3G9GA

Crystal structure of the n-terminal efc/f-bar domain of syp1
Total Genus 111
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
111
sequence length
250
structure length
250
Chain Sequence
MTEQRTKYADSILTTKSPYEATETIRIRLSQVKLLNKDFYLLFKELANLKRNYAQQLRKIIAENEDITKILNAQMIESNVLTPQEMSAFRFNSLGELRNVWDTVIEELKSDLKSSTEYYNTLDQQVVRELKESVENNTSWRESKDLHSKLSKNAASIEHYSKNNENSSHLEEARRQWDQQSPYLFELFETIDYNRLDTLKNCMLRFQTSFSDYLLNTTKECETVMTKFLAFEPQSEIDRFAKDASQYNFQ
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Suppressor of yeast profilin deletion
publication title Syp1 is a conserved endocytic adaptor that contains domains involved in cargo selection and membrane tubulation.
pubmed doi rcsb
source organism Saccharomyces cerevisiae
molecule tags Endocytosis
total genus 111
structure length 250
sequence length 250
ec nomenclature
pdb deposition date 2009-02-13
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1270.60 Mainly Alpha Up-down Bundle Substrate Binding Domain Of Dnak; Chain:A; Domain 2 Arfaptin homology (AH) domain/BAR domain 3g9gA00
3HAIA 3I2WA 3QWEA 2FICA 2D1LA 2Q13A 2YKTA 3DYTA 4DYLA 1I4DA 2X3VA 2C08A 3HAHA 3OK8A 2RAJA 2D4CA 1WDZA 4NQIA 3QE6A 4WPCA 3CAZA 1X03A 3ACOA 2ELBA 5C5BA 1URUA 3HAJA 3Q84A 4BNEA 3SYVA 1Y2OA 3G9GA 2X3XA 1I49A 2Q12A 2EFLA 2RAIA 3M3WA 2Z0VA 3PLTA 4I1QA 1ZWWA 2EFKA 3LLLA 1I4TA 2Z0NA 1X04A 3ABHA 3QNIA 2RAKA 2V0OA 1I4LA 4ATMA 3SOGA 4NSWA 4FZSA 2Z0OA 4AVMA 4WPEA 3Q0KA 4AKVA 5C5BB 2X3WA 4DCNC 4H8SA
chains in the Genus database with same CATH superfamily
3D2FA 2WYHA 4PO2A 2OW6A 3L3OM 2F7OA 1DKZA 4EZOA 3LVTA 1W9MA 3A98A 2X3VA 1R34A 3CAZA 1E2UA 4IM3A 3HAJA 3CV5A 3OHXM 1MJGA 5TKYA 2X3XA 3DX4A 1ZWWA 3LLLA 4F01A 3BVTA 4DCNC 3BUDA 3D4ZA 3RV1A 1OA1A 2D4CA 2N3KA 4BNEA 2ND0A 3I39X 2F1AA 3DDFA 4NPHA 1SUFA 4EZYA 4NSWA 4EZSA 2Z0OA 5C5BB 2FYVA 4AZ7A 3FD9A 1TQWA 3DYTA 1GNTA 3ACOA 4EZUA 2ELBA 4R5JA 4JNFA 1E1DA 4EZVA 2YI8A 3RPMA 3T46A 2RAKA 1QWNA 3ZEDA 3LMFA 3B51X 2YKTA 3D2EA 3EJTA 1O7DC 1QWUA 1SU6A 3QE6A 4R5KA 2QFFA 1R5EA 3PLTA 2EFKA 2Z0NA 1HXKA 1X04A 3CKDA 4AZBA 2NCZA 4H8SA 