3G9GA

Crystal structure of the n-terminal efc/f-bar domain of syp1
Total Genus 111
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
111
sequence length
250
structure length
250
Chain Sequence
MTEQRTKYADSILTTKSPYEATETIRIRLSQVKLLNKDFYLLFKELANLKRNYAQQLRKIIAENEDITKILNAQMIESNVLTPQEMSAFRFNSLGELRNVWDTVIEELKSDLKSSTEYYNTLDQQVVRELKESVENNTSWRESKDLHSKLSKNAASIEHYSKNNENSSHLEEARRQWDQQSPYLFELFETIDYNRLDTLKNCMLRFQTSFSDYLLNTTKECETVMTKFLAFEPQSEIDRFAKDASQYNFQ
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Suppressor of yeast profilin deletion
publication title Syp1 is a conserved endocytic adaptor that contains domains involved in cargo selection and membrane tubulation.
pubmed doi rcsb
source organism Saccharomyces cerevisiae
molecule tags Endocytosis
total genus 111
structure length 250
sequence length 250
ec nomenclature
pdb deposition date 2009-02-13
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1270.60 Mainly Alpha Up-down Bundle Substrate Binding Domain Of Dnak; Chain:A; Domain 2 Arfaptin homology (AH) domain/BAR domain 3g9gA00
3QNIA 4WPEA 2FICA 4FZSA 2D1LA 2RAJA 3HAHA 4NSWA 1URUA 1I49A 4AKVA 1I4TA 3HAJA 1Y2OA 2Q13A 2C08A 3DYTA 3ACOA 3SOGA 3Q84A 3QE6A 4AVMA 1ZWWA 4ATMA 2D4CA 2X3VA 4DYLA 5C5BB 3LLLA 1X04A 2EFLA 2ELBA 4H8SA 5C5BA 2X3XA 2EFKA 3QWEA 3I2WA 4DCNC 2V0OA 2RAKA 4I1QA 2YKTA 1WDZA 3ABHA 3HAIA 3OK8A 3Q0KA 1I4LA 2Z0NA 3M3WA 1X03A 3G9GA 2Z0OA 3PLTA 4NQIA 4WPCA 2RAIA 2Z0VA 4BNEA 2X3WA 2Q12A 3CAZA 3SYVA 1I4DA
chains in the Genus database with same CATH superfamily
2FICA 4KIKA 3O3OB 1OA0A 2RT6A 4FZPA 2F1AA 4IM3A 2OBMA 3ER8C 4I1QA 2YKTA 4G6QA 1PS3A 4B9QA 2NCZA 2Z0OA 1UPXA 3CAZA 1I4DA 3CZNA 4IM2A 2YIAA 1HWWA 2EWFA 2YIBA 3SOGA 3QE6A 2JNKA 1ZWWA 3RV1A 2FYVA 2X3XA 1OAOA 2F7QA 2WINM 4WPCA 3DPPA 1SUFA 4WPEA 4PO2A 1DKZA 2N3KA 4H6HA 2RAJA 3GI7A 2C08A 3ACOA 4AZBA 1YWMA 4AZCA 4ATMA 4EZRA 4EZSA 4IM0A 3T48A 3PLTA 3SYVA 1U00A 2X5CA 1R34A 1QX1A 2O0I1 1E2UA 2JNSA 3D52A 1HTYA 2QXLA 2ZXQA 3I2WA 2RAKA 1TQVA 3BUIA 4JWIA 3DPQA 4IWPA 3OWGA 1GNTA 4EZXA 2GF4A 4EZOA 2OO2A 4EZUA 2OZNB 3VEBA 4E81A 