2O0I1

Crystal structure of the r185a mutant of the n-terminal domain of the group b streptococcus alpha c protein
Total Genus 52
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
52
sequence length
180
structure length
180
Chain Sequence
STIPGSAATLNTSITKNIQNGNAYIDLYDVKLGKIDPLQLIVLEQGFTAKYVFRQGTKYYGDVSQLQSTGRASLTYNIFGEDGLPHVKTDGQIDIVSVALTIYDSTTLRDKIEEVRTNANDPKWTEESATEVLTGLDTIKTDIDNNPKTQTDIDSKIVEVNELEKLLVLKLAAALEHHHH
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule keywords C protein alpha-antigen
publication title Identification of a glycosaminoglycan binding region of the alpha C protein that mediates entry of group B streptococci into host cells.
pubmed doi rcsb
source organism Streptococcus agalactiae serogroup ia
molecule tags Surface active protein
total genus 52
structure length 180
sequence length 180
ec nomenclature
pdb deposition date 2006-11-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
1 PF08829 AlphaC_N Alpha C protein N terminal
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1270.150 Mainly Alpha Up-down Bundle Substrate Binding Domain Of Dnak; Chain:A; Domain 2 Surface Active Protein 2o0i102
2.60.500.10 Mainly Beta Sandwich Surface Active Protein fold Surface Active Protein domain 2o0i101
2O0I1 1YWMA
chains in the Genus database with same CATH superfamily
4IM2A 3FD9A 3T4AG 2X5CA 3OHXM 1ZWWA 3KAWA 1X04A 4EZNA 1SU8A 3EJPA 5TKYA 2YLLA 3OK8A 3BVTA 4HR1B 4HYBA 1DKZA 2Q12A 2YLAA 2RT6A 2FICA 3DDFA 5FIGA 2F1AA 2WYIA 4F01A 1JQKA 3CKDA 4BNEA 4G6QA 1HXKA 3Q0KA 4R5KA 2YI9A 4HY9A 3DPOA 4JNFA 2OW6A 4EZZA 4AKVA 1WDZA 4IM0A 3SYVA 4JL9A 1I4LA 3EJTA 4WPCA 4EZOA 2GF4A 2YL9A 1GNTA 2RAJA 2WYHA 4AZCA 2JNSA 2D1LA 4FZOA 4WPEA 1R34A 3VEBA 3QNIA 1E9VA 3EJRA 3ER8C 1W9MA 4UDXX 4D8JA 3BLBA 5C5BA 1TQSA 2Z0OA 3QNJA 1PS3A 4UDYX 3BVWA 1X03A 1DKYA 3RV0A 3DPQA 1E2UA 1YWMA 1I4DA 1TQUA 4DCNC 1U00A 2YL5A 3ERCC 3BVUA 4E81A 4JWCA 4EZWA 3CZSA 4R5LA 1QWUA 3T46A 2PMRA 2X3VA 4AZBA 3VEAA 4JWDA 2PY6A 3BUDA 3ZEDA 5C5BB 4NSWA 4EZTA 2GAFD 4AZ6A 2YIVX 4AZ7A 4EZUA 4R5GA 2YL8A 1DKXA 3I2WA 3I01A 3O3NB 3BUQA 4M0MA 2O0I1 4ATMA 4R5JA 4F00A 1TQTA 3LMFA 4DYLA 5E84A 2ZXQA 1E1DA 