1OA0A 4HY9A 1QX1A 4FM3A 3I04A 2O0I1 3BUPA 2C08A 2YL9A 4AZ5A 4EZTA 1PS3A 3EJRA 3T4AG 4M0MA 3OWGA 3D4YA 4AZCA 2YLLA 2OW7A 3BUQA 3HAIA 2OBMA 3CZSA 3DX1A 2YIAA 3KAWA 4H6IA 2F18A 4JN4A 4B9QA 2ALWA 1DKXA 5C5BA 2YIVX 3BVUA 2LXYA 4EZNA 3G9GA 3O3MB 3QNIA 2JNSA 4AKVA 5E84A 2F7RA 4KIKA 2PY6A 4IWQA 2PMRA 3I01A 2RAIA 4JWEA 4HR1A 2YL8A 2V0OA 4EZZA 3VEAA 3QWEA 1U00A 3HAHA 3RV0A 4IM2A 1WDZA 1YWMA 2YI9A 4E81A 3KDRA 4JNEA 1E9VA 3DPPA 2GAFD 2GF4A 1TQTA 1DKYA 1TQVA 1SU7A 3BLBA 3T48A 4R5LA 3BVVA 2QXLA 3B53X 4JWCA 4IM0A 3GI7A 1I4TA 3BVWA 4UDXX 4HYBA 4AVMA 2ND1A 3CZNA 4WPEA 1UPXA 1GN9A 1LQ7A 2FICA 3D52A 1HWWA 4F00A 1JQKA 3ER8C 1HTYA 2RAJA 3BVXA 3L3PA 2Z8YA 4H6HA 4AZIA 3SYVA 2RT6A 4I1QA 3CVRA 3DPOA 3DDGA 3ERCC 4ATMA 3VKHA 3QNJA 3T49A 3DPQA 2D1LA 1O7DB 3ER9B 4DYLA 3D50A 4NQIA 2OBLA 2F1BA 3QA8A 3EJQA 1SU8A 2YIBA 3B52X 2Q13A 2EX3B 2QKWA 3KAVA 2YLAA 4UDYX 1GNLA 2OZNB 4G6QA 3T47A 3EJUA 5FLEX 2JNKA 2Q12A 3DX0A 4AZ6A 2EFLA 2X5CA 4AZHA 2Z0VA 4EZPA 3BUIA 4JL9A 2WINM 2MI7A 4EZQA 5KBPA 4R5GA 3I2WA 4E3CA 4EZXA 2EWFA 4FZOA 5FIGA 3VEBA 1I4DA 3OK8A 4JWIA 4AZCB 4WPCA 2ZXQA 2F7PA 1URUA 3EJPA 1R33A 2YL6A 1I49A 3UITA 3D51A 3M3WA 4JLCA 2GA9D 2WYIA 1TQUA 1ZYLA 4FZSA 3F7WA 1OAOA 2X3WA 3DX2A 3O3OB 4IWPA 4EZWA 1Y2OA 3DX3A 4FZPA 3C7NA 2F7QA 4KIKB 3ABHA 4D8JA 1I4LA 3SOGA 4JWDA 1TQSA 3BUBA 4AZGA 4HR1B 3EJSA 2OO2A 2YL5A 4IW0A 1X03A 2LM0A 3Q84A 2KHOA 4R5IA 3O3NB 4IWOA 4EZRA 3Q0KA
chains in the Genus database with same CATH topology
3HAIA 3I2WA 3QWEA 2FICA 2D1LA 2Q13A 2YKTA 3DYTA 4DYLA 1I4DA 2X3VA 2C08A 3HAHA 3OK8A 2RAJA 2D4CA 1WDZA 4NQIA 3QE6A 4WPCA 3CAZA 1X03A 3ACOA 2ELBA 5C5BA 1URUA 3HAJA 3Q84A 4BNEA 3SYVA 1Y2OA 3G9GA 2X3XA 1I49A 2Q12A 2EFLA 2RAIA 3M3WA 2Z0VA 3PLTA 4I1QA 1ZWWA 2EFKA 3LLLA 1I4TA 2Z0NA 1X04A 3ABHA 3QNIA 2RAKA 2V0OA 1I4LA 4ATMA 3SOGA 4NSWA 4FZSA 2Z0OA 4AVMA 4WPEA 3Q0KA 4AKVA 5C5BB 2X3WA 4DCNC 4H8SA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3HAI A;  3I2W A;  3QWE A;  2FIC A;  2D1L A;  2Q13 A;  2YKT A;  3DYT A;  4DYL A;  1I4D A;  2X3V A;  2C08 A;  3HAH A;  3OK8 A;  2RAJ A;  2D4C A;  1WDZ A;  4NQI A;  