1ZWWA

Crystal structure of endophilin-a1 bar domain
Total Genus 86
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
86
sequence length
220
structure length
199
Chain Sequence
TKLDDDFKEMERKVDVTSRAVMEIMTKTIEYLQPNPASRPQAEALLAEAMLKFGRELGDDCNFGPALGEVGEAMRELSEVKDSLDMEVKQNFIDPLQNLHDKDLREIQHHLKKLEGRRLDFGYKKKRQGKIPDEELRQALEKFDESKEIAESSMFNLLEMDIEQVSQLSALVQAQLEYHKQAVQILQQVTVRLEERIRQ
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
source organism Mus musculus
publication title Crystal Structure of the Endophilin-A1 BAR Domain.
pubmed doi rcsb
molecule keywords SH3-containing GRB2-like protein 2
total genus 86
structure length 199
sequence length 220
chains with identical sequence B
ec nomenclature ec 2.3.1.-:
pdb deposition date 2005-06-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03114 BAR BAR domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1270.60 Mainly Alpha Up-down Bundle Substrate Binding Domain Of Dnak; Chain:A; Domain 2 Arfaptin homology (AH) domain/BAR domain 1zwwA00
1I4DA 2YKTA 3LLLA 2RAKA 1X04A 4FZSA 3QNIA 1I4LA 4H8SA 4I1QA 4WPCA 2Q12A 3HAIA 1X03A 3CAZA 3OK8A 3HAHA 3M3WA 3PLTA 4BNEA 2Z0NA 3ACOA 5C5BB 4DYLA 3ABHA 3DYTA 2EFKA 2Z0OA 1WDZA 3SYVA 4NQIA 1Y2OA 2D1LA 1URUA 1ZWWA 1I49A 3Q0KA 4NSWA 1I4TA 3Q84A 2ELBA 3HAJA 4DCNC 2V0OA 4AVMA 3QWEA 5C5BA 3QE6A 3I2WA 2RAIA 2D4CA 2X3VA 4WPEA 2FICA 2Z0VA 2RAJA 4AKVA 2EFLA 2Q13A 2X3XA 3G9GA 2X3WA 4ATMA 3SOGA 2C08A
chains in the Genus database with same CATH superfamily
3D51A 4H8SA 4EZXA 4JWDA 3HAIA 3PLTA 2F7RA 3DPOA 3QE6A 2MI7A 2F7QA 5E84A 2RAJA 2QFFA 3UITA 2F1BA 2X3XA 3G9GA 3LLLA 4FZSA 4HR1B 4D8JA 4H6IA 4AZGA 2OW7A 1MJGA 1WDZA 4AZHA 3GI7A 4NSWA 2ELBA 4EZVA 3D2EA 4AVMA 4EZSA 3B52X 4HY9A 3EJSA 3ERCC 5KBPA 2YL6A 4AKVA 2ALWA 3OHXM 2RT6A 1I4LA 3O3MB 3DPQA 3DDFA 4AZIA 1R5EA 3CAZA 3OK8A 4F00A 1GNLA 3BVXA 3T49A 2Z0OA 1URUA 1I49A 4R5IA 1YWMA 2N3KA 2ND0A 4AZ7A 3CV5A 4WPEA 3BUBA 1E1DA 3SOGA 1O7DB 3EJPA 2YLAA 2YL9A 2Q12A 3DPPA 1E9VA 4E3CA 3EJQA 2PMRA 3DX0A 4G6QA 4EZZA 3L3PA 3RPMA 3D2FA 4JWEA 4EZWA 3ER9B 2RAIA 2WYIA 