3O3OB 5FLEX 1I49A 3UITA 4IW0A 1GNLA 4R5IA 3D4ZA 1TQWA 2F7OA 4FM3A 1UPXA 3CV5A 2F1BA 3DX0A 3D52A 4EZQA 4IM3A 4JWEA 3T47A 4I1QA 3ABHA 2WINM 3EJSA 1R33A 3D2FA 4EZVA 3HAJA 3PLTA 4PO2A 4JWIA 1TQVA 2EX3B 2YIAA 3CVRA 1SU6A 3BUPA 3O3MB 1OAOA 4FZSA 2V0OA 2QKWA 1I4TA 4NPHA 1HWWA 4KIKA 4AZGA 3DX2A 2LM0A 2F18A 4E3CA 3Q84A 3L3PA 3T48A 4AZCB 2Q13A 3HAIA 2YKTA 4JLCA 3I39X 1OA1A 1ZYLA 1O7DB 2F7QA 4HR1A 2OBMA 4NQIA 3D50A 1QWNA 2OZNB 3KDRA 2EFLA 4AZHA 4EZPA 3BVXA 2OBLA 4EZRA 3QE6A 1GN9A 3RV1A 3DX4A 2ELBA 3EJUA 4EZXA 1SUFA 3EJQA 4H6IA 2YIBA 1O7DC 3VKHA 3HAHA 2RAIA 2MI7A 3A98A 2GA9D 3RPMA 3LLLA 2JNKA 2RAKA 3F7WA 3I04A 2YL6A 1QX1A 2NCZA 1MJGA 4IWQA 4H6HA 4AZ5A 2FYVA 2QFFA 1Y2OA 3B51X 4FZPA 3B52X 4JNEA 3BUIA 1R5EA 3BUBA 4AVMA 4B9QA 1URUA 3BVVA 4EZSA 2Z0NA 2EFKA 3L3OM 2X3WA 2D4CA 3QA8A 5KBPA 3KAVA 2EWFA 3DX1A 3DX3A 2X3XA 3G9GA 4JN4A 3DPPA 4H8SA 4IWOA 1OA0A 3D2EA 3D4YA 4EZYA 2OO2A 3M3WA 2KHOA 2YI8A 2F7PA 4IWPA 3D51A 2N3KA 2Z0VA 3SOGA 3T49A 2ND0A 3DDGA 3GI7A 3C7NA 2LXYA 3CZNA 3LVTA 2QXLA 3ER9B 3DYTA 2C08A 1HTYA 2ND1A 2OW7A 3CAZA 3ACOA 2Z8YA 3OWGA 4AZIA 1LQ7A 3B53X 3QWEA 2F7RA 4KIKB 2ALWA 1SU7A
chains in the Genus database with same CATH topology
2O0I1 1YWMA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2O0I 1;  1YWM A; 
#chains in the Genus database with same CATH topology
 4IM2 A;  3FD9 A;  3T4A G;  2X5C A;  3OHX M;  1ZWW A;  3KAW A;  1X04 A;  4EZN A;  1SU8 A;  3EJP A;  5TKY A;  2YLL A;  3OK8 A;  3BVT A;  4HR1 B;  4HYB A;  1DKZ A;  2Q12 A;  2YLA A;  2RT6 A;  2FIC A;  3DDF A;  5FIG A;  2F1A A;  2WYI A;  4F01 A;  1JQK A;  3CKD A;  4BNE A;  4G6Q A;  1HXK A;  3Q0K A;  4R5K A;  2YI9 A;  4HY9 A;  3DPO A;  4JNF A;  2OW6 A;  4EZZ A;  4AKV A;  1WDZ A;  4IM0 A;  3SYV A;  4JL9 A;  1I4L A;  3EJT A;  4WPC A;  4EZO A;  2GF4 A;  2YL9 A;  1GNT A;  2RAJ A;  2WYH A;  4AZC A;  2JNS A;  2D1L A;  4FZO A;  4WPE A;  1R34 A;  3VEB A;  3QNI A;  1E9V A;  3EJR A;  3ER8 C;  1W9M A;  4UDX X;  4D8J A;  3BLB A;  5C5B A;  1TQS A;  2Z0O A;  3QNJ A;  1PS3 A;  4UDY X;  3BVW A;  1X03 A;  1DKY A;  3RV0 A;  3DPQ A;  1E2U A;  1YWM A;  1I4D A;  1TQU A;  4DCN C;  1U00 A;  2YL5 A;  3ERC C;  3BVU A;  4E81 A;  4JWC A;  4EZW