3G9GA

Crystal structure of the n-terminal efc/f-bar domain of syp1
Total Genus 111
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
111
sequence length
250
structure length
250
Chain Sequence
MTEQRTKYADSILTTKSPYEATETIRIRLSQVKLLNKDFYLLFKELANLKRNYAQQLRKIIAENEDITKILNAQMIESNVLTPQEMSAFRFNSLGELRNVWDTVIEELKSDLKSSTEYYNTLDQQVVRELKESVENNTSWRESKDLHSKLSKNAASIEHYSKNNENSSHLEEARRQWDQQSPYLFELFETIDYNRLDTLKNCMLRFQTSFSDYLLNTTKECETVMTKFLAFEPQSEIDRFAKDASQYNFQ
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Endocytosis
molecule keywords Suppressor of yeast profilin deletion
publication title Syp1 is a conserved endocytic adaptor that contains domains involved in cargo selection and membrane tubulation.
pubmed doi rcsb
source organism Saccharomyces cerevisiae
total genus 111
structure length 250
sequence length 250
ec nomenclature
pdb deposition date 2009-02-13
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1270.60 Mainly Alpha Up-down Bundle Substrate Binding Domain Of Dnak; Chain:A; Domain 2 Arfaptin homology (AH) domain/BAR domain 3g9gA00
2FICA 3QE6A 4ATMA 4DCNC 3I2WA 1X04A 2D4CA 2Z0VA 1I4DA 5C5BB 3HAHA 2X3VA 2EFLA 4H8SA 1X03A 3ACOA 4NQIA 4NSWA 1URUA 4WPEA 3SYVA 3Q0KA 2V0OA 3SOGA 2RAIA 4AKVA 2X3XA 3HAJA 3ABHA 4I1QA 3PLTA 1ZWWA 2YKTA 3M3WA 2C08A 2Q13A 3QWEA 4DYLA 3QNIA 2Z0OA 3Q84A 3CAZA 3G9GA 3HAIA 1Y2OA 2RAJA 2Q12A 4FZSA 5C5BA 1WDZA 3LLLA 1I4TA 1I4LA 2D1LA 2EFKA 1I49A 4WPCA 4AVMA 2ELBA 3DYTA 4BNEA 2RAKA 2X3WA 2Z0NA 3OK8A
chains in the Genus database with same CATH superfamily
2F7OA 3UITA 3I2WA 2Z0VA 2QXLA 4H8SA 1LQ7A 2QFFA 2YL9A 1TQVA 4EZNA 3Q0KA 3SOGA 1E9VA 1ZYLA 3ABHA 4JL9A 1QWNA 4IWQA 2Q12A 2YIBA 2LXYA 1O7DB 2Z8YA 2F1AA 3QE6A 1X04A 2F7QA 4KIKB 2V0OA 1E2UA 3HAJA 4AZHA 2ALWA 2YIAA 4JWEA 2ND1A 3CAZA 3BVVA 3D52A 3QNJA 3DDFA 1PS3A 4F00A 4R5IA 1SUFA 2NCZA 2Z0NA 2OBMA 4EZTA 5C5BB 2GF4A 4JWCA 2F7PA 2RAIA 2EWFA 1ZWWA 4IWOA 1OA1A 1SU8A 1I4DA 3D4ZA 3ER9B 4E81A 2OBLA 3D4YA 2OO2A 3CVRA 4IM2A 1R34A 3DX0A 2O0I1 1R5EA 4IW0A 4IM3A 3ER8C 4E3CA 4F01A 1DKXA 3D2FA 3A98A 1URUA 3DX4A 1OA0A 4FZOA 