2O0I1

Crystal structure of the r185a mutant of the n-terminal domain of the group b streptococcus alpha c protein
Total Genus 52
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
52
sequence length
180
structure length
180
Chain Sequence
STIPGSAATLNTSITKNIQNGNAYIDLYDVKLGKIDPLQLIVLEQGFTAKYVFRQGTKYYGDVSQLQSTGRASLTYNIFGEDGLPHVKTDGQIDIVSVALTIYDSTTLRDKIEEVRTNANDPKWTEESATEVLTGLDTIKTDIDNNPKTQTDIDSKIVEVNELEKLLVLKLAAALEHHHH
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Surface active protein
molecule keywords C protein alpha-antigen
publication title Identification of a glycosaminoglycan binding region of the alpha C protein that mediates entry of group B streptococci into host cells.
pubmed doi rcsb
source organism Streptococcus agalactiae serogroup ia
total genus 52
structure length 180
sequence length 180
ec nomenclature
pdb deposition date 2006-11-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
1 PF08829 AlphaC_N Alpha C protein N terminal
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1270.150 Mainly Alpha Up-down Bundle Substrate Binding Domain Of Dnak; Chain:A; Domain 2 Surface Active Protein 2o0i102
2.60.500.10 Mainly Beta Sandwich Surface Active Protein fold Surface Active Protein domain 2o0i101
2O0I1 1YWMA
chains in the Genus database with same CATH superfamily
4HY9A 1O7DB 2F7PA 3ACOA 3BVUA 3DX0A 2QKWA 4EZXA 4EZRA 2YI8A 1I49A 3D52A 3Q0KA 1OAOA 3SOGA 4AKVA 4UDXX 3HAJA 1TQWA 4G6QA 3B52X 4AVMA 4EZNA 3ABHA 4FZPA 3VKHA 4IWOA 3KDRA 1R34A 3DX1A 4EZUA 2Z0VA 3BUDA 4BNEA 1SUFA 4EZYA 3EJSA 3DX2A 3DPQA 1R33A 2OW7A 3DX3A 4AZBA 2RT6A 2JNKA 2OO2A 2WYIA 1QWUA 3SYVA 4PO2A 4EZTA 1TQSA 5E84A 2C08A 5TKYA 1SU8A 1HWWA 1DKXA 2YL9A 3D2FA 2EFLA 3ERCC 2EWFA 2YL6A 2GAFD 2GA9D 3C7NA 3A98A 3ER9B 4FM3A 2OZNB 2QFFA 3FD9A 1Y2OA 5C5BB 2MI7A 3BLBA 1HXKA 2WYHA 1X04A 2QXLA 1E2UA 4AZGA 1YWMA 4AZ6A 3DDFA 3QWEA 3QNJA 1DKZA 3BUPA 3CZSA 1WDZA 1TQTA 3CAZA 4AZCB 3GI7A 1R5EA 2OBLA 3O3OB 3RPMA 4F01A 3EJTA 3T46A 4HR1B 2RAKA 2YIBA 2D4CA 4IM0A 2YIAA 3O3NB 1DKYA 2YL5A 4R5JA 2F7QA 2YL8A 3ZEDA 4JWIA 3O3MB 4JN4A 4AZHA 4IWPA 3DYTA 2PY6A 2YIVX 4JNEA 4JWDA 2NCZA 2Q13A 2YLAA 4E81A 3D51A 5C5BA 3QA8A 4JLCA 