3QWEA

Crystal structure of the n-terminal domain of the gem interacting protein
Total Genus 126
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
126
sequence length
273
structure length
260
Chain Sequence
GEELDLRLIRTKGGVDAALEYAKTWSRYAKELLAWTEKRASYELEFAKSTMKIAEAGKVSIQQQSHMPLQYIYTLFLEHDLSLGTLAMETVAQQKRDYYQPLAAKRTEIEKWRKEFKEQWMKEQKRMNEAVQALRRAQLQYVQRSEDLRARSQGSKQQERRRRSREEAQAKAQEAEALYQACVREANARQQDLEIAKQRIVSHVRKLVFQGDEVLRRVTLSLFGLRGAQAERGPRAFAALAECCAPFEPGQRYQEFVRAL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Protein binding
molecule keywords GEM-interacting protein
publication title Crystal structure of the N-terminal domain of the GEM interacting protein
rcsb
source organism Homo sapiens
total genus 126
structure length 260
sequence length 273
ec nomenclature
pdb deposition date 2011-02-28
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1270.60 Mainly Alpha Up-down Bundle Substrate Binding Domain Of Dnak; Chain:A; Domain 2 Arfaptin homology (AH) domain/BAR domain 3qweA00
1I4LA 1URUA 2Z0OA 4AKVA 4AVMA 3ABHA 3Q84A 2X3XA 1X03A 2Q12A 3DYTA 4H8SA 3HAIA 4WPCA 3SOGA 3PLTA 4ATMA 2Z0NA 4DCNC 5C5BA 2RAIA 4DYLA 3OK8A 4NSWA 3CAZA 2V0OA 1I4DA 1WDZA 2RAJA 4BNEA 3SYVA 4I1QA 5C5BB 2YKTA 4NQIA 4FZSA 3HAHA 1I4TA 2C08A 2EFLA 1Y2OA 3I2WA 4WPEA 3G9GA 3QNIA 3M3WA 1X04A 3ACOA 3Q0KA 2X3VA 3LLLA 1ZWWA 2FICA 2RAKA 3QE6A 2EFKA 3QWEA 1I49A 2D1LA 2X3WA 2ELBA 2Z0VA 2D4CA 3HAJA 2Q13A
chains in the Genus database with same CATH superfamily
3ABHA 3BVTA 4JL9A 3DDGA 3D2FA 3D4YA 4FZOA 2KHOA 4EZSA 2WINM 2ND1A 4BNEA 4JWCA 1E1DA 2YIVX 3I2WA 2YLAA 3BLBA 3M3WA 3BUDA 2X5CA 3BVXA 2OBMA 4NPHA 4R5JA 3I01A 1MJGA 3F7WA 1QWUA 2X3XA 4WPCA 4EZVA 1HTYA 2O0I1 4HYBA 4F00A 4AZCA 2F18A 2QXLA 2F7OA 3EJRA 2X3VA 2YL6A 2FICA 4AZIA 3QE6A 2EFKA 1TQSA 2D4CA 4H6HA 2LM0A 3DX3A 1UPXA 4EZZA 4EZTA 3O3OB 1R5EA 2F7PA 1OA0A 4EZQA 2GAFD 3BUIA 3EJTA 3EJQA 1TQWA 3Q84A 4H8SA 4KIKA 4DCNC 4H6IA 3D50A 5FLEX 3D2EA 2LXYA 1TQVA 3L3OM 3OWGA 3BUBA 1JQKA 1I49A 2EWFA 2Q13A 2Z8YA 3CZNA 3SOGA 3DYTA 4IWQA 3RV0A 3BVUA 2RAJA 4R5IA 3T4AG 