3QE6 A;  4WPC A;  3CAZ A;  1X03 A;  3ACO A;  2ELB A;  5C5B A;  1URU A;  3HAJ A;  3Q84 A;  4BNE A;  3SYV A;  1Y2O A;  3G9G A;  2X3X A;  1I49 A;  2Q12 A;  2EFL A;  2RAI A;  3M3W A;  2Z0V A;  3PLT A;  4I1Q A;  1ZWW A;  2EFK A;  3LLL A;  1I4T A;  2Z0N A;  1X04 A;  3ABH A;  3QNI A;  2RAK A;  2V0O A;  1I4L A;  4ATM A;  3SOG A;  4NSW A;  4FZS A;  2Z0O A;  4AVM A;  4WPE A;  3Q0K A;  4AKV A;  5C5B B;  2X3W A;  4DCN C;  4H8S A; 
#chains in the Genus database with same CATH topology
 3D2F A;  2WYH A;  4PO2 A;  2OW6 A;  3L3O M;  2F7O A;  1DKZ A;  4EZO A;  3LVT A;  1W9M A;  3A98 A;  2X3V A;  1R34 A;  3CAZ A;  1E2U A;  4IM3 A;  3HAJ A;  3CV5 A;  3OHX M;  1MJG A;  5TKY A;  2X3X A;  3DX4 A;  1ZWW A;  3LLL A;  4F01 A;  3BVT A;  4DCN C;  3BUD A;  3D4Z A;  3RV1 A;  1OA1 A;  2D4C A;  2N3K A;  4BNE A;  2ND0 A;  3I39 X;  2F1A A;  3DDF A;  4NPH A;  1SUF A;  4EZY A;  4NSW A;  4EZS A;  2Z0O A;  5C5B B;  2FYV A;  4AZ7 A;  3FD9 A;  1TQW A;  3DYT A;  1GNT A;  3ACO A;  4EZU A;  2ELB A;  4R5J A;  4JNF A;  1E1D A;  4EZV A;  2YI8 A;  3RPM A;  3T46 A;  2RAK A;  1QWN A;  3ZED A;  3LMF A;  3B51 X;  2YKT A;  3D2E A;  3EJT A;  1O7D C;  1QWU A;  1SU6 A;  3QE6 A;  4R5K A;  2QFF A;  1R5E A;  3PLT A;  2EFK A;  2Z0N A;  1HXK A;  1X04 A;  3CKD A;  4AZB A;  2NCZ A;  4H8S A;  1OA0 A;  4HY9 A;  1QX1 A;  4FM3 A;  3I04 A;  2O0I 1;  3BUP A;  2C08 A;  2YL9 A;  4AZ5 A;  4EZT A;  1PS3 A;  3EJR A;  3T4A G;  4M0M A;  3OWG A;  3D4Y A;  4AZC A;  2YLL A;  2OW7 A;  3BUQ A;  3HAI A;  2OBM A;  3CZS A;  3DX1 A;  2YIA A;  3KAW A;  4H6I A;  2F18 A;  4JN4 A;  4B9Q A;  2ALW A;  1DKX A;  5C5B A;  2YIV X;  3BVU A;  2LXY A;  4EZN A;  3G9G A;  3O3M B;  3QNI A;  2JNS A;  4AKV A;  5E84 A;  2F7R A;  4KIK A;  2PY6 A;  4IWQ A;  2PMR A;  3I01 A;  2RAI A;  4JWE A;  4HR1 A;  2YL8 A;  2V0O A;  4EZZ A;  3VEA A;  3QWE A;  1U00 A;  3HAH A;  3RV0 A;  4IM2 A;  1WDZ A;  1YWM A;  2YI9 A;  4E81 A;  3KDR A;  4JNE A;  1E9V A;  3DPP A;  2GAF D;  2GF4 A;  1TQT A;  1DKY A;  1TQV A;  1SU7 A;  3BLB A;  3T48 A;  4R5L A;  3BVV A;  2QXL A;  3B53 X;  4JWC A;  4IM0 A;  3GI7 