3DDGA 2FICA 1GNLA 4R5IA 4FZOA 3DPOA 2Z0NA 4KIKB 4UDYX 2V0OA 3HAIA 1MJGA 3I2WA 2F1BA 1QWNA 4E3CA 3HAHA 1OA1A 3EJUA 1JQKA 2LM0A 4AZCA 3KAWA 4AZ5A 4HR1A 4B9QA 4EZPA 2X5CA 4WPEA 3ER8C 3B53X 4H6HA 4WPCA 4R5KA 3CKDA 4NPHA 3CV5A 4DYLA 3QNIA 4EZSA 4JWEA 1ZWWA 2F7RA 3BVWA 3OHXM 4R5GA 4NQIA 3D2EA 3DPPA 2KHOA 4JWCA 4AZIA 3EJRA 4JNFA 1URUA 2X3XA 4NSWA 3T4AG 3BVXA 1I4LA 2ALWA 1OA0A 4KIKA 4H6IA 3T48A 3T49A 4DCNC 3BVTA 4EZZA 3I01A 1SU7A 3PLTA 2GF4A 3OK8A 1I4TA 5KBPA 2PMRA 3VEBA 3CZNA 1U00A 2RAJA 1LQ7A 2Z8YA 1TQUA 2F1AA 1I4DA 1E1DA 2LXYA 1W9MA 2X3VA 2N3KA 3BUIA 2ND1A 3VEAA 2JNSA 4IM2A 2EX3B 1SU6A 4IM3A 1O7DC 2WINM 4HYBA 5FIGA 3KAVA 4AZ7A 2ND0A 2O0I1 3I04A 3D4YA 2YKTA 3UITA 1HTYA 2F7OA 1PS3A 3LMFA 3CVRA 1GN9A 1QX1A 3L3OM 4F00A 2D1LA 3D50A 1E9VA 2Z0OA 3G9GA 1ZYLA 2FYVA 2X3WA 3OWGA 1TQVA 4H8SA 4EZVA 1GNTA 3D4ZA 3DX4A 4I1QA 4ATMA 3M3WA 5FLEX 2RAIA 4IWQA 3F7WA 4R5LA 2EFKA 3BUQA 3RV1A 2YI9A 3EJQA 2YLLA 3RV0A 4D8JA 4FZSA 4IW0A 1UPXA 3EJPA 4EZWA 3LLLA 3T47A 3BVVA 3LVTA 2OW6A 1X03A 3I39X 3QE6A 2ELBA 3Q84A 2OBMA 4M0MA 2Q12A 3B51X 3L3PA 2ZXQA 3BUBA 2F18A 4JL9A 4EZOA 4EZQA
chains in the Genus database with same CATH topology
2O0I1 1YWMA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2O0I 1;  1YWM A; 
#chains in the Genus database with same CATH topology
 4HY9 A;  1O7D B;  2F7P A;  3ACO A;  3BVU A;  3DX0 A;  2QKW A;  4EZX A;  4EZR A;  2YI8 A;  1I49 A;  3D52 A;  3Q0K A;  1OAO A;  3SOG A;  4AKV A;  4UDX X;  3HAJ A;  1TQW A;  4G6Q A;  3B52 X;  4AVM A;  4EZN A;  3ABH A;  4FZP A;  3VKH A;  4IWO A;  3KDR A;  1R34 A;  3DX1 A;  4EZU A;  2Z0V A;  3BUD A;  4BNE A;  1SUF A;  4EZY A;  3EJS A;  3DX2 A;  3DPQ A;  1R33 A;  2OW7 A;  3DX3 A;  4AZB A;  2RT6 A;  2JNK A;  2OO2 A;  2WYI A;  1QWU A;  3SYV A;  4PO2 A;  4EZT A;  1TQS A;  5E84 A;  2C08 A;  5TKY A;  1SU8 A;  1HWW A;  1DKX A;  2YL9 A;  3D2F A;  2EFL A;  3ERC C;  2EWF A;  2YL6 A;  2GAF D;  2GA9 D;  3C7N A;  3A98 A;  3ER9 B;  4FM3 A;  2OZN B;  2QFF A;  3FD9 A;  1Y2O A;  5C5B B;  2MI7 A;  3BLB A;  1HXK A;  2WYH A;  1X04 A;  2QXL A;  1E2U A;  4AZG A;  1YWM A;  4AZ6 A;  3DDF A;  3QWE A;  3QNJ A;  1DKZ A;  3BUP A;  3CZS A;  1WDZ A;  1TQT A;  3CAZ A;  4AZC B;  3GI7 A;  