2NCZA

Solution nmr structures of brd4 et domain in complex with nsd3_1 peptide
Total Genus 25
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
25
sequence length
83
structure length
83
Chain Sequence
SEEEDKCKPMSYEEKRQLSLDINKLPGEKLGRVVHIIQSREPSLKNSNPDEIEIDFETLKPSTLRELERYVTSCLRKKRKPQA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transcription/transferase
source organism Homo sapiens
publication title Structural Mechanism of Transcriptional Regulator NSD3 Recognition by the ET Domain of BRD4.
pubmed doi rcsb
molecule keywords Bromodomain-containing protein 4
total genus 25
structure length 83
sequence length 83
ec nomenclature
pdb deposition date 2016-04-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF17035 BET Bromodomain extra-terminal - transcription regulation
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1270.220 Mainly Alpha Up-down Bundle Substrate Binding Domain Of Dnak; Chain:A; Domain 2 Substrate Binding Domain Of Dnak; Chain:A; Domain 2 2nczA01
2NCZA 2JNSA 2ND1A 2ND0A 2N3KA
chains in the Genus database with same CATH superfamily
1WDZA 2WYHA 3D4YA 4UDXX 5E84A 4R5IA 4R5JA 3BLBA 4AZCB 1ZYLA 4EZWA 1GNLA 2F1AA 4EZVA 2F18A 1SU6A 3CVRA 1DKZA 3KAWA 4H6IA 1QWUA 1HWWA 1SUFA 3VKHA 5TKYA 4IM2A 1PS3A 3RV1A 2EFKA 4FZOA 1I4DA 4JWCA 3EJTA 2ELBA 3EJQA 2EWFA 4AZ7A 2X3WA 3C7NA 2OO2A 2YIVX 3I04A 1O7DB 4IW0A 4IWPA 3L3OM 2F1BA 2LXYA 1R5EA 1QWNA 4HR1B 1TQTA 2X5CA 1W9MA 2Z0NA 4EZYA 4ATMA 4F00A 5FIGA 4EZTA 3M3WA 3D52A 2YIAA 3EJRA 4JWDA 2F7OA 3BUDA 3EJSA 4HR1A 4IM0A 4H6HA 5KBPA 4I1QA 2OW6A 2YL8A 1O7DC 3EJPA 4F01A 3BVWA 4AZBA 4HY9A 1HXKA 3O3NB 2KHOA 3RPMA 3T49A 2OBMA 1R33A 3DPPA 3DDFA 1OA0A 2RAKA 2YLLA 3HAHA 1QX1A 2C08A 3DX4A 4JN4A 4E81A 3CAZA 3OWGA 2Z8YA 1R34A 4DCNC 2PY6A 4IM3A 5C5BB 1DKXA 3ER9B 2WINM 3I39X 2EFLA 3BVTA 1MJGA 4JNFA 1TQSA 4EZRA 3CKDA 4UDYX 1TQVA 3LVTA 2PMRA 2D4CA 5C5BA 2X3XA 4AZ6A 4FZSA 4JLCA 3ZEDA 4JWEA 3BUIA 3DX0A 3F7WA 2EX3B 2YL6A 3L3PA 3ABHA 2Q12A 3ERCC 4WPEA 1TQWA 3I01A 1Y2OA 1DKYA 1GNTA 3DX1A 4EZZA 4FZPA 1UPXA 3SYVA 3O3MB 2ND0A 4G6QA 4FM3A 1E2UA 4EZNA 2JNSA 3SOGA 4JL9A 2YL9A 2MI7A 2QFFA 4AZGA 2YLAA 3DX3A 3LMFA 3KDRA 2YI9A 