4EZTA 2EX3B 2EFLA 2Z8YA 2LXYA 4UDYX 1I4LA 2YIVX 3M3WA 3I01A 3QNIA 1GN9A 4FZSA 3EJPA 1OA1A 3CZSA 1SU8A 3QA8A 4D8JA 2OBLA 3RV0A 3HAIA 3OK8A 4AZGA 3DPOA 3B52X 1X03A 3DDGA 4AZHA 3I39X 1I49A 2YI9A 1R33A 2ND1A 4NPHA 5C5BB 4IW0A 1JQKA 1TQUA 2QFFA 1WDZA 4R5KA 3DX4A 4R5LA 2Z0VA 4JNEA 3F7WA 2PY6A 2Q12A 3O3NB 3DX0A 1TQSA 5TKYA 4AKVA 2Q13A 2F7PA 1W9MA 2YL8A 4DCNC 1GNLA 3ABHA 5E84A 2GAFD 3KDRA 3L3PA 3EJSA 4BNEA 3LLLA 3FD9A 2MI7A 3VKHA 3HAHA 3B51X 4JN4A 3BUBA 3BUDA 2X3VA 3T4AG 1TQWA 2YL5A 4HR1A 4R5JA 2Z0NA 1QWUA 2WYIA 2YI8A 4JWDA 4NQIA 4E3CA 3ZEDA 3UITA 3D50A 2YLLA 3BVWA 3O3MB 1DKYA 3B53X 4AZCB 1QWNA 1O7DB 2YL6A 4EZYA 2OW6A 2PMRA 2QKWA 2ELBA 4EZWA 4FM3A 1HXKA 3CV5A 4JLCA 4AZ5A 3BLBA 3BVTA 5KBPA 4NSWA 4JWEA 3DX3A 3DYTA 3BUQA 4F00A 3DDFA 3EJRA 4DYLA 3CVRA 1X04A 4EZPA 2V0OA 3ERCC 3Q0KA 4AZ7A 3D4ZA 2GA9D 2F7OA 3BVUA 4EZVA 3EJUA 1E9VA 1I4TA 2ND0A 1SU7A 4EZZA 3Q84A 4M0MA 1MJGA 4F01A 3KAVA 2ALWA 4IWOA 2LM0A 4JWCA 2F1BA 4KIKB 4JNFA 1URUA 3T49A 3KAWA 3HAJA 3RPMA 3LVTA 4EZQA 4AVMA 2YL9A 3DX1A 3EJQA 2YLAA 1SU6A 3LMFA 3VEAA 1DKXA 3C7NA 2WYHA 2KHOA 1O7DC 3CKDA 1Y2OA 3T46A 3BVVA 3ER9B 4H6IA 4HY9A 3D51A 3A98A 3L3OM 4R5GA 1ZYLA 3EJTA 4IWQA 2D1LA 2F18A 3D2EA 1R5EA 3QNJA 3D4YA 5FLEX 3T47A 4HYBA 2EFKA 4R5IA 1LQ7A 4EZNA 1E1DA 3G9GA 4UDXX 2RAIA 4AZ6A 2X3WA 3D2FA 3DX2A 3BUPA 2F7RA 2D4CA 4AZIA 1TQTA 4H8SA 5C5BA 3BVXA 3QWEA 3I04A 4HR1B 5FIGA 4JL9A 4FZOA 2OW7A 3OHXM
chains in the Genus database with same CATH topology
3QNIA 4WPEA 2FICA 4FZSA 2D1LA 2RAJA 3HAHA 4NSWA 1URUA 1I49A 4AKVA 1I4TA 3HAJA 1Y2OA 2Q13A 2C08A 3DYTA 3ACOA 3SOGA 3Q84A 3QE6A 4AVMA 1ZWWA 4ATMA 2D4CA 2X3VA 4DYLA 5C5BB 3LLLA 1X04A 2EFLA 2ELBA 4H8SA 5C5BA 2X3XA 2EFKA 3QWEA 3I2WA 4DCNC 2V0OA 2RAKA 4I1QA 2YKTA 1WDZA 3ABHA 3HAIA 3OK8A 3Q0KA 1I4LA 2Z0NA 3M3WA 1X03A 3G9GA 2Z0OA 3PLTA 4NQIA 4WPCA 2RAIA 2Z0VA 4BNEA 2X3WA 2Q12A 3CAZA 3SYVA 1I4DA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3QNI A;  4WPE A;  2FIC A;  4FZS A;  2D1L A;  2RAJ A;  3HAH A;  4NSW A;  1URU A;  1I49 A;  4AKV A;  1I4T A;  3HAJ A;  1Y2O A;  2Q13 A;  2C08 A;  3DYT A;  3ACO A;  