2EFLA 1Y2OA 3G9GA 3FD9A 2QKWA 4F01A 3PLTA 3B52X 3VKHA 4JWEA 2RAIA 4D8JA 4PO2A 2YLLA 1I4DA 1TQUA 2WYHA 2NCZA 3DDFA 1ZYLA 3DX0A 1HXKA 3BUQA 1SU6A 3B51X 3BVVA 3HAIA 2PY6A 3ERCC 3KAWA 4DYLA 1WDZA 2MI7A 4HR1B 5C5BB 3I04A 3ER8C 3VEBA 3QA8A 3DPQA 4EZYA 2FYVA 4B9QA 1I4LA 1X03A 4ATMA 3CAZA 2F7RA 4FM3A 3O3NB 1I4TA 4JLCA 1X04A 1ZWWA 4R5LA 4UDYX 3DX2A 2OO2A 4JNFA 3KDRA 2YI9A 2ALWA 3LVTA 2OBLA 3BVWA 3O3MB 1E2UA 2WYIA 1TQTA 4G6QA 4EZPA 3QNIA 3BUPA 3ER9B 3Q0KA 4AZCB 4M0MA 5TKYA 2YL9A 1DKYA 2X3WA 1R33A 3EJUA 1QWNA 2ZXQA 3RPMA 3CVRA 3EJSA 3A98A 2YL5A 3LMFA 4I1QA 4EZUA 3T49A 3D4ZA 2C08A 2RT6A 4FZPA 1HWWA 2D1LA 4EZNA 4AVMA 1GNTA 1O7DC 2OW6A 3C7NA 3OK8A 3T46A 4IM0A 2V0OA 4AZHA 3L3PA 4AZBA 3T48A 3ZEDA 2F1BA 4EZOA 3B53X 3QWEA 2ELBA 4JWIA 1PS3A 2Z0VA 3SYVA 3HAJA 2JNSA 1GN9A 2Q12A 4AZ7A 3D52A 3GI7A 1R34A 2YKTA 1LQ7A 4NQIA 4R5KA 3HAHA 2N3KA 4WPEA 3QNJA 4IWPA 1W9MA 4EZWA 2QFFA 3RV1A 1SU7A 2OZNB 1SU8A 4AKVA 1E9VA 2JNKA 3OHXM 2PMRA 1DKZA 1U00A 4EZXA 3CV5A 2F1AA 1OAOA 4JWDA 3VEAA 4E81A 1QX1A 1URUA 2Z0OA 1DKXA 2GA9D 3UITA 2YL8A 2YI8A 4NSWA 3DX4A 2YIAA 1OA1A 2YIBA 1YWMA 3DPOA 2OW7A 4FZSA 3LLLA 3I39X 4IM3A 4E3CA 4AZGA 4UDXX 4JNEA 3CKDA 4IWOA 3T47A 3CZSA 4IW0A 1GNLA 2ND0A 3ACOA 3DPPA 5FIGA 1SUFA 3KAVA 2EX3B 4EZRA 2F7QA 3DX1A 2Z0NA 4HR1A 5C5BA 3D51A 4JN4A 4KIKB 4R5GA 2GF4A 4AZ5A 5E84A 3EJPA 1O7DB 4HY9A 2RAKA 4IM2A 5KBPA 4AZ6A
chains in the Genus database with same CATH topology
1I4LA 1URUA 2Z0OA 4AKVA 4AVMA 3ABHA 3Q84A 2X3XA 1X03A 2Q12A 3DYTA 4H8SA 3HAIA 4WPCA 3SOGA 3PLTA 4ATMA 2Z0NA 4DCNC 5C5BA 2RAIA 4DYLA 3OK8A 4NSWA 3CAZA 2V0OA 1I4DA 1WDZA 2RAJA 4BNEA 3SYVA 4I1QA 5C5BB 2YKTA 4NQIA 4FZSA 3HAHA 1I4TA 2C08A 2EFLA 1Y2OA 3I2WA 4WPEA 3G9GA 3QNIA 3M3WA 1X04A 3ACOA 3Q0KA 2X3VA 3LLLA 1ZWWA 2FICA 2RAKA 3QE6A 2EFKA 3QWEA 1I49A 2D1LA 2X3WA 2ELBA 2Z0VA 2D4CA 3HAJA 2Q13A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1I4L A;  1URU A;  2Z0O A;  4AKV A;  4AVM A;  3ABH A;  3Q84 A;  2X3X A;  1X03 A;  2Q12 A;  3DYT A;  4H8S A;  3HAI A;  4WPC A;  3SOG A;  3PLT A;  4ATM A;  2Z0N A;  4DCN C;  5C5B A;  2RAI