4EZSA 3L3PA 3QNIA 3DX2A 1UPXA 4FZSA 1GNTA 3CKDA 5FLEX 4WPCA 3EJSA 2ELBA 4JN4A 3EJPA 3DPOA 4AZ5A 2D4CA 3HAHA 1HXKA 1X03A 3EJTA 4EZUA 4M0MA 3DPQA 3B53X 3O3OB 5E84A 2YKTA 3EJQA 3GI7A 4H6IA 3LLLA 4EZPA 2YLLA 3OWGA 4EZQA 2FICA 2PMRA 4DCNC 1R33A 4HR1B 3BVWA 1SU6A 2N3KA 1OAOA 2ND0A 4JNFA 4JWDA 1TQSA 3T4AG 1E1DA 4BNEA 3DX3A 2X3WA 2YL5A 3OK8A 4NQIA 3ERCC 3RPMA 3SYVA 2KHOA 1U00A 3HAIA 4AZCB 4B9QA 1I4TA 1DKYA 4AZIA 4NPHA 4G6QA 3DX1A 2OZNB 1TQTA 1O7DC 2WINM 3VEAA 1W9MA 2GAFD 5TKYA 2YL6A 4I1QA 2QKWA 3M3WA 3B51X 4DYLA 3OHXM 3I04A 3EJUA 4HR1A 4HY9A 3D2EA 2YL8A 3B52X 4R5GA 4KIKA 1TQUA 3DYTA 4JLCA 2F1BA 3I39X 3LMFA 1QWUA 2YI9A 2X3VA 3ACOA 4WPEA 2WYIA 4FM3A 3ZEDA 2C08A 3DPPA 5C5BA 4AVMA 1TQWA 2YLAA 3QA8A 4FZPA 3KDRA 3DDGA 3BUQA 3BUIA 3PLTA 3QWEA 2Z0OA 3L3OM 4R5LA 2X5CA 1I4LA 3EJRA 2OW6A 3O3MB 1I49A 3LVTA 3BUPA 3BUDA 4EZWA 4HYBA 5FIGA 4PO2A 3BVXA 3FD9A 4EZVA 4IWPA 4EZXA 3VEBA 3CZSA 2JNSA 3D50A 3D51A 2RAKA 2EX3B 2LM0A 1SU7A 3F7WA 3CZNA 4AZ6A 3KAWA 3BVTA 4AKVA 4EZRA 4AZBA 3C7NA 2YI8A 4IM0A 2WYHA 4JWIA 2JNKA 4D8JA 4R5KA 3KAVA 4H6HA 1QX1A 2OW7A 2EFLA 3BVUA 4AZGA 4UDXX 3BLBA 1YWMA 4JNEA 3I01A 1GNLA 1DKZA 3BUBA 3G9GA 3T48A 2EFKA 3T49A 1HWWA 2GA9D 2F7RA 3CV5A 4R5JA 1MJGA 1HTYA 1Y2OA 2PY6A 2FYVA 2RAJA 2D1LA 2MI7A 4EZZA 2RT6A 4EZYA 4ATMA 4EZOA 1GN9A 3VKHA 5KBPA 4NSWA 4AZCA 3T46A 2X3XA 3RV1A 1JQKA 3RV0A 3O3NB 2Q13A 2F18A 3Q84A 4UDYX 3T47A 2YIVX 1WDZA 4AZ7A 2ZXQA
chains in the Genus database with same CATH topology
2FICA 3QE6A 4ATMA 4DCNC 3I2WA 1X04A 2D4CA 2Z0VA 1I4DA 5C5BB 3HAHA 2X3VA 2EFLA 4H8SA 1X03A 3ACOA 4NQIA 4NSWA 1URUA 4WPEA 3SYVA 3Q0KA 2V0OA 3SOGA 2RAIA 4AKVA 2X3XA 3HAJA 3ABHA 4I1QA 3PLTA 1ZWWA 2YKTA 3M3WA 2C08A 2Q13A 3QWEA 4DYLA 3QNIA 2Z0OA 3Q84A 3CAZA 3G9GA 3HAIA 1Y2OA 2RAJA 2Q12A 4FZSA 5C5BA 1WDZA 3LLLA 1I4TA 1I4LA 2D1LA 2EFKA 1I49A 4WPCA 4AVMA 2ELBA 3DYTA 4BNEA 2RAKA 2X3WA 2Z0NA 3OK8A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2FIC A;  3QE6 A;  4ATM A;  4DCN C;  3I2W A;  1X04 A;  2D4C A;  2Z0V A;  1I4D A;  5C5B B;  3HAH A;  2X3V A;  2EFL A;  4H8S A;  1X03 A;  3ACO A;  4NQI A;  4NSW A;  