3SOG A;  3Q84 A;  3QE6 A;  4AVM A;  1ZWW A;  4ATM A;  2D4C A;  2X3V A;  4DYL A;  5C5B B;  3LLL A;  1X04 A;  2EFL A;  2ELB A;  4H8S A;  5C5B A;  2X3X A;  2EFK A;  3QWE A;  3I2W A;  4DCN C;  2V0O A;  2RAK A;  4I1Q A;  2YKT A;  1WDZ A;  3ABH A;  3HAI A;  3OK8 A;  3Q0K A;  1I4L A;  2Z0N A;  3M3W A;  1X03 A;  3G9G A;  2Z0O A;  3PLT A;  4NQI A;  4WPC A;  2RAI A;  2Z0V A;  4BNE A;  2X3W A;  2Q12 A;  3CAZ A;  3SYV A;  1I4D A; 
#chains in the Genus database with same CATH topology
 2FIC A;  4KIK A;  3O3O B;  1OA0 A;  2RT6 A;  4FZP A;  2F1A A;  4IM3 A;  2OBM A;  3ER8 C;  4I1Q A;  2YKT A;  4G6Q A;  1PS3 A;  4B9Q A;  2NCZ A;  2Z0O A;  1UPX A;  3CAZ A;  1I4D A;  3CZN A;  4IM2 A;  2YIA A;  1HWW A;  2EWF A;  2YIB A;  3SOG A;  3QE6 A;  2JNK A;  1ZWW A;  3RV1 A;  2FYV A;  2X3X A;  1OAO A;  2F7Q A;  2WIN M;  4WPC A;  3DPP A;  1SUF A;  4WPE A;  4PO2 A;  1DKZ A;  2N3K A;  4H6H A;  2RAJ A;  3GI7 A;  2C08 A;  3ACO A;  4AZB A;  1YWM A;  4AZC A;  4ATM A;  4EZR A;  4EZS A;  4IM0 A;  3T48 A;  3PLT A;  3SYV A;  1U00 A;  2X5C A;  1R34 A;  1QX1 A;  2O0I 1;  1E2U A;  2JNS A;  3D52 A;  1HTY A;  2QXL A;  2ZXQ A;  3I2W A;  2RAK A;  1TQV A;  3BUI A;  4JWI A;  3DPQ A;  4IWP A;  3OWG A;  1GNT A;  4EZX A;  2GF4 A;  4EZO A;  2OO2 A;  4EZU A;  2OZN B;  3VEB A;  4E81 A;  4EZT A;  2EX3 B;  2EFL A;  2Z8Y A;  2LXY A;  4UDY X;  1I4L A;  2YIV X;  3M3W A;  3I01 A;  3QNI A;  1GN9 A;  4FZS A;  3EJP A;  1OA1 A;  3CZS A;  1SU8 A;  3QA8 A;  4D8J A;  2OBL A;  3RV0 A;  3HAI A;  3OK8 A;  4AZG A;  3DPO A;  3B52 X;  1X03 A;  3DDG A;  4AZH A;  3I39 X;  1I49 A;  2YI9 A;  1R33 A;  2ND1 A;  4NPH A;  5C5B B;  4IW0 A;  1JQK A;  1TQU A;  2QFF A;  1WDZ A;  4R5K A;  3DX4 A;  4R5L A;  2Z0V A;  4JNE A;  3F7W A;  2PY6 A;  2Q12 A;  3O3N B;  3DX0 A;  1TQS A;  5TKY A;  4AKV A;  2Q13 A;  2F7P A;  1W9M A;  2YL8 A;  4DCN C;  1GNL A;  3ABH A;  5E84 A;  2GAF D;  3KDR A;  3L3P A;  3EJS A;  4BNE A;  3LLL A;  3FD9 A;  2MI7 A;  3VKH A;  3HAH A;  3B51 X;  4JN4 A;  3BUB A;  3BUD A;  2X3V A;  3T4A G;  1TQW A;  2YL5 A;  4HR1 A;  4R5J A;  2Z0N A;  1QWU A;  2WYI