A;  3CZS A;  4R5L A;  1QWU A;  3T46 A;  2PMR A;  2X3V A;  4AZB A;  3VEA A;  4JWD A;  2PY6 A;  3BUD A;  3ZED A;  5C5B B;  4NSW A;  4EZT A;  2GAF D;  4AZ6 A;  2YIV X;  4AZ7 A;  4EZU A;  4R5G A;  2YL8 A;  1DKX A;  3I2W A;  3I01 A;  3O3N B;  3BUQ A;  4M0M A;  2O0I 1;  4ATM A;  4R5J A;  4F00 A;  1TQT A;  3LMF A;  4DYL A;  5E84 A;  2ZXQ A;  1E1D A;  3O3O B;  5FLE X;  1I49 A;  3UIT A;  4IW0 A;  1GNL A;  4R5I A;  3D4Z A;  1TQW A;  2F7O A;  4FM3 A;  1UPX A;  3CV5 A;  2F1B A;  3DX0 A;  3D52 A;  4EZQ A;  4IM3 A;  4JWE A;  3T47 A;  4I1Q A;  3ABH A;  2WIN M;  3EJS A;  1R33 A;  3D2F A;  4EZV A;  3HAJ A;  3PLT A;  4PO2 A;  4JWI A;  1TQV A;  2EX3 B;  2YIA A;  3CVR A;  1SU6 A;  3BUP A;  3O3M B;  1OAO A;  4FZS A;  2V0O A;  2QKW A;  1I4T A;  4NPH A;  1HWW A;  4KIK A;  4AZG A;  3DX2 A;  2LM0 A;  2F18 A;  4E3C A;  3Q84 A;  3L3P A;  3T48 A;  4AZC B;  2Q13 A;  3HAI A;  2YKT A;  4JLC A;  3I39 X;  1OA1 A;  1ZYL A;  1O7D B;  2F7Q A;  4HR1 A;  2OBM A;  4NQI A;  3D50 A;  1QWN A;  2OZN B;  3KDR A;  2EFL A;  4AZH A;  4EZP A;  3BVX A;  2OBL A;  4EZR A;  3QE6 A;  1GN9 A;  3RV1 A;  3DX4 A;  2ELB A;  3EJU A;  4EZX A;  1SUF A;  3EJQ A;  4H6I A;  2YIB A;  1O7D C;  3VKH A;  3HAH A;  2RAI A;  2MI7 A;  3A98 A;  2GA9 D;  3RPM A;  3LLL A;  2JNK A;  2RAK A;  3F7W A;  3I04 A;  2YL6 A;  1QX1 A;  2NCZ A;  1MJG A;  4IWQ A;  4H6H A;  4AZ5 A;  2FYV A;  2QFF A;  1Y2O A;  3B51 X;  4FZP A;  3B52 X;  4JNE A;  3BUI A;  1R5E A;  3BUB A;  4AVM A;  4B9Q A;  1URU A;  3BVV A;  4EZS A;  2Z0N A;  2EFK A;  3L3O M;  2X3W A;  2D4C A;  3QA8 A;  5KBP A;  3KAV A;  2EWF A;  3DX1 A;  3DX3 A;  2X3X A;  3G9G A;  4JN4 A;  3DPP A;  4H8S A;  4IWO A;  1OA0 A;  3D2E A;  3D4Y A;  4EZY A;  2OO2 A;  3M3W A;  2KHO A;  2YI8 A;  2F7P A;  4IWP A;  3D51 A;  2N3K A;  2Z0V A;  3SOG A;  3T49 A;  2ND0 A;  3DDG A;  3GI7 A;  3C7N A;  2LXY A;  3CZN A;  3LVT A;  2QXL A;  3ER9 B;  3DYT A;  2C08 A;  1HTY A;  2ND1 A;  2OW7 A;  3CAZ A;  3ACO A;  2Z8Y A;  3OWG A;  4AZI A;  1LQ7 A;  3B53 X;  3QWE A;  2F7R A;  4KIK B;  2ALW A;  1SU7 A; 
#chains in the Genus database with same CATH homology
 2O0I 1;  1YWM A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...