1URU A;  4WPE A;  3SYV A;  3Q0K A;  2V0O A;  3SOG A;  2RAI A;  4AKV A;  2X3X A;  3HAJ A;  3ABH A;  4I1Q A;  3PLT A;  1ZWW A;  2YKT A;  3M3W A;  2C08 A;  2Q13 A;  3QWE A;  4DYL A;  3QNI A;  2Z0O A;  3Q84 A;  3CAZ A;  3G9G A;  3HAI A;  1Y2O A;  2RAJ A;  2Q12 A;  4FZS A;  5C5B A;  1WDZ A;  3LLL A;  1I4T A;  1I4L A;  2D1L A;  2EFK A;  1I49 A;  4WPC A;  4AVM A;  2ELB A;  3DYT A;  4BNE A;  2RAK A;  2X3W A;  2Z0N A;  3OK8 A; 
#chains in the Genus database with same CATH topology
 2F7O A;  3UIT A;  3I2W A;  2Z0V A;  2QXL A;  4H8S A;  1LQ7 A;  2QFF A;  2YL9 A;  1TQV A;  4EZN A;  3Q0K A;  3SOG A;  1E9V A;  1ZYL A;  3ABH A;  4JL9 A;  1QWN A;  4IWQ A;  2Q12 A;  2YIB A;  2LXY A;  1O7D B;  2Z8Y A;  2F1A A;  3QE6 A;  1X04 A;  2F7Q A;  4KIK B;  2V0O A;  1E2U A;  3HAJ A;  4AZH A;  2ALW A;  2YIA A;  4JWE A;  2ND1 A;  3CAZ A;  3BVV A;  3D52 A;  3QNJ A;  3DDF A;  1PS3 A;  4F00 A;  4R5I A;  1SUF A;  2NCZ A;  2Z0N A;  2OBM A;  4EZT A;  5C5B B;  2GF4 A;  4JWC A;  2F7P A;  2RAI A;  2EWF A;  1ZWW A;  4IWO A;  1OA1 A;  1SU8 A;  1I4D A;  3D4Z A;  3ER9 B;  4E81 A;  2OBL A;  3D4Y A;  2OO2 A;  3CVR A;  4IM2 A;  1R34 A;  3DX0 A;  2O0I 1;  1R5E A;  4IW0 A;  4IM3 A;  3ER8 C;  4E3C A;  4F01 A;  1DKX A;  3D2F A;  3A98 A;  1URU A;  3DX4 A;  1OA0 A;  4FZO A;  4EZS A;  3L3P A;  3QNI A;  3DX2 A;  1UPX A;  4FZS A;  1GNT A;  3CKD A;  5FLE X;  4WPC A;  3EJS A;  2ELB A;  4JN4 A;  3EJP A;  3DPO A;  4AZ5 A;  2D4C A;  3HAH A;  1HXK A;  1X03 A;  3EJT A;  4EZU A;  4M0M A;  3DPQ A;  3B53 X;  3O3O B;  5E84 A;  2YKT A;  3EJQ A;  3GI7 A;  4H6I A;  3LLL A;  4EZP A;  2YLL A;  3OWG A;  4EZQ A;  2FIC A;  2PMR A;  4DCN C;  1R33 A;  4HR1 B;  3BVW A;  1SU6 A;  2N3K A;  1OAO A;  2ND0 A;  4JNF A;  4JWD A;  1TQS A;  3T4A G;  1E1D A;  4BNE A;  3DX3 A;  2X3W A;  2YL5 A;  3OK8 A;  4NQI A;  3ERC C;  3RPM A;  3SYV A;  2KHO A;  1U00 A;  3HAI A;  4AZC B;  4B9Q A;  1I4T A;  1DKY A;  4AZI A;  4NPH A;  4G6Q A;  3DX1 A;  2OZN B;  1TQT A;  1O7D C;  2WIN M;  3VEA A;  1W9M A;  2GAF D;  5TKY A;  2YL6 A;  4I1Q A;  2QKW A;  3M3W A;  3B51 X;  4DYL A;  3OHX M;  3I04 A;  3EJU A;  4HR1 A;  4HY9 A;  3D2E A;  2YL8 A;  3B52 X;  4R5G A;  4KIK A;  1TQU A;  3DYT A;  4JLC A;  2F1B A;  3I39 X;  3LMF A;  1QWU A;  2YI9 A;  2X3V A;  3ACO A;  4WPE A;  2WYI A;  4FM3 A;  3ZED A;  2C08 A;  3DPP A;  5C5B A;  4AVM A;  1TQW A;  2YLA A;  3QA8 A;  4FZP A;  3KDR A;  3DDG A;  3BUQ A;  3BUI A;  3PLT A;  3QWE A;  2Z0O A;  3L3O M;  4R5L A;  2X5C A;  1I4L A;  3EJR A;  2OW6 A;  3O3M B;  1I49 A;  3LVT A;  3BUP A;  3BUD A;  4EZW A;  4HYB A;  5FIG A;  4PO2 A;  3BVX A;  3FD9 A;  4EZV A;  4IWP A;  4EZX A;  3VEB A;  3CZS A;  2JNS A;  3D50 A;  3D51 A;  2RAK A;  2EX3 B;  2LM0 A;  1SU7 A;  3F7W A;  3CZN A;  4AZ6 A;  3KAW A;  3BVT A;  4AKV A;  4EZR A;  4AZB A;  3C7N A;  2YI8 A;  4IM0 A;  2WYH A;  4JWI A;  2JNK A;  4D8J A;  4R5K A;  3KAV A;  4H6H A;  1QX1 A;  2OW7 A;  2EFL A;  3BVU A;  4AZG A;  4UDX X;  3BLB A;  1YWM A;  4JNE A;  3I01 A;  1GNL A;  1DKZ A;  3BUB A;  3G9G A;  3T48 A;  2EFK A;  3T49 A;  1HWW A;  2GA9 D;  2F7R A;  3CV5 A;  4R5J A;  1MJG A;  1HTY A;  1Y2O A;  2PY6 A;  2FYV A;  2RAJ A;  2D1L A;  2MI7 A;  4EZZ A;  2RT6 A;  4EZY A;  4ATM A;  4EZO A;  1GN9 A;  3VKH A;  5KBP A;  4NSW A;  4AZC A;  3T46 A;  2X3X A;  3RV1 A;  1JQK A;  3RV0 A;  3O3N B;  2Q13 A;  2F18 A;  3Q84 A;  4UDY X;  3T47 A;  2YIV X;  1WDZ A;  4AZ7 A;  2ZXQ A; 
#chains in the Genus database with same CATH homology
 2FIC A;  3QE6 A;  4ATM A;  4DCN C;  3I2W A;  1X04 A;  2D4C A;  2Z0V A;  1I4D A;  5C5B B;  3HAH A;  2X3V A;  2EFL A;  4H8S A;  1X03 A;  3ACO A;  4NQI A;  4NSW A;  1URU A;  4WPE A;  3SYV A;  3Q0K A;  2V0O A;  3SOG A;  2RAI A;  4AKV A;  2X3X A;  3HAJ A;  3ABH A;  4I1Q A;  3PLT A;  1ZWW A;  2YKT A;  3M3W A;  2C08 A;  2Q13 A;  3QWE A;  4DYL A;  3QNI A;  2Z0O A;  3Q84 A;  3CAZ A;  3G9G A;  3HAI A;  1Y2O A;  2RAJ A;  2Q12 A;  4FZS A;  5C5B A;  1WDZ A;  3LLL A;  1I4T A;  1I4L A;  2D1L A;  2EFK A;  1I49 A;  4WPC A;  4AVM A;  2ELB A;  3DYT A;  4BNE A;  2RAK A;  2X3W A;  2Z0N A;  3OK8 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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