A;  2YI8 A;  4JWD A;  4NQI A;  4E3C A;  3ZED A;  3UIT A;  3D50 A;  2YLL A;  3BVW A;  3O3M B;  1DKY A;  3B53 X;  4AZC B;  1QWN A;  1O7D B;  2YL6 A;  4EZY A;  2OW6 A;  2PMR A;  2QKW A;  2ELB A;  4EZW A;  4FM3 A;  1HXK A;  3CV5 A;  4JLC A;  4AZ5 A;  3BLB A;  3BVT A;  5KBP A;  4NSW A;  4JWE A;  3DX3 A;  3DYT A;  3BUQ A;  4F00 A;  3DDF A;  3EJR A;  4DYL A;  3CVR A;  1X04 A;  4EZP A;  2V0O A;  3ERC C;  3Q0K A;  4AZ7 A;  3D4Z A;  2GA9 D;  2F7O A;  3BVU A;  4EZV A;  3EJU A;  1E9V A;  1I4T A;  2ND0 A;  1SU7 A;  4EZZ A;  3Q84 A;  4M0M A;  1MJG A;  4F01 A;  3KAV A;  2ALW A;  4IWO A;  2LM0 A;  4JWC A;  2F1B A;  4KIK B;  4JNF A;  1URU A;  3T49 A;  3KAW A;  3HAJ A;  3RPM A;  3LVT A;  4EZQ A;  4AVM A;  2YL9 A;  3DX1 A;  3EJQ A;  2YLA A;  1SU6 A;  3LMF A;  3VEA A;  1DKX A;  3C7N A;  2WYH A;  2KHO A;  1O7D C;  3CKD A;  1Y2O A;  3T46 A;  3BVV A;  3ER9 B;  4H6I A;  4HY9 A;  3D51 A;  3A98 A;  3L3O M;  4R5G A;  1ZYL A;  3EJT A;  4IWQ A;  2D1L A;  2F18 A;  3D2E A;  1R5E A;  3QNJ A;  3D4Y A;  5FLE X;  3T47 A;  4HYB A;  2EFK A;  4R5I A;  1LQ7 A;  4EZN A;  1E1D A;  3G9G A;  4UDX X;  2RAI A;  4AZ6 A;  2X3W A;  3D2F A;  3DX2 A;  3BUP A;  2F7R A;  2D4C A;  4AZI A;  1TQT A;  4H8S A;  5C5B A;  3BVX A;  3QWE A;  3I04 A;  4HR1 B;  5FIG A;  4JL9 A;  4FZO A;  2OW7 A;  3OHX M; 
#chains in the Genus database with same CATH homology
 3QNI A;  4WPE A;  2FIC A;  4FZS A;  2D1L A;  2RAJ A;  3HAH A;  4NSW A;  1URU A;  1I49 A;  4AKV A;  1I4T A;  3HAJ A;  1Y2O A;  2Q13 A;  2C08 A;  3DYT A;  3ACO A;  3SOG A;  3Q84 A;  3QE6 A;  4AVM A;  1ZWW A;  4ATM A;  2D4C A;  2X3V A;  4DYL A;  5C5B B;  3LLL A;  1X04 A;  2EFL A;  2ELB A;  4H8S A;  5C5B A;  2X3X A;  2EFK A;  3QWE A;  3I2W A;  4DCN C;  2V0O A;  2RAK A;  4I1Q A;  2YKT A;  1WDZ A;  3ABH A;  3HAI A;  3OK8 A;  3Q0K A;  1I4L A;  2Z0N A;  3M3W A;  1X03 A;  3G9G A;  2Z0O A;  3PLT A;  4NQI A;  4WPC A;  2RAI A;  2Z0V A;  4BNE A;  2X3W A;  2Q12 A;  3CAZ A;  3SYV A;  1I4D A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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