2GA9D 5FLEX 3VEBA 3Q84A 3ER8C 3QNIA 3BVUA 3Q0KA 1I4TA 2YKTA 1GN9A 4AZIA 4KIKB 3HAIA 3BUQA 1HTYA 3G9GA 3B52X 2Z0OA 3FD9A 2X3VA 4WPCA 3D2EA 3QE6A 4EZPA 2ZXQA 3I2WA 2FYVA 4NSWA 4NQIA 3QNJA 3OHXM 4PO2A 4KIKA 3HAJA 4IWOA 2YIBA 2JNKA 4R5KA 2ND1A 2O0I1 2F7PA 3BUPA 2Z0VA 1URUA 2F7QA 4B9QA 2OBLA 3DYTA 1OA1A 3T4AG 2F7RA 3UITA 3B51X 2OZNB 3A98A 1E9VA 4H8SA 2WYIA 4JNEA 4R5LA 1I49A 2LM0A 2RAIA 1SU7A 4AKVA 3RV0A 2QKWA 3CZSA 1YWMA 1E1DA 3BVVA 3DPOA 2N3KA 4AZCA 3T46A 3BVXA 1U00A 3B53X 3D50A 1I4LA 3KAVA 2RT6A 3D51A 4E3CA 4AZHA 3ACOA 2QXLA 4EZXA 1ZWWA 3DPQA 4AVMA 4IWQA 4EZQA 3PLTA 2RAJA 4HYBA 1SU8A 4AZ5A 3O3OB 3CZNA 3QA8A 2GAFD 3LLLA 4JWIA 4NPHA 2OW7A 2ALWA 2V0OA 4M0MA 1LQ7A 2NCZA 3QWEA 3CV5A 1TQUA 1X04A 3D4ZA 2Q13A 4EZUA 1OAOA 4EZOA 2D1LA 3GI7A 3T48A 1X03A 1JQKA 4R5GA 3D2FA 4D8JA 4BNEA 4EZSA 3DDGA 3T47A 3EJUA 2GF4A 3DX2A 2YI8A 2FICA 4DYLA 2YL5A 3VEAA 3OK8A 3BUBA
chains in the Genus database with same CATH topology
4HY9A 2QFFA 1E1DA 3O3NB 2KHOA 3T49A 2OBMA 3DPOA 4UDXX 5E84A 2N3KA 3DPPA 3T46A 3LMFA 4R5IA 4R5JA 1OA0A 3KDRA 2YI9A 1U00A 1ZYLA 3B53X 4EZWA 1GNLA 3KAVA 2RT6A 4EZVA 2GA9D 5FLEX 4E3CA 4JN4A 4E81A 3VEBA 3OWGA 1SU6A 2Z8YA 1DKZA 3KAWA 2QXLA 2PY6A 4H6IA 4EZXA 3ER8C 4IM3A 1DKXA 1SUFA 1GN9A 3DPQA 4IWQA 4KIKB 4EZQA 3ER9B 2WINM 3I39X 3VKHA 4HYBA 1MJGA 4JNFA 1SU8A 4EZRA 5TKYA 3B52X 3FD9A 4IM2A 3O3OB 4UDYX 3QA8A 3RV1A 2GAFD 3D2EA 4EZPA 4JWIA 4NPHA 4JWCA 2EWFA 3C7NA 4M0MA 2YIVX 3I04A 3QNJA 4IW0A 3OHXM 2NCZA 4IWPA 4JLCA 4PO2A 4KIKA 3L3OM 3ZEDA 4JWEA 4IWOA 2YIBA 4HR1B 4EZUA 4R5KA 2ND1A 1OAOA 4EZOA 3F7WA 2X5CA 2EX3B 1W9MA 3GI7A 3T48A 4B9QA 3ERCC 1JQKA 4R5GA 2OBLA 3D2FA 1OA1A 3T4AG 4EZYA 3I01A 4F00A 4D8JA 5FIGA 1DKYA 4EZSA 3UITA 4EZTA 3T47A 2YIAA 4JWDA 3B51X 3A98A 4HR1A 1GNTA 4IM0A 1E9VA 4EZZA 4H6HA 1UPXA 3O3MB 2YI8A 4JNEA 2ND0A 4R5LA 4G6QA 4FM3A 2LM0A 1E2UA 1SU7A 4EZNA 3RV0A 4F01A 2JNSA 3VEAA 4JL9A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2NCZ A;  2JNS A;  2ND1 A;  2ND0 A;  2N3K A; 
#chains in the Genus database with same CATH topology