2YIAA 2FICA 2C08A 4NPHA 4IM3A 2WYHA 1O7DC 2KHOA 2OBLA 1E2UA 2ND1A 2LXYA 2D1LA 2QXLA 3DX3A 5C5BA 4EZNA 4R5LA 3D4ZA 3CKDA 1HTYA 3BVTA 1DKYA 4ATMA 2ZXQA 2GF4A 3BVUA 3CVRA 3F7WA 3DDGA 1OA1A 3DYTA 2Z8YA 3HAJA 1QWNA 2D4CA 3KAVA 4EZQA 4KIKB 3QA8A 2YL5A 4R5GA 4EZTA 1R33A 4BNEA 4IWPA 4AZCA 2JNKA 4UDXX 2EFKA 3LMFA 3ZEDA 3Q84A 1GNTA 2YI9A 3EJTA 3I2WA 1TQSA 3L3OM 3D50A 4R5JA 4JWCA 1TQWA 2YIVX 4EZOA 3BVVA 3FD9A 3QNIA 3D4YA 2O0I1 3DX4A 3OWGA 4NQIA 3T47A 2F18A 3I39X 1DKZA 2JNSA 1R34A 4AZ6A 3BUQA 3I01A 2F1AA 3KAWA 4IM2A 3RV1A 4JN4A 3CZNA 3EJUA 1OA0A 4FZOA 4HR1A 4E81A 3LVTA 1U00A 1ZWWA 4F01A 1HXKA 3O3NB 2X3VA 4IWQA 2EFLA 3I04A 4I1QA 1X04A 1W9MA 4AZBA 2EWFA 4DYLA 4R5KA 4DCNC 1LQ7A 1ZYLA 1TQVA 3A98A 2X3WA 4EZUA 4JL9A 4JLCA 2OW6A 1X03A 3DX1A 2FYVA 3T4AG 4M0MA 1QX1A 2GA9D 5TKYA 2QKWA 2OZNB 3VEBA 2YIBA 3EJRA 3DX2A 3CZSA 4WPCA 4IWOA 3T48A 1SU7A 4EZPA 4PO2A 2Z0NA 4H6HA 3B53X 4FZPA 1JQKA 2LM0A 4IW0A 4JWIA 4JNFA 3BVWA 1I4DA 1OAOA 3C7NA 4B9QA 2PY6A 2OO2A 3ACOA 3D52A 4FM3A 4EZYA 3VKHA 1SU8A 1Y2OA 3T46A 2V0OA 2X5CA 1QWUA 2F7OA 4AZ5A 1PS3A 2OBMA 2YI8A 1GN9A 5FIGA 2NCZA 3ER8C 4KIKA 3BUIA 5C5BB 3ABHA 2YLLA 2YL8A 1DKXA 4HYBA 3O3OB 4IM0A 1TQTA 2EX3B 3QNJA 2Q13A 4EZRA 3HAHA 2WINM 1I4TA 3KDRA 3BUDA 2GAFD 3QWEA 1HWWA 4UDYX 5FLEX 2Z0VA 2YKTA 2RAKA 4AZCB 3B51X 3BLBA 3M3WA 1SU6A 3SYVA 3Q0KA 3VEAA 1TQUA 4JNEA 1UPXA 1SUFA 3BUPA 2F7PA 3RV0A
chains in the Genus database with same CATH topology
1I4DA 2YKTA 3LLLA 2RAKA 1X04A 4FZSA 3QNIA 1I4LA 4H8SA 4I1QA 4WPCA 2Q12A 3HAIA 1X03A 3CAZA 3OK8A 3HAHA 3M3WA 3PLTA 4BNEA 2Z0NA 3ACOA 5C5BB 4DYLA 3ABHA 3DYTA 2EFKA 2Z0OA 1WDZA 3SYVA 4NQIA 1Y2OA 2D1LA 1URUA 1ZWWA 1I49A 3Q0KA 4NSWA 1I4TA 3Q84A 2ELBA 3HAJA 4DCNC 2V0OA 4AVMA 3QWEA 5C5BA 3QE6A 3I2WA 2RAIA 2D4CA 2X3VA 4WPEA 2FICA 2Z0VA 2RAJA 4AKVA 2EFLA 2Q13A 2X3XA 3G9GA 2X3WA 4ATMA 3SOGA 2C08A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1I4D A;  2YKT A;  3LLL A;  2RAK A;  1X04 A;  4FZS A;  3QNI A;  1I4L A;  4H8S A;  4I1Q A;  4WPC A;  2Q12 A;  3HAI A;  1X03 A;  3CAZ A;  3OK8 A;  3HAH A;  3M3W A;  3PLT A;  4BNE A;  2Z0N