A;  1I4T A;  3BVW A;  4UDX X;  4HYB A;  4AVM A;  2ND1 A;  3CZN A;  4WPE A;  1UPX A;  1GN9 A;  1LQ7 A;  2FIC A;  3D52 A;  1HWW A;  4F00 A;  1JQK A;  3ER8 C;  1HTY A;  2RAJ A;  3BVX A;  3L3P A;  2Z8Y A;  4H6H A;  4AZI A;  3SYV A;  2RT6 A;  4I1Q A;  3CVR A;  3DPO A;  3DDG A;  3ERC C;  4ATM A;  3VKH A;  3QNJ A;  3T49 A;  3DPQ A;  2D1L A;  1O7D B;  3ER9 B;  4DYL A;  3D50 A;  4NQI A;  2OBL A;  2F1B A;  3QA8 A;  3EJQ A;  1SU8 A;  2YIB A;  3B52 X;  2Q13 A;  2EX3 B;  2QKW A;  3KAV A;  2YLA A;  4UDY X;  1GNL A;  2OZN B;  4G6Q A;  3T47 A;  3EJU A;  5FLE X;  2JNK A;  2Q12 A;  3DX0 A;  4AZ6 A;  2EFL A;  2X5C A;  4AZH A;  2Z0V A;  4EZP A;  3BUI A;  4JL9 A;  2WIN M;  2MI7 A;  4EZQ A;  5KBP A;  4R5G A;  3I2W A;  4E3C A;  4EZX A;  2EWF A;  4FZO A;  5FIG A;  3VEB A;  1I4D A;  3OK8 A;  4JWI A;  4AZC B;  4WPC A;  2ZXQ A;  2F7P A;  1URU A;  3EJP A;  1R33 A;  2YL6 A;  1I49 A;  3UIT A;  3D51 A;  3M3W A;  4JLC A;  2GA9 D;  2WYI A;  1TQU A;  1ZYL A;  4FZS A;  3F7W A;  1OAO A;  2X3W A;  3DX2 A;  3O3O B;  4IWP A;  4EZW A;  1Y2O A;  3DX3 A;  4FZP A;  3C7N A;  2F7Q A;  4KIK B;  3ABH A;  4D8J A;  1I4L A;  3SOG A;  4JWD A;  1TQS A;  3BUB A;  4AZG A;  4HR1 B;  3EJS A;  2OO2 A;  2YL5 A;  4IW0 A;  1X03 A;  2LM0 A;  3Q84 A;  2KHO A;  4R5I A;  3O3N B;  4IWO A;  4EZR A;  3Q0K A; 
#chains in the Genus database with same CATH homology
 3HAI A;  3I2W A;  3QWE A;  2FIC A;  2D1L A;  2Q13 A;  2YKT A;  3DYT A;  4DYL A;  1I4D A;  2X3V A;  2C08 A;  3HAH A;  3OK8 A;  2RAJ A;  2D4C A;  1WDZ A;  4NQI A;  3QE6 A;  4WPC A;  3CAZ A;  1X03 A;  3ACO A;  2ELB A;  5C5B A;  1URU A;  3HAJ A;  3Q84 A;  4BNE A;  3SYV A;  1Y2O A;  3G9G A;  2X3X A;  1I49 A;  2Q12 A;  2EFL A;  2RAI A;  3M3W A;  2Z0V A;  3PLT A;  4I1Q A;  1ZWW A;  2EFK A;  3LLL A;  1I4T A;  2Z0N A;  1X04 A;  3ABH A;  3QNI A;  2RAK A;  2V0O A;  1I4L A;  4ATM A;  3SOG A;  4NSW A;  4FZS A;  2Z0O A;  4AVM A;  4WPE A;  3Q0K A;  4AKV A;  5C5B B;  2X3W A;  4DCN C;  4H8S A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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