 1WDZ A;  2WYH A;  3D4Y A;  4UDX X;  5E84 A;  4R5I A;  4R5J A;  3BLB A;  4AZC B;  1ZYL A;  4EZW A;  1GNL A;  2F1A A;  4EZV A;  2F18 A;  1SU6 A;  3CVR A;  1DKZ A;  3KAW A;  4H6I A;  1QWU A;  1HWW A;  1SUF A;  3VKH A;  5TKY A;  4IM2 A;  1PS3 A;  3RV1 A;  2EFK A;  4FZO A;  1I4D A;  4JWC A;  3EJT A;  2ELB A;  3EJQ A;  2EWF A;  4AZ7 A;  2X3W A;  3C7N A;  2OO2 A;  2YIV X;  3I04 A;  1O7D B;  4IW0 A;  4IWP A;  3L3O M;  2F1B A;  2LXY A;  1R5E A;  1QWN A;  4HR1 B;  1TQT A;  2X5C A;  1W9M A;  2Z0N A;  4EZY A;  4ATM A;  4F00 A;  5FIG A;  4EZT A;  3M3W A;  3D52 A;  2YIA A;  3EJR A;  4JWD A;  2F7O A;  3BUD A;  3EJS A;  4HR1 A;  4IM0 A;  4H6H A;  5KBP A;  4I1Q A;  2OW6 A;  2YL8 A;  1O7D C;  3EJP A;  4F01 A;  3BVW A;  4AZB A;  4HY9 A;  1HXK A;  3O3N B;  2KHO A;  3RPM A;  3T49 A;  2OBM A;  1R33 A;  3DPP A;  3DDF A;  1OA0 A;  2RAK A;  2YLL A;  3HAH A;  1QX1 A;  2C08 A;  3DX4 A;  4JN4 A;  4E81 A;  3CAZ A;  3OWG A;  2Z8Y A;  1R34 A;  4DCN C;  2PY6 A;  4IM3 A;  5C5B B;  1DKX A;  3ER9 B;  2WIN M;  3I39 X;  2EFL A;  3BVT A;  1MJG A;  4JNF A;  1TQS A;  4EZR A;  3CKD A;  4UDY X;  1TQV A;  3LVT A;  2PMR A;  2D4C A;  5C5B A;  2X3X A;  4AZ6 A;  4FZS A;  4JLC A;  3ZED A;  4JWE A;  3BUI A;  3DX0 A;  3F7W A;  2EX3 B;  2YL6 A;  3L3P A;  3ABH A;  2Q12 A;  3ERC C;  4WPE A;  1TQW A;  3I01 A;  1Y2O A;  1DKY A;  1GNT A;  3DX1 A;  4EZZ A;  4FZP A;  1UPX A;  3SYV A;  3O3M B;  2ND0 A;  4G6Q A;  4FM3 A;  1E2U A;  4EZN A;  2JNS A;  3SOG A;  4JL9 A;  2YL9 A;  2MI7 A;  2QFF A;  4AZG A;  2YLA A;  3DX3 A;  3LMF A;  3KDR A;  2YI9 A;  2GA9 D;  5FLE X;  3VEB A;  3Q84 A;  3ER8 C;  3QNI A;  3BVU A;  3Q0K A;  1I4T A;  2YKT A;  1GN9 A;  4AZI A;  4KIK B;  3HAI A;  3BUQ A;  1HTY A;  3G9G A;  3B52 X;  2Z0O A;  3FD9 A;  2X3V A;  4WPC A;  3D2E A;  3QE6 A;  4EZP A;  2ZXQ A;  3I2W A;  2FYV A;  4NSW A;  4NQI A;  3QNJ A;  3OHX M;  4PO2 A;  4KIK A;  3HAJ A;  4IWO A;  2YIB A;  2JNK A;  4R5K A;  2ND1 A;  2O0I 1;  2F7P A;  3BUP A;  2Z0V A;  1URU A;  2F7Q A;  4B9Q A;  2OBL A;  3DYT A;  1OA1 A;  3T4A G;  2F7R A;  3UIT A;  3B51 X;  2OZN B;  3A98 A;  1E9V A;  4H8S A;  2WYI A;  4JNE A;  4R5L A;  1I49 A;  2LM0 A;  2RAI A;  1SU7 A;  4AKV A;  3RV0 A;  2QKW A;  3CZS A;  1YWM A;  1E1D A;  3BVV A;  3DPO A;  2N3K A;  4AZC A;  3T46 A;  3BVX A;  1U00 