4IW0 A;  4F01 A;  4DYL A;  1I4D A;  3OHX M;  4H6H A;  4AZ7 A;  2YL8 A;  1HXK A;  2X5C A;  4JN4 A;  5E84 A;  4EZY A;  3LLL A;  1E1D A;  3KDR A;  4EZO A;  3PLT A;  3BVX A;  4EZN A;  2V0O A;  4EZS A;  5C5B B;  3C7N A;  1R34 A;  4AKV A;  4R5L A;  3KAW A;  1X04 A;  1OA0 A;  1E2U A;  3BVW A;  4IM2 A;  4AZC A;  1UPX A;  2QKW A;  3CKD A;  4AZ5 A;  2YKT A;  3L3P A;  2O0I 1;  1I4T A;  4HR1 B;  1TQU A;  3D4Z A;  4E81 A;  3BUB A;  2YL9 A;  4IWQ A;  4F00 A;  4B9Q A;  2F7R A;  2OBL A;  4EZQ A;  4JNE A;  3DPO A;  2JNK A;  3EJQ A;  2LM0 A;  1HTY A;  3LVT A;  3VKH A;  2EX3 B;  2N3K A;  3DX0 A;  2ELB A;  2RAI A;  4FM3 A;  4NQI A;  2WIN M;  3BUI A;  2ND1 A;  4WPE A;  2WYI A;  3D2E A; 
#chains in the Genus database with same CATH homology
 1I4D A;  2C08 A;  3QNI A;  2Z0V A;  3Q0K A;  3ABH A;  2D1L A;  2D4C A;  2X3W A;  4DCN C;  4NSW A;  5C5B A;  1WDZ A;  3M3W A;  1X04 A;  2FIC A;  2RAJ A;  3DYT A;  4FZS A;  3Q84 A;  3CAZ A;  4ATM A;  4WPC A;  1I4L A;  3SYV A;  3LLL A;  2RAK A;  4I1Q A;  3QWE A;  2Z0N A;  2X3V A;  4H8S A;  1ZWW A;  4AVM A;  1Y2O A;  2X3X A;  1X03 A;  3SOG A;  2ELB A;  2Z0O A;  3HAJ A;  3ACO A;  3HAI A;  4DYL A;  2RAI A;  4WPE A;  2YKT A;  2EFL A;  2Q13 A;  3HAH A;  2EFK A;  2Q12 A;  3OK8 A;  3PLT A;  1URU A;  4NQI A;  1I4T A;  3QE6 A;  3I2W A;  1I49 A;  2V0O A;  5C5B B;  3G9G A;  4BNE A;  4AKV A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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