A;  4DYL A;  3OK8 A;  4NSW A;  3CAZ A;  2V0O A;  1I4D A;  1WDZ A;  2RAJ A;  4BNE A;  3SYV A;  4I1Q A;  5C5B B;  2YKT A;  4NQI A;  4FZS A;  3HAH A;  1I4T A;  2C08 A;  2EFL A;  1Y2O A;  3I2W A;  4WPE A;  3G9G A;  3QNI A;  3M3W A;  1X04 A;  3ACO A;  3Q0K A;  2X3V A;  3LLL A;  1ZWW A;  2FIC A;  2RAK A;  3QE6 A;  2EFK A;  3QWE A;  1I49 A;  2D1L A;  2X3W A;  2ELB A;  2Z0V A;  2D4C A;  3HAJ A;  2Q13 A; 
#chains in the Genus database with same CATH topology
 3ABH A;  3BVT A;  4JL9 A;  3DDG A;  3D2F A;  3D4Y A;  4FZO A;  2KHO A;  4EZS A;  2WIN M;  2ND1 A;  4BNE A;  4JWC A;  1E1D A;  2YIV X;  3I2W A;  2YLA A;  3BLB A;  3M3W A;  3BUD A;  2X5C A;  3BVX A;  2OBM A;  4NPH A;  4R5J A;  3I01 A;  1MJG A;  3F7W A;  1QWU A;  2X3X A;  4WPC A;  4EZV A;  1HTY A;  2O0I 1;  4HYB A;  4F00 A;  4AZC A;  2F18 A;  2QXL A;  2F7O A;  3EJR A;  2X3V A;  2YL6 A;  2FIC A;  4AZI A;  3QE6 A;  2EFK A;  1TQS A;  2D4C A;  4H6H A;  2LM0 A;  3DX3 A;  1UPX A;  4EZZ A;  4EZT A;  3O3O B;  1R5E A;  2F7P A;  1OA0 A;  4EZQ A;  2GAF D;  3BUI A;  3EJT A;  3EJQ A;  1TQW A;  3Q84 A;  4H8S A;  4KIK A;  4DCN C;  4H6I A;  3D50 A;  5FLE X;  3D2E A;  2LXY A;  1TQV A;  3L3O M;  3OWG A;  3BUB A;  1JQK A;  1I49 A;  2EWF A;  2Q13 A;  2Z8Y A;  3CZN A;  3SOG A;  3DYT A;  4IWQ A;  3RV0 A;  3BVU A;  2RAJ A;  4R5I A;  3T4A G;  2EFL A;  1Y2O A;  3G9G A;  3FD9 A;  2QKW A;  4F01 A;  3PLT A;  3B52 X;  3VKH A;  4JWE A;  2RAI A;  4D8J A;  4PO2 A;  2YLL A;  1I4D A;  1TQU A;  2WYH A;  2NCZ A;  3DDF A;  1ZYL A;  3DX0 A;  1HXK A;  3BUQ A;  1SU6 A;  3B51 X;  3BVV A;  3HAI A;  2PY6 A;  3ERC C;  3KAW A;  4DYL A;  1WDZ A;  2MI7 A;  4HR1 B;  5C5B B;  3I04 A;  3ER8 C;  3VEB A;  3QA8 A;  3DPQ A;  4EZY A;  2FYV A;  4B9Q A;  1I4L A;  1X03 A;  4ATM A;  3CAZ A;  2F7R A;  4FM3 A;  3O3N B;  1I4T A;  4JLC A;  1X04 A;  1ZWW A;  4R5L A;  4UDY X;  3DX2 A;  2OO2 A;  4JNF A;  3KDR A;  2YI9 A;  2ALW A;  3LVT A;  2OBL A;  3BVW A;  3O3M B;  1E2U A;  2WYI A;  1TQT A;  4G6Q A;  4EZP A;  3QNI A;  3BUP A;  3ER9 B;  3Q0K A;  4AZC B;  4M0M A;  5TKY A;  2YL9 A;  1DKY