1R5E A;  2OBL A;  3O3O B;  3RPM A;  4F01 A;  3EJT A;  3T46 A;  4HR1 B;  2RAK A;  2YIB A;  2D4C A;  4IM0 A;  2YIA A;  3O3N B;  1DKY A;  2YL5 A;  4R5J A;  2F7Q A;  2YL8 A;  3ZED A;  4JWI A;  3O3M B;  4JN4 A;  4AZH A;  4IWP A;  3DYT A;  2PY6 A;  2YIV X;  4JNE A;  4JWD A;  2NCZ A;  2Q13 A;  2YLA A;  4E81 A;  3D51 A;  5C5B A;  3QA8 A;  4JLC A;  3DDG A;  2FIC A;  1GNL A;  4R5I A;  4FZO A;  3DPO A;  2Z0N A;  4KIK B;  4UDY X;  2V0O A;  3HAI A;  1MJG A;  3I2W A;  2F1B A;  1QWN A;  4E3C A;  3HAH A;  1OA1 A;  3EJU A;  1JQK A;  2LM0 A;  4AZC A;  3KAW A;  4AZ5 A;  4HR1 A;  4B9Q A;  4EZP A;  2X5C A;  4WPE A;  3ER8 C;  3B53 X;  4H6H A;  4WPC A;  4R5K A;  3CKD A;  4NPH A;  3CV5 A;  4DYL A;  3QNI A;  4EZS A;  4JWE A;  1ZWW A;  2F7R A;  3BVW A;  3OHX M;  4R5G A;  4NQI A;  3D2E A;  3DPP A;  2KHO A;  4JWC A;  4AZI A;  3EJR A;  4JNF A;  1URU A;  2X3X A;  4NSW A;  3T4A G;  3BVX A;  1I4L A;  2ALW A;  1OA0 A;  4KIK A;  4H6I A;  3T48 A;  3T49 A;  4DCN C;  3BVT A;  4EZZ A;  3I01 A;  1SU7 A;  3PLT A;  2GF4 A;  3OK8 A;  1I4T A;  5KBP A;  2PMR A;  3VEB A;  3CZN A;  1U00 A;  2RAJ A;  1LQ7 A;  2Z8Y A;  1TQU A;  2F1A A;  1I4D A;  1E1D A;  2LXY A;  1W9M A;  2X3V A;  2N3K A;  3BUI A;  2ND1 A;  3VEA A;  2JNS A;  4IM2 A;  2EX3 B;  1SU6 A;  4IM3 A;  1O7D C;  2WIN M;  4HYB A;  5FIG A;  3KAV A;  4AZ7 A;  2ND0 A;  2O0I 1;  3I04 A;  3D4Y A;  2YKT A;  3UIT A;  1HTY A;  2F7O A;  1PS3 A;  3LMF A;  3CVR A;  1GN9 A;  1QX1 A;  3L3O M;  4F00 A;  2D1L A;  3D50 A;  1E9V A;  2Z0O A;  3G9G A;  1ZYL A;  2FYV A;  2X3W A;  3OWG A;  1TQV A;  4H8S A;  4EZV A;  1GNT A;  3D4Z A;  3DX4 A;  4I1Q A;  4ATM A;  3M3W A;  5FLE X;  2RAI A;  4IWQ A;  3F7W A;  4R5L A;  2EFK A;  3BUQ A;  3RV1 A;  2YI9 A;  3EJQ A;  2YLL A;  3RV0 A;  4D8J A;  4FZS A;  4IW0 A;  1UPX A;  3EJP A;  4EZW A;  3LLL A;  3T47 A;  3BVV A;  3LVT A;  2OW6 A;  1X03 A;  3I39 X;  3QE6 A;  2ELB A;  3Q84 A;  2OBM A;  4M0M A;  2Q12 A;  3B51 X;  3L3P A;  2ZXQ A;  3BUB A;  2F18 A;  4JL9 A;  4EZO A;  4EZQ A; 
#chains in the Genus database with same CATH homology
 2O0I 1;  1YWM A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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