A;  3B53 X;  3D50 A;  1I4L A;  3KAV A;  2RT6 A;  3D51 A;  4E3C A;  4AZH A;  3ACO A;  2QXL A;  4EZX A;  1ZWW A;  3DPQ A;  4AVM A;  4IWQ A;  4EZQ A;  3PLT A;  2RAJ A;  4HYB A;  1SU8 A;  4AZ5 A;  3O3O B;  3CZN A;  3QA8 A;  2GAF D;  3LLL A;  4JWI A;  4NPH A;  2OW7 A;  2ALW A;  2V0O A;  4M0M A;  1LQ7 A;  2NCZ A;  3QWE A;  3CV5 A;  1TQU A;  1X04 A;  3D4Z A;  2Q13 A;  4EZU A;  1OAO A;  4EZO A;  2D1L A;  3GI7 A;  3T48 A;  1X03 A;  1JQK A;  4R5G A;  3D2F A;  4D8J A;  4BNE A;  4EZS A;  3DDG A;  3T47 A;  3EJU A;  2GF4 A;  3DX2 A;  2YI8 A;  2FIC A;  4DYL A;  2YL5 A;  3VEA A;  3OK8 A;  3BUB A; 
#chains in the Genus database with same CATH homology
 4HY9 A;  2QFF A;  1E1D A;  3O3N B;  2KHO A;  3T49 A;  2OBM A;  3DPO A;  4UDX X;  5E84 A;  2N3K A;  3DPP A;  3T46 A;  3LMF A;  4R5I A;  4R5J A;  1OA0 A;  3KDR A;  2YI9 A;  1U00 A;  1ZYL A;  3B53 X;  4EZW A;  1GNL A;  3KAV A;  2RT6 A;  4EZV A;  2GA9 D;  5FLE X;  4E3C A;  4JN4 A;  4E81 A;  3VEB A;  3OWG A;  1SU6 A;  2Z8Y A;  1DKZ A;  3KAW A;  2QXL A;  2PY6 A;  4H6I A;  4EZX A;  3ER8 C;  4IM3 A;  1DKX A;  1SUF A;  1GN9 A;  3DPQ A;  4IWQ A;  4KIK B;  4EZQ A;  3ER9 B;  2WIN M;  3I39 X;  3VKH A;  4HYB A;  1MJG A;  4JNF A;  1SU8 A;  4EZR A;  5TKY A;  3B52 X;  3FD9 A;  4IM2 A;  3O3O B;  4UDY X;  3QA8 A;  3RV1 A;  2GAF D;  3D2E A;  4EZP A;  4JWI A;  4NPH A;  4JWC A;  2EWF A;  3C7N A;  4M0M A;  2YIV X;  3I04 A;  3QNJ A;  4IW0 A;  3OHX M;  2NCZ A;  4IWP A;  4JLC A;  4PO2 A;  4KIK A;  3L3O M;  3ZED A;  4JWE A;  4IWO A;  2YIB A;  4HR1 B;  4EZU A;  4R5K A;  2ND1 A;  1OAO A;  4EZO A;  3F7W A;  2X5C A;  2EX3 B;  1W9M A;  3GI7 A;  3T48 A;  4B9Q A;  3ERC C;  1JQK A;  4R5G A;  2OBL A;  3D2F A;  1OA1 A;  3T4A G;  4EZY A;  3I01 A;  4F00 A;  4D8J A;  5FIG A;  1DKY A;  4EZS A;  3UIT A;  4EZT A;  3T47 A;  2YIA A;  4JWD A;  3B51 X;  3A98 A;  4HR1 A;  1GNT A;  4IM0 A;  1E9V A;  4EZZ A;  4H6H A;  1UPX A;  3O3M B;  2YI8 A;  4JNE A;  2ND0 A;  4R5L A;  4G6Q A;  4FM3 A;  2LM0 A;  1E2U A;  1SU7 A;  4EZN A;  3RV0 A;  4F01 A;  2JNS A;  3VEA A;  4JL9 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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