A;  2X3W A;  1R33 A;  3EJU A;  1QWN A;  2ZXQ A;  3RPM A;  3CVR A;  3EJS A;  3A98 A;  2YL5 A;  3LMF A;  4I1Q A;  4EZU A;  3T49 A;  3D4Z A;  2C08 A;  2RT6 A;  4FZP A;  1HWW A;  2D1L A;  4EZN A;  4AVM A;  1GNT A;  1O7D C;  2OW6 A;  3C7N A;  3OK8 A;  3T46 A;  4IM0 A;  2V0O A;  4AZH A;  3L3P A;  4AZB A;  3T48 A;  3ZED A;  2F1B A;  4EZO A;  3B53 X;  3QWE A;  2ELB A;  4JWI A;  1PS3 A;  2Z0V A;  3SYV A;  3HAJ A;  2JNS A;  1GN9 A;  2Q12 A;  4AZ7 A;  3D52 A;  3GI7 A;  1R34 A;  2YKT A;  1LQ7 A;  4NQI A;  4R5K A;  3HAH A;  2N3K A;  4WPE A;  3QNJ A;  4IWP A;  1W9M A;  4EZW A;  2QFF A;  3RV1 A;  1SU7 A;  2OZN B;  1SU8 A;  4AKV A;  1E9V A;  2JNK A;  3OHX M;  2PMR A;  1DKZ A;  1U00 A;  4EZX A;  3CV5 A;  2F1A A;  1OAO A;  4JWD A;  3VEA A;  4E81 A;  1QX1 A;  1URU A;  2Z0O A;  1DKX A;  2GA9 D;  3UIT A;  2YL8 A;  2YI8 A;  4NSW A;  3DX4 A;  2YIA A;  1OA1 A;  2YIB A;  1YWM A;  3DPO A;  2OW7 A;  4FZS A;  3LLL A;  3I39 X;  4IM3 A;  4E3C A;  4AZG A;  4UDX X;  4JNE A;  3CKD A;  4IWO A;  3T47 A;  3CZS A;  4IW0 A;  1GNL A;  2ND0 A;  3ACO A;  3DPP A;  5FIG A;  1SUF A;  3KAV A;  2EX3 B;  4EZR A;  2F7Q A;  3DX1 A;  2Z0N A;  4HR1 A;  5C5B A;  3D51 A;  4JN4 A;  4KIK B;  4R5G A;  2GF4 A;  4AZ5 A;  5E84 A;  3EJP A;  1O7D B;  4HY9 A;  2RAK A;  4IM2 A;  5KBP A;  4AZ6 A; 
#chains in the Genus database with same CATH homology
 1I4L A;  1URU A;  2Z0O A;  4AKV A;  4AVM A;  3ABH A;  3Q84 A;  2X3X A;  1X03 A;  2Q12 A;  3DYT A;  4H8S A;  3HAI A;  4WPC A;  3SOG A;  3PLT A;  4ATM A;  2Z0N A;  4DCN C;  5C5B A;  2RAI A;  4DYL A;  3OK8 A;  4NSW A;  3CAZ A;  2V0O A;  1I4D A;  1WDZ A;  2RAJ A;  4BNE A;  3SYV A;  4I1Q A;  5C5B B;  2YKT A;  4NQI A;  4FZS A;  3HAH A;  1I4T A;  2C08 A;  2EFL A;  1Y2O A;  3I2W A;  4WPE A;  3G9G A;  3QNI A;  3M3W A;  1X04 A;  3ACO A;  3Q0K A;  2X3V A;  3LLL A;  1ZWW A;  2FIC A;  2RAK A;  3QE6 A;  2EFK A;  3QWE A;  1I49 A;  2D1L A;  2X3W A;  2ELB A;  2Z0V A;  2D4C A;  3HAJ A;  2Q13 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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