A;  3ACO A;  5C5B B;  4DYL A;  3ABH A;  3DYT A;  2EFK A;  2Z0O A;  1WDZ A;  3SYV A;  4NQI A;  1Y2O A;  2D1L A;  1URU A;  1ZWW A;  1I49 A;  3Q0K A;  4NSW A;  1I4T A;  3Q84 A;  2ELB A;  3HAJ A;  4DCN C;  2V0O A;  4AVM A;  3QWE A;  5C5B A;  3QE6 A;  3I2W A;  2RAI A;  2D4C A;  2X3V A;  4WPE A;  2FIC A;  2Z0V A;  2RAJ A;  4AKV A;  2EFL A;  2Q13 A;  2X3X A;  3G9G A;  2X3W A;  4ATM A;  3SOG A;  2C08 A; 
#chains in the Genus database with same CATH topology
 3D51 A;  4H8S A;  4EZX A;  4JWD A;  3HAI A;  3PLT A;  2F7R A;  3DPO A;  3QE6 A;  2MI7 A;  2F7Q A;  5E84 A;  2RAJ A;  2QFF A;  3UIT A;  2F1B A;  2X3X A;  3G9G A;  3LLL A;  4FZS A;  4HR1 B;  4D8J A;  4H6I A;  4AZG A;  2OW7 A;  1MJG A;  1WDZ A;  4AZH A;  3GI7 A;  4NSW A;  2ELB A;  4EZV A;  3D2E A;  4AVM A;  4EZS A;  3B52 X;  4HY9 A;  3EJS A;  3ERC C;  5KBP A;  2YL6 A;  4AKV A;  2ALW A;  3OHX M;  2RT6 A;  1I4L A;  3O3M B;  3DPQ A;  3DDF A;  4AZI A;  1R5E A;  3CAZ A;  3OK8 A;  4F00 A;  1GNL A;  3BVX A;  3T49 A;  2Z0O A;  1URU A;  1I49 A;  4R5I A;  1YWM A;  2N3K A;  2ND0 A;  4AZ7 A;  3CV5 A;  4WPE A;  3BUB A;  1E1D A;  3SOG A;  1O7D B;  3EJP A;  2YLA A;  2YL9 A;  2Q12 A;  3DPP A;  1E9V A;  4E3C A;  3EJQ A;  2PMR A;  3DX0 A;  4G6Q A;  4EZZ A;  3L3P A;  3RPM A;  3D2F A;  4JWE A;  4EZW A;  3ER9 B;  2RAI A;  2WYI A;  2YIA A;  2FIC A;  2C08 A;  4NPH A;  4IM3 A;  2WYH A;  1O7D C;  2KHO A;  2OBL A;  1E2U A;  2ND1 A;  2LXY A;  2D1L A;  2QXL A;  3DX3 A;  5C5B A;  4EZN A;  4R5L A;  3D4Z A;  3CKD A;  1HTY A;  3BVT A;  1DKY A;  4ATM A;  2ZXQ A;  2GF4 A;  3BVU A;  3CVR A;  3F7W A;  3DDG A;  1OA1 A;  3DYT A;  2Z8Y A;  3HAJ A;  1QWN A;  2D4C A;  3KAV A;  4EZQ A;  4KIK B;  3QA8 A;  2YL5 A;  4R5G A;  4EZT A;  1R33 A;  4BNE A;  4IWP A;  4AZC A;  2JNK A;  4UDX X;  2EFK A;  3LMF A;  3ZED A;  3Q84 A;  1GNT A;  2YI9 A;  3EJT A;  3I2W A;  1TQS A;  3L3O M;  3D50 A;  4R5J A;  4JWC A;  1TQW A;  2YIV X;  4EZO A;  3BVV A;  3FD9 A;  3QNI A;  3D4Y A;  2O0I 1;  3DX4 A;  3OWG A;  4NQI A;  3T47 A;  2F18 A;  3I39 X;  1DKZ A;  2JNS A;  1R34 A;  4AZ6 A;  3BUQ A;  3I01 A;  2F1A A;  3KAW A;  4IM2 A;  3RV1 A;  4JN4 A;  3CZN A;  3EJU A;  1OA0 A;  4FZO A;  4HR1 A;  4E81 A;  3LVT A;  1U00 A;  1ZWW A;  4F01 A;  1HXK A;  3O3N B;  2X3V A;  4IWQ A;  2EFL A;  3I04 A;  4I1Q A;  1X04 A;  1W9M A;  4AZB A;  2EWF A;  4DYL A;  4R5K A;  4DCN C;  1LQ7 A;  1ZYL A;  1TQV A;  3A98 A;  2X3W A;  4EZU A;  4JL9 A;  4JLC A;  2OW6 A;  1X03 A;  3DX1 A;  2FYV A;  3T4A G;  4M0M A;  1QX1 A;  2GA9 D;  5TKY A;  2QKW A;  2OZN B;  3VEB A;  2YIB A;  3EJR A;  3DX2 A;  3CZS A;  4WPC A;  4IWO A;  3T48 A;  1SU7 A;  4EZP A;  4PO2 A;  2Z0N A;  4H6H A;  3B53 X;  4FZP A;  1JQK A;  2LM0 A;  4IW0 A;  4JWI A;  4JNF A;  3BVW A;  1I4D A;  1OAO A;  3C7N A;  4B9Q A;  2PY6 A;  2OO2 A;  3ACO A;  3D52 A;  4FM3 A;  4EZY A;  3VKH A;  1SU8 A;  1Y2O A;  3T46 A;  2V0O A;  2X5C A;  1QWU A;  2F7O A;  4AZ5 A;  1PS3 A;  2OBM A;  2YI8 A;  1GN9 A;  5FIG A;  2NCZ A;  3ER8 C;  4KIK A;  3BUI A;  5C5B B;  3ABH A;  2YLL A;  2YL8 A;  1DKX A;  4HYB A;  3O3O B;  4IM0 A;  1TQT A;  2EX3 B;  3QNJ A;  2Q13 A;  4EZR A;  3HAH A;  2WIN M;  1I4T A;  3KDR A;  3BUD A;  2GAF D;  3QWE A;  1HWW A;  4UDY X;  5FLE X;  2Z0V A;  2YKT A;  2RAK A;  4AZC B;  3B51 X;  3BLB A;  3M3W A;  1SU6 A;  3SYV A;  3Q0K A;  3VEA A;  1TQU A;  4JNE A;  1UPX A;  1SUF A;  3BUP A;  2F7P A;  3RV0 A; 
#chains in the Genus database with same CATH homology
 1I4D A;  2YKT A;  3LLL A;  2RAK A;  1X04 A;  4FZS A;  3QNI A;  1I4L A;  4H8S A;  4I1Q A;  4WPC A;  2Q12 A;  3HAI A;  1X03 A;  3CAZ A;  3OK8 A;  3HAH A;  3M3W A;  3PLT A;  4BNE A;  2Z0N A;  3ACO A;  5C5B B;  4DYL A;  3ABH A;  3DYT A;  2EFK A;  2Z0O A;  1WDZ A;  3SYV A;  4NQI A;  1Y2O A;  2D1L A;  1URU A;  1ZWW A;  1I49 A;  3Q0K A;  4NSW A;  1I4T A;  3Q84 A;  2ELB A;  3HAJ A;  4DCN C;  2V0O A;  4AVM A;  3QWE A;  5C5B A;  3QE6 A;  3I2W A;  2RAI A;  2D4C A;  2X3V A;  4WPE A;  2FIC A;  2Z0V A;  2RAJ A;  4AKV A;  2EFL A;  2Q13 A;  2X3X A;  3G9G A;  2X3W A;  4